data_CCJ # _chem_comp.id CCJ _chem_comp.name "Carboxymthylated D- Cysteine" _chem_comp.type "D-peptide linking" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C5 H9 N O4 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2017-06-01 _chem_comp.pdbx_modified_date 2025-03-14 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 179.194 _chem_comp.one_letter_code ? _chem_comp.three_letter_code CCJ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5O4Y _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal CCJ N N N 0 1 N N N Y Y N -19.521 17.740 15.328 -1.946 1.743 -0.262 N CCJ 1 CCJ CA CA C 0 1 N N S Y N N -20.765 17.106 15.649 -1.937 0.407 0.349 CA CCJ 2 CCJ CB CB C 0 1 N N N N N N -21.573 17.554 16.837 -0.757 -0.397 -0.200 CB CCJ 3 CCJ SG SG S 0 1 N N N N N N -22.149 19.186 16.654 0.798 0.380 0.321 SG CCJ 4 CCJ CD CD C 0 1 N N N N N N -22.527 19.597 18.324 2.058 -0.698 -0.414 CD CCJ 5 CCJ CE CE C 0 1 N N N N N N -21.420 20.226 19.059 3.429 -0.177 -0.065 CE CCJ 6 CCJ OZ1 OZ1 O 0 1 N N N N N N -21.763 20.580 20.172 3.544 0.818 0.609 OZ1 CCJ 7 CCJ C C C 0 1 N N N Y N Y -20.351 15.686 15.834 -3.225 -0.304 0.021 C CCJ 8 CCJ O O O 0 1 N N N Y N Y -19.572 15.243 15.015 -3.895 0.061 -0.916 O CCJ 9 CCJ OXT OXT O 0 1 N Y N Y N Y -20.886 14.914 16.781 -3.628 -1.343 0.769 OXT CCJ 10 CCJ H H H 0 1 N N N Y Y N -19.673 18.717 15.179 -1.122 2.264 -0.003 H CCJ 11 CCJ H2 H1 H 0 1 N Y N Y Y N -18.878 17.615 16.084 -2.035 1.682 -1.265 H1 CCJ 12 CCJ HA HA H 0 1 N N N Y N N -21.419 17.153 14.766 -1.840 0.502 1.430 HA CCJ 13 CCJ HB2 HB2 H 0 1 N N N N N N -22.437 16.883 16.953 -0.801 -1.416 0.184 HB2 CCJ 14 CCJ HB3 HB3 H 0 1 N N N N N N -20.943 17.498 17.737 -0.806 -0.417 -1.289 HB3 CCJ 15 CCJ HD3 HD3 H 0 1 N N N N N N -23.379 20.293 18.323 1.944 -1.709 -0.024 HD3 CCJ 16 CCJ HD2 HD2 H 0 1 N N N N N N -22.809 18.673 18.851 1.939 -0.710 -1.497 HD2 CCJ 17 CCJ HXT H6 H 0 1 N Y N Y N Y -20.560 14.027 16.689 -4.460 -1.767 0.520 H6 CCJ 18 CCJ OZ2 OZ2 O 0 1 N Y N N N N -20.224 20.322 18.456 4.523 -0.820 -0.505 OZ2 CCJ 19 CCJ H1 H2 H 0 1 N Y N N N N -19.605 20.737 19.044 5.380 -0.448 -0.256 H2 CCJ 20 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal CCJ O C DOUB N N 1 CCJ N CA SING N N 2 CCJ CA C SING N N 3 CCJ CA CB SING N N 4 CCJ SG CB SING N N 5 CCJ SG CD SING N N 6 CCJ CD CE SING N N 7 CCJ CE OZ1 DOUB N N 8 CCJ C OXT SING N N 9 CCJ N H SING N N 10 CCJ N H2 SING N N 11 CCJ CA HA SING N N 12 CCJ CB HB2 SING N N 13 CCJ CB HB3 SING N N 14 CCJ CD HD3 SING N N 15 CCJ CD HD2 SING N N 16 CCJ OXT HXT SING N N 17 CCJ CE OZ2 SING N N 18 CCJ OZ2 H1 SING N N 19 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor CCJ InChI InChI 1.03 "InChI=1S/C5H9NO4S/c6-3(5(9)10)1-11-2-4(7)8/h3H,1-2,6H2,(H,7,8)(H,9,10)/t3-/m1/s1" CCJ InChIKey InChI 1.03 GBFLZEXEOZUWRN-GSVOUGTGSA-N CCJ SMILES_CANONICAL CACTVS 3.385 "N[C@H](CSCC(O)=O)C(O)=O" CCJ SMILES CACTVS 3.385 "N[CH](CSCC(O)=O)C(O)=O" CCJ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "C([C@H](C(=O)O)N)SCC(=O)O" CCJ SMILES "OpenEye OEToolkits" 2.0.6 "C(C(C(=O)O)N)SCC(=O)O" # _pdbx_chem_comp_identifier.comp_id CCJ _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.6 _pdbx_chem_comp_identifier.identifier "(2~{S})-2-azanyl-3-(2-hydroxy-2-oxoethylsulfanyl)propanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site CCJ "Create component" 2017-06-01 EBI CCJ "Modify backbone" 2023-11-03 PDBE CCJ "Modify PCM" 2024-09-27 PDBE CCJ "Initial release" 2025-03-19 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id CCJ _pdbx_chem_comp_pcm.modified_residue_id DCY _pdbx_chem_comp_pcm.type Carboxymethylation _pdbx_chem_comp_pcm.category "Named protein modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom ? _pdbx_chem_comp_pcm.modified_residue_id_linking_atom ? _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #