data_CDY # _chem_comp.id CDY _chem_comp.name 2-CHLORODIDEOXYADENOSINE _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H12 Cl N5 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2003-09-11 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 269.688 _chem_comp.one_letter_code ? _chem_comp.three_letter_code CDY _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1QYE _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal CDY "O5'" O5* O 0 1 N N N 16.375 -13.851 54.564 0.155 -1.423 -5.521 "O5'" CDY 1 CDY "C5'" C5* C 0 1 N N N 17.665 -13.401 54.185 0.072 -0.054 -5.118 "C5'" CDY 2 CDY "C4'" C4* C 0 1 N N S 18.542 -14.600 53.804 -0.773 0.052 -3.848 "C4'" CDY 3 CDY "O4'" O4* O 0 1 N N N 18.883 -15.483 54.916 -0.114 -0.599 -2.741 "O4'" CDY 4 CDY "C3'" C3* C 0 1 N N N 17.930 -15.510 52.772 -0.879 1.528 -3.387 "C3'" CDY 5 CDY "C2'" C2* C 0 1 N N N 18.825 -16.709 52.857 -1.164 1.375 -1.873 "C2'" CDY 6 CDY "C1'" C1* C 0 1 N N R 19.181 -16.807 54.352 -0.668 -0.043 -1.536 "C1'" CDY 7 CDY N9 N9 N 0 1 Y N N 18.323 -17.820 55.009 0.363 0.022 -0.498 N9 CDY 8 CDY C8 C8 C 0 1 Y N N 17.149 -17.610 55.633 1.705 0.146 -0.701 C8 CDY 9 CDY N7 N7 N 0 1 Y N N 16.677 -18.783 56.078 2.327 0.173 0.441 N7 CDY 10 CDY C5 C5 C 0 1 Y N N 17.545 -19.726 55.739 1.425 0.075 1.447 C5 CDY 11 CDY C4 C4 C 0 1 Y N N 18.588 -19.114 55.066 0.155 -0.029 0.856 C4 CDY 12 CDY N3 N3 N 0 1 Y N N 19.624 -19.843 54.610 -0.914 -0.142 1.638 N3 CDY 13 CDY C2 C2 C 0 1 Y N N 19.664 -21.178 54.802 -0.787 -0.163 2.949 C2 CDY 14 CDY CL CL CL 0 0 N N N 21.065 -22.096 54.219 -2.216 -0.313 3.924 CL CDY 15 CDY N1 N1 N 0 1 Y N N 18.655 -21.805 55.455 0.386 -0.073 3.550 N1 CDY 16 CDY C6 C6 C 0 1 Y N N 17.591 -21.105 55.926 1.509 0.043 2.850 C6 CDY 17 CDY N6 N6 N 0 1 N N N 16.584 -21.736 56.534 2.734 0.136 3.487 N6 CDY 18 CDY HO5 HO5 H 0 1 N N N 15.832 -13.108 54.800 0.695 -1.446 -6.323 HO5 CDY 19 CDY HC51 1HC5 H 0 0 N N N 18.137 -12.770 54.974 -0.388 0.530 -5.913 HC51 CDY 20 CDY HC52 2HC5 H 0 0 N N N 17.621 -12.639 53.373 1.074 0.326 -4.921 HC52 CDY 21 CDY "H4'" H4* H 0 1 N N N 19.447 -14.081 53.410 -1.764 -0.370 -4.011 "H4'" CDY 22 CDY HC31 1HC3 H 0 0 N N N 17.823 -15.069 51.754 -1.704 2.034 -3.889 HC31 CDY 23 CDY HC32 2HC3 H 0 0 N N N 16.843 -15.718 52.908 0.058 2.057 -3.554 HC32 CDY 24 CDY HC21 1HC2 H 0 0 N N N 19.708 -16.670 52.178 -2.233 1.462 -1.675 HC21 CDY 25 CDY HC22 2HC2 H 0 0 N N N 18.385 -17.640 52.430 -0.608 2.119 -1.303 HC22 CDY 26 CDY "H1'" H1* H 0 1 N N N 20.246 -17.102 54.503 -1.501 -0.656 -1.192 "H1'" CDY 27 CDY HC8 HC8 H 0 1 N N N 16.653 -16.633 55.760 2.182 0.211 -1.668 HC8 CDY 28 CDY HN61 1HN6 H 0 0 N N N 15.719 -21.507 56.044 2.779 0.117 4.456 HN61 CDY 29 CDY HN62 2HN6 H 0 0 N N N 16.618 -22.746 56.671 3.548 0.217 2.965 HN62 CDY 30 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal CDY "O5'" "C5'" SING N N 1 CDY "O5'" HO5 SING N N 2 CDY "C5'" "C4'" SING N N 3 CDY "C5'" HC51 SING N N 4 CDY "C5'" HC52 SING N N 5 CDY "C4'" "O4'" SING N N 6 CDY "C4'" "C3'" SING N N 7 CDY "C4'" "H4'" SING N N 8 CDY "O4'" "C1'" SING N N 9 CDY "C3'" "C2'" SING N N 10 CDY "C3'" HC31 SING N N 11 CDY "C3'" HC32 SING N N 12 CDY "C2'" "C1'" SING N N 13 CDY "C2'" HC21 SING N N 14 CDY "C2'" HC22 SING N N 15 CDY "C1'" N9 SING N N 16 CDY "C1'" "H1'" SING N N 17 CDY N9 C8 SING Y N 18 CDY N9 C4 SING Y N 19 CDY C8 N7 DOUB Y N 20 CDY C8 HC8 SING N N 21 CDY N7 C5 SING Y N 22 CDY C5 C4 DOUB Y N 23 CDY C5 C6 SING Y N 24 CDY C4 N3 SING Y N 25 CDY N3 C2 DOUB Y N 26 CDY C2 CL SING N N 27 CDY C2 N1 SING Y N 28 CDY N1 C6 DOUB Y N 29 CDY C6 N6 SING N N 30 CDY N6 HN61 SING N N 31 CDY N6 HN62 SING N N 32 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor CDY SMILES ACDLabs 10.04 "Clc1nc(c2ncn(c2n1)C3OC(CC3)CO)N" CDY SMILES_CANONICAL CACTVS 3.341 "Nc1nc(Cl)nc2n(cnc12)[C@H]3CC[C@@H](CO)O3" CDY SMILES CACTVS 3.341 "Nc1nc(Cl)nc2n(cnc12)[CH]3CC[CH](CO)O3" CDY SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc2c(nc(nc2n1[C@H]3CC[C@H](O3)CO)Cl)N" CDY SMILES "OpenEye OEToolkits" 1.5.0 "c1nc2c(nc(nc2n1C3CCC(O3)CO)Cl)N" CDY InChI InChI 1.03 "InChI=1S/C10H12ClN5O2/c11-10-14-8(12)7-9(15-10)16(4-13-7)6-2-1-5(3-17)18-6/h4-6,17H,1-3H2,(H2,12,14,15)/t5-,6+/m0/s1" CDY InChIKey InChI 1.03 FNLILOONPKMGST-NTSWFWBYSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier CDY "SYSTEMATIC NAME" ACDLabs 10.04 "[(2S,5R)-5-(6-amino-2-chloro-9H-purin-9-yl)tetrahydrofuran-2-yl]methanol" CDY "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2S,5R)-5-(6-amino-2-chloro-purin-9-yl)oxolan-2-yl]methanol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site CDY "Create component" 2003-09-11 RCSB CDY "Modify descriptor" 2011-06-04 RCSB #