data_CFZ # _chem_comp.id CFZ _chem_comp.name ;2'-deoxy-2'-fluorocytidine 5'-(dihydrogen phosphate) ; _chem_comp.type "DNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C9 H13 F N3 O7 P" _chem_comp.mon_nstd_parent_comp_id DC _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2010-04-13 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 325.188 _chem_comp.one_letter_code ? _chem_comp.three_letter_code CFZ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3AGV _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal CFZ P P P 0 1 N N N 33.646 15.023 24.064 4.176 1.031 0.067 P CFZ 1 CFZ N1 N1 N 0 1 N N N 33.918 9.728 23.714 -2.467 0.031 0.464 N1 CFZ 2 CFZ C2 C2 C 0 1 N N N 33.873 8.458 23.133 -2.544 0.708 -0.696 C2 CFZ 3 CFZ O2 O2 O 0 1 N N N 34.456 7.519 23.695 -1.667 0.569 -1.532 O2 CFZ 4 CFZ N3 N3 N 0 1 N N N 33.199 8.285 21.974 -3.563 1.528 -0.946 N3 CFZ 5 CFZ C4 C4 C 0 1 N N N 32.595 9.322 21.393 -4.530 1.699 -0.054 C4 CFZ 6 CFZ N4 N4 N 0 1 N N N 31.932 9.101 20.256 -5.578 2.548 -0.324 N4 CFZ 7 CFZ C5 C5 C 0 1 N N N 32.641 10.632 21.953 -4.478 1.004 1.171 C5 CFZ 8 CFZ C6 C6 C 0 1 N N N 33.308 10.788 23.104 -3.439 0.169 1.408 C6 CFZ 9 CFZ "C1'" "C1'" C 0 1 N N R 34.623 9.896 24.995 -1.334 -0.865 0.710 "C1'" CFZ 10 CFZ O1P O1P O 0 1 N N N 34.400 16.152 24.668 4.620 2.004 1.270 O1P CFZ 11 CFZ "C2'" "C2'" C 0 1 N N R 36.139 9.933 24.848 -1.311 -2.003 -0.334 "C2'" CFZ 12 CFZ "F2'" "F2'" F 0 1 N N N 36.798 9.427 25.992 -1.886 -3.164 0.194 "F2'" CFZ 13 CFZ O2P O2P O 0 1 N N N 33.272 15.065 22.626 3.925 1.834 -1.150 O2P CFZ 14 CFZ "C3'" "C3'" C 0 1 N N R 36.390 11.427 24.671 0.192 -2.224 -0.616 "C3'" CFZ 15 CFZ "O3'" "O3'" O 0 1 N N N 37.746 11.809 24.905 0.579 -3.553 -0.259 "O3'" CFZ 16 CFZ O3P O3P O 0 1 N Y N 32.311 14.855 24.934 5.349 -0.033 -0.224 O3P CFZ 17 CFZ "C4'" "C4'" C 0 1 N N R 35.439 11.985 25.716 0.900 -1.193 0.291 "C4'" CFZ 18 CFZ "O4'" "O4'" O 0 1 N N N 34.254 11.152 25.557 -0.086 -0.162 0.517 "O4'" CFZ 19 CFZ "C5'" "C5'" C 0 1 N N N 35.045 13.434 25.589 2.126 -0.614 -0.417 "C5'" CFZ 20 CFZ "O5'" "O5'" O 0 1 N N N 34.447 13.674 24.328 2.831 0.248 0.479 "O5'" CFZ 21 CFZ HN4 HN4 H 0 1 N N N 31.900 8.180 19.867 -5.612 3.025 -1.168 HN4 CFZ 22 CFZ HN4A HN4A H 0 0 N N N 31.467 9.856 19.793 -6.284 2.671 0.330 HN4A CFZ 23 CFZ H5 H5 H 0 1 N N N 32.157 11.467 21.468 -5.258 1.132 1.908 H5 CFZ 24 CFZ H6 H6 H 0 1 N N N 33.365 11.767 23.557 -3.377 -0.375 2.339 H6 CFZ 25 CFZ "H1'" "H1'" H 0 1 N N N 34.343 9.034 25.618 -1.387 -1.274 1.719 "H1'" CFZ 26 CFZ HO1P HO1P H 0 0 N N N 34.563 16.814 24.007 5.425 2.509 1.091 HO1P CFZ 27 CFZ "H2'" "H2'" H 0 1 N N N 36.519 9.310 24.025 -1.831 -1.699 -1.242 "H2'" CFZ 28 CFZ "H3'" "H3'" H 0 1 N N N 36.222 11.792 23.647 0.417 -2.030 -1.665 "H3'" CFZ 29 CFZ "HO3'" "HO3'" H 0 0 N Y N 37.838 12.746 24.780 0.119 -4.243 -0.757 "HO3'" CFZ 30 CFZ HO3P HO3P H 0 0 N Y N 31.558 14.817 24.356 5.566 -0.595 0.533 HO3P CFZ 31 CFZ "H4'" "H4'" H 0 1 N N N 35.938 11.960 26.696 1.190 -1.654 1.235 "H4'" CFZ 32 CFZ "H5'" "H5'" H 0 1 N N N 34.326 13.684 26.383 2.782 -1.426 -0.731 "H5'" CFZ 33 CFZ "H5'A" "H5'A" H 0 0 N N N 35.942 14.062 25.689 1.807 -0.046 -1.291 "H5'A" CFZ 34 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal CFZ O2P P DOUB N N 1 CFZ P "O5'" SING N N 2 CFZ P O1P SING N N 3 CFZ P O3P SING N N 4 CFZ C6 N1 SING N N 5 CFZ C2 N1 SING N N 6 CFZ N1 "C1'" SING N N 7 CFZ N3 C2 SING N N 8 CFZ C2 O2 DOUB N N 9 CFZ C4 N3 DOUB N N 10 CFZ N4 C4 SING N N 11 CFZ C4 C5 SING N N 12 CFZ N4 HN4 SING N N 13 CFZ N4 HN4A SING N N 14 CFZ C5 C6 DOUB N N 15 CFZ C5 H5 SING N N 16 CFZ C6 H6 SING N N 17 CFZ "C2'" "C1'" SING N N 18 CFZ "C1'" "O4'" SING N N 19 CFZ "C1'" "H1'" SING N N 20 CFZ O1P HO1P SING N N 21 CFZ "C3'" "C2'" SING N N 22 CFZ "C2'" "F2'" SING N N 23 CFZ "C2'" "H2'" SING N N 24 CFZ "C3'" "O3'" SING N N 25 CFZ "C3'" "C4'" SING N N 26 CFZ "C3'" "H3'" SING N N 27 CFZ "O3'" "HO3'" SING N N 28 CFZ O3P HO3P SING N N 29 CFZ "O4'" "C4'" SING N N 30 CFZ "C5'" "C4'" SING N N 31 CFZ "C4'" "H4'" SING N N 32 CFZ "O5'" "C5'" SING N N 33 CFZ "C5'" "H5'" SING N N 34 CFZ "C5'" "H5'A" SING N N 35 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor CFZ SMILES ACDLabs 12.01 "O=P(O)(O)OCC2OC(N1C(=O)N=C(N)C=C1)C(F)C2O" CFZ SMILES_CANONICAL CACTVS 3.370 "NC1=NC(=O)N(C=C1)[C@@H]2O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]2F" CFZ SMILES CACTVS 3.370 "NC1=NC(=O)N(C=C1)[CH]2O[CH](CO[P](O)(O)=O)[CH](O)[CH]2F" CFZ SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "C1=CN(C(=O)N=C1N)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)F" CFZ SMILES "OpenEye OEToolkits" 1.7.0 "C1=CN(C(=O)N=C1N)C2C(C(C(O2)COP(=O)(O)O)O)F" CFZ InChI InChI 1.03 "InChI=1S/C9H13FN3O7P/c10-6-7(14)4(3-19-21(16,17)18)20-8(6)13-2-1-5(11)12-9(13)15/h1-2,4,6-8,14H,3H2,(H2,11,12,15)(H2,16,17,18)/t4-,6-,7-,8-/m1/s1" CFZ InChIKey InChI 1.03 KTAATIGPZHTGOP-XVFCMESISA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier CFZ "SYSTEMATIC NAME" ACDLabs 12.01 ;2'-deoxy-2'-fluorocytidine 5'-(dihydrogen phosphate) ; CFZ "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "[(2R,3R,4R,5R)-5-(4-azanyl-2-oxo-pyrimidin-1-yl)-4-fluoro-3-hydroxy-oxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site CFZ "Create component" 2010-04-13 PDBJ CFZ "Modify descriptor" 2011-06-04 RCSB #