data_CDR # _chem_comp.id CDR _chem_comp.name "(2R,5S,6R)-6-methyltetrahydro-2H-pyran-2,5-diol" _chem_comp.type "D-saccharide, beta linking" _chem_comp.pdbx_type ATOMS _chem_comp.formula "C6 H12 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "2,3-DIDEOXYFUCOSE" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 132.158 _chem_comp.one_letter_code ? _chem_comp.three_letter_code CDR _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1D83 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id CDR _pdbx_chem_comp_synonyms.name "2,3-DIDEOXYFUCOSE" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal CDR O1 OGL O 0 1 N Y N 8.287 -2.726 3.603 2.888 0.313 0.090 O1 CDR 1 CDR C1 C1 C 0 1 N N R 7.774 -2.444 4.912 1.563 -0.007 -0.337 C1 CDR 2 CDR C2 C2 C 0 1 N N N 7.067 -3.739 5.359 1.137 -1.342 0.279 C2 CDR 3 CDR C3 C3 C 0 1 N N N 6.508 -3.600 6.791 -0.306 -1.650 -0.134 C3 CDR 4 CDR C4 C4 C 0 1 N N S 7.759 -3.302 7.660 -1.208 -0.493 0.304 C4 CDR 5 CDR O4 O4 O 0 1 N N N 7.300 -3.187 9.003 -2.545 -0.734 -0.140 O4 CDR 6 CDR C5 C5 C 0 1 N N R 8.322 -1.915 7.188 -0.692 0.810 -0.313 C5 CDR 7 CDR O5 O1 O 0 1 N N N 8.800 -2.089 5.850 0.664 1.020 0.087 O5 CDR 8 CDR C6 C6 C 0 1 N N N 9.455 -1.549 8.177 -1.553 1.979 0.169 C6 CDR 9 CDR HO1 HOG H 0 1 N Y N 8.739 -1.960 3.268 3.224 1.148 -0.263 HO1 CDR 10 CDR H1 H1 H 0 1 N N N 7.025 -1.640 4.855 1.540 -0.085 -1.424 H1 CDR 11 CDR H2 H21 H 0 1 N N N 6.238 -3.952 4.669 1.795 -2.135 -0.078 H2 CDR 12 CDR H22 H22 H 0 1 N N N 7.788 -4.569 5.334 1.199 -1.279 1.366 H22 CDR 13 CDR H3 H31 H 0 1 N N N 5.786 -2.772 6.849 -0.358 -1.763 -1.217 H3 CDR 14 CDR H32 H32 H 0 1 N N N 6.023 -4.533 7.113 -0.635 -2.571 0.346 H32 CDR 15 CDR H4 H4 H 0 1 N N N 8.517 -4.089 7.535 -1.195 -0.412 1.391 H4 CDR 16 CDR HO4 HO4 H 0 1 N N N 8.036 -3.003 9.575 -2.934 -1.548 0.209 HO4 CDR 17 CDR H5 H5 H 0 1 N N N 7.525 -1.158 7.237 -0.744 0.743 -1.399 H5 CDR 18 CDR H61 H61 H 0 1 N N N 9.890 -0.579 7.894 -1.499 2.046 1.256 H61 CDR 19 CDR H62 H62 H 0 1 N N N 9.045 -1.484 9.196 -1.184 2.907 -0.270 H62 CDR 20 CDR H63 H63 H 0 1 N N N 10.235 -2.324 8.144 -2.587 1.819 -0.135 H63 CDR 21 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal CDR O1 C1 SING N N 1 CDR O1 HO1 SING N N 2 CDR C1 C2 SING N N 3 CDR C1 O5 SING N N 4 CDR C1 H1 SING N N 5 CDR C2 C3 SING N N 6 CDR C2 H2 SING N N 7 CDR C2 H22 SING N N 8 CDR C3 C4 SING N N 9 CDR C3 H3 SING N N 10 CDR C3 H32 SING N N 11 CDR C4 O4 SING N N 12 CDR C4 C5 SING N N 13 CDR C4 H4 SING N N 14 CDR O4 HO4 SING N N 15 CDR C5 O5 SING N N 16 CDR C5 C6 SING N N 17 CDR C5 H5 SING N N 18 CDR C6 H61 SING N N 19 CDR C6 H62 SING N N 20 CDR C6 H63 SING N N 21 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor CDR SMILES ACDLabs 12.01 "OC1C(OC(O)CC1)C" CDR InChI InChI 1.03 "InChI=1S/C6H12O3/c1-4-5(7)2-3-6(8)9-4/h4-8H,2-3H2,1H3/t4-,5+,6-/m1/s1" CDR InChIKey InChI 1.03 ZCYMCBOUZXAAJG-NGJCXOISSA-N CDR SMILES_CANONICAL CACTVS 3.385 "C[C@H]1O[C@@H](O)CC[C@@H]1O" CDR SMILES CACTVS 3.385 "C[CH]1O[CH](O)CC[CH]1O" CDR SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C[C@@H]1[C@H](CC[C@@H](O1)O)O" CDR SMILES "OpenEye OEToolkits" 1.7.6 "CC1C(CCC(O1)O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier CDR "SYSTEMATIC NAME" ACDLabs 12.01 "(2R,5S,6R)-6-methyltetrahydro-2H-pyran-2,5-diol" CDR "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2R,5S,6R)-6-methyloxane-2,5-diol" # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support CDR "CARBOHYDRATE ISOMER" D PDB ? CDR "CARBOHYDRATE RING" pyranose PDB ? CDR "CARBOHYDRATE ANOMER" beta PDB ? CDR "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site CDR "Create component" 1999-07-08 RCSB CDR "Modify descriptor" 2011-06-04 RCSB CDR "Modify leaving atom flag" 2013-10-31 RCSB CDR "Other modification" 2020-07-03 RCSB CDR "Modify name" 2020-07-17 RCSB CDR "Modify synonyms" 2020-07-17 RCSB CDR "Modify linking type" 2020-07-17 RCSB CDR "Modify atom id" 2020-07-17 RCSB CDR "Modify component atom id" 2020-07-17 RCSB CDR "Modify leaving atom flag" 2020-07-17 RCSB ##