data_CDW # _chem_comp.id CDW _chem_comp.name "(4R)-3-(2-DEOXY-5-O-PHOSPHONO-BETA-D-ERYTHRO-PENTOFURANOSYL)-1,3-DIAZABICYCLO[2.2.0]HEX-5-EN-2-ONE" _chem_comp.type "DNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C9 H13 N2 O7 P" _chem_comp.mon_nstd_parent_comp_id DC _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2009-08-14 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 292.182 _chem_comp.one_letter_code C _chem_comp.three_letter_code CDW _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2WQ6 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal CDW P P P 0 1 N N N -1.665 -21.225 19.352 3.941 0.651 0.038 P CDW 1 CDW OP1 OP1 O 0 1 N N N -2.658 -20.729 20.325 4.830 -0.417 -0.470 OP1 CDW 2 CDW OP2 OP2 O 0 1 N N N -0.187 -21.153 19.634 3.673 1.727 -1.128 OP2 CDW 3 CDW "O5'" "O5'" O 0 1 N N N -2.002 -20.463 17.996 2.542 0.007 0.507 "O5'" CDW 4 CDW "C5'" "C5'" C 0 1 N N N -1.227 -20.650 16.821 1.730 -0.799 -0.350 "C5'" CDW 5 CDW "C4'" "C4'" C 0 1 N N R -1.890 -19.920 15.644 0.478 -1.247 0.406 "C4'" CDW 6 CDW "O4'" "O4'" O 0 1 N N N -2.962 -20.698 15.058 -0.366 -0.114 0.707 "O4'" CDW 7 CDW "C3'" "C3'" C 0 1 N N S -2.512 -18.586 16.042 -0.416 -2.134 -0.496 "C3'" CDW 8 CDW "O3'" "O3'" O 0 1 N N N -1.726 -17.508 15.612 -0.008 -3.502 -0.431 "O3'" CDW 9 CDW "C2'" "C2'" C 0 1 N N N -3.815 -18.492 15.303 -1.813 -1.944 0.143 "C2'" CDW 10 CDW "C1'" "C1'" C 0 1 N N R -3.977 -19.831 14.603 -1.690 -0.626 0.934 "C1'" CDW 11 CDW N1 N1 N 0 1 N N N -5.253 -20.367 14.996 -2.685 0.337 0.455 N1 CDW 12 CDW C2 C2 C 0 1 N N N -5.904 -21.555 14.724 -2.885 0.966 -0.713 C2 CDW 13 CDW O2 O2 O 0 1 N N N -5.840 -22.286 13.750 -2.303 0.964 -1.781 O2 CDW 14 CDW N3 N3 N 0 1 N N N -6.640 -21.561 15.937 -3.976 1.597 -0.249 N3 CDW 15 CDW C4 C4 C 0 1 N N N -6.420 -22.036 17.153 -5.239 1.051 -0.435 C4 CDW 16 CDW C6 C6 C 0 1 N N R -5.928 -20.276 16.243 -3.847 0.979 1.064 C6 CDW 17 CDW C5 C5 C 0 1 N N N -5.723 -20.870 17.534 -5.210 0.456 0.736 C5 CDW 18 CDW OP3 OP3 O 0 1 N Y N -1.983 -22.735 19.041 4.642 1.381 1.291 OP3 CDW 19 CDW HP2 HP2 H 0 1 N N N 0.292 -21.138 18.814 3.096 2.457 -0.865 HP2 CDW 20 CDW HP3 HP3 H 0 1 N N N -2.047 -22.859 18.101 5.491 1.793 1.081 HP3 CDW 21 CDW H51 H51 H 0 1 N N N -0.217 -20.244 16.981 1.438 -0.218 -1.225 H51 CDW 22 CDW H52 H52 H 0 1 N N N -1.162 -21.724 16.594 2.296 -1.675 -0.668 H52 CDW 23 CDW "H4'" "H4'" H 0 1 N N N -1.069 -19.762 14.930 0.751 -1.775 1.319 "H4'" CDW 24 CDW "H3'" "H3'" H 0 1 N N N -2.616 -18.541 17.136 -0.407 -1.776 -1.526 "H3'" CDW 25 CDW "H1'" "H1'" H 0 1 N N N -3.914 -19.721 13.510 -1.837 -0.817 1.997 "H1'" CDW 26 CDW HA HA H 0 1 N N N -1.548 -16.932 16.346 -0.538 -4.097 -0.979 HA CDW 27 CDW H21 H21 H 0 1 N N N -4.648 -18.310 15.998 -2.577 -1.855 -0.629 H21 CDW 28 CDW H22 H22 H 0 1 N N N -3.820 -17.655 14.589 -2.042 -2.771 0.814 H22 CDW 29 CDW H6 H6 H 0 1 N N N -6.044 -19.192 16.391 -3.710 1.535 1.991 H6 CDW 30 CDW H41C H41C H 0 0 N N N -6.675 -22.957 17.657 -5.964 1.097 -1.234 H41C CDW 31 CDW H51C H51C H 0 0 N N N -5.230 -20.550 18.440 -5.909 -0.177 1.264 H51C CDW 32 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal CDW P OP1 DOUB N N 1 CDW P OP2 SING N N 2 CDW P "O5'" SING N N 3 CDW P OP3 SING N N 4 CDW "O5'" "C5'" SING N N 5 CDW "C5'" "C4'" SING N N 6 CDW "C4'" "O4'" SING N N 7 CDW "C4'" "C3'" SING N N 8 CDW "O4'" "C1'" SING N N 9 CDW "C3'" "O3'" SING N N 10 CDW "C3'" "C2'" SING N N 11 CDW "C2'" "C1'" SING N N 12 CDW "C1'" N1 SING N N 13 CDW N1 C2 SING N N 14 CDW N1 C6 SING N N 15 CDW C2 O2 DOUB N N 16 CDW C2 N3 SING N N 17 CDW N3 C4 SING N N 18 CDW N3 C6 SING N N 19 CDW C4 C5 DOUB N N 20 CDW OP2 HP2 SING N N 21 CDW OP3 HP3 SING N N 22 CDW "C5'" H51 SING N N 23 CDW "C5'" H52 SING N N 24 CDW "C4'" "H4'" SING N N 25 CDW "C3'" "H3'" SING N N 26 CDW "C1'" "H1'" SING N N 27 CDW "O3'" HA SING N N 28 CDW "C2'" H21 SING N N 29 CDW "C2'" H22 SING N N 30 CDW C6 C5 SING N N 31 CDW C6 H6 SING N N 32 CDW C4 H41C SING N N 33 CDW C5 H51C SING N N 34 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor CDW SMILES ACDLabs 10.04 "O=C2N1C=CC1N2C3OC(C(O)C3)COP(=O)(O)O" CDW SMILES_CANONICAL CACTVS 3.352 "O[C@H]1C[C@@H](O[C@@H]1CO[P](O)(O)=O)N2[C@@H]3C=CN3C2=O" CDW SMILES CACTVS 3.352 "O[CH]1C[CH](O[CH]1CO[P](O)(O)=O)N2[CH]3C=CN3C2=O" CDW SMILES_CANONICAL "OpenEye OEToolkits" 1.6.1 "C1[C@@H]([C@H](O[C@H]1N2[C@@H]3C=CN3C2=O)COP(=O)(O)O)O" CDW SMILES "OpenEye OEToolkits" 1.6.1 "C1C(C(OC1N2C3C=CN3C2=O)COP(=O)(O)O)O" CDW InChI InChI 1.03 "InChI=1S/C9H13N2O7P/c12-5-3-8(11-7-1-2-10(7)9(11)13)18-6(5)4-17-19(14,15)16/h1-2,5-8,12H,3-4H2,(H2,14,15,16)/t5-,6+,7+,8+/m0/s1" CDW InChIKey InChI 1.03 MFBBRWBWVQMJIV-LXGUWJNJSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier CDW "SYSTEMATIC NAME" ACDLabs 10.04 "(4R)-3-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)-1,3-diazabicyclo[2.2.0]hex-5-en-2-one" CDW "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "[(2R,3S,5R)-3-hydroxy-5-[(4R)-6-oxo-1,5-diazabicyclo[2.2.0]hex-2-en-5-yl]oxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site CDW "Create component" 2009-08-14 EBI CDW "Modify descriptor" 2011-06-04 RCSB #