data_CG2 # _chem_comp.id CG2 _chem_comp.name "CYTIDYL-2'-5'-PHOSPHO-GUANOSINE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H25 N8 O12 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2003-06-28 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 588.422 _chem_comp.one_letter_code ? _chem_comp.three_letter_code CG2 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal CG2 N1G N1G N 0 1 N N N 9.333 44.292 -1.379 8.409 -1.186 1.125 N1G CG2 1 CG2 C2G C2G C 0 1 N N N 8.009 43.565 -1.398 8.092 0.138 1.059 C2G CG2 2 CG2 N2G N2G N 0 1 N N N 7.895 42.487 -2.180 9.062 1.070 1.331 N2G CG2 3 CG2 N3G N3G N 0 1 N N N 6.992 43.977 -0.669 6.886 0.548 0.736 N3G CG2 4 CG2 C4G C4G C 0 1 Y N N 7.281 45.110 0.075 5.909 -0.324 0.462 C4G CG2 5 CG2 C5G C5G C 0 1 Y N N 8.467 45.851 0.155 6.170 -1.698 0.518 C5G CG2 6 CG2 C6G C6G C 0 1 N N N 9.583 45.450 -0.600 7.473 -2.125 0.867 C6G CG2 7 CG2 O6G O6G O 0 1 N N N 10.675 45.985 -0.634 7.745 -3.312 0.929 O6G CG2 8 CG2 N7G N7G N 0 1 Y N N 8.321 46.920 1.024 5.020 -2.339 0.200 N7G CG2 9 CG2 C8G C8G C 0 1 Y N N 7.092 46.821 1.454 4.091 -1.462 -0.043 C8G CG2 10 CG2 N9G N9G N 0 1 Y N N 6.405 45.746 0.920 4.593 -0.202 0.106 N9G CG2 11 CG2 "CA'" CA* C 0 1 N N R 5.012 45.307 1.167 3.858 1.052 -0.080 "CA'" CG2 12 CG2 "CB'" CB* C 0 1 N N R 4.858 44.242 2.270 4.039 1.572 -1.523 "CB'" CG2 13 CG2 "OB'" OB* O 0 1 N N N 3.895 43.275 1.861 5.050 2.580 -1.576 "OB'" CG2 14 CG2 "CC'" CC* C 0 1 N N S 4.436 45.094 3.446 2.658 2.170 -1.880 "CC'" CG2 15 CG2 "OC'" OC* O 0 1 N N N 3.818 44.362 4.488 2.774 3.566 -2.161 "OC'" CG2 16 CG2 "CD'" CD* C 0 1 N N R 3.501 46.093 2.799 1.810 1.943 -0.609 "CD'" CG2 17 CG2 "OD'" OD* O 0 1 N N N 4.180 46.413 1.540 2.439 0.827 0.060 "OD'" CG2 18 CG2 "CE'" CE* C 0 1 N N N 3.291 47.345 3.618 0.368 1.596 -0.983 "CE'" CG2 19 CG2 "OE'" OE* O 0 1 N N N 4.514 48.104 3.714 -0.407 1.433 0.207 "OE'" CG2 20 CG2 P P P 0 1 N N R 4.580 49.448 4.584 -1.905 1.071 -0.259 P CG2 21 CG2 O1P O1P O 0 1 N N N 4.036 49.175 5.968 -2.398 2.113 -1.187 O1P CG2 22 CG2 O2P O2P O 0 1 N N N 6.008 49.932 4.447 -1.905 -0.355 -1.005 O2P CG2 23 CG2 "O5'" O5* O 0 1 N N N 3.588 54.934 -0.202 -8.829 1.076 1.044 "O5'" CG2 24 CG2 "C5'" C5* C 0 1 N N N 4.542 54.198 0.638 -7.617 1.705 0.622 "C5'" CG2 25 CG2 "C4'" C4* C 0 1 N N R 3.810 53.234 1.575 -6.443 1.139 1.423 "C4'" CG2 26 CG2 "O4'" O4* O 0 1 N N N 3.040 52.236 0.824 -6.235 -0.242 1.082 "O4'" CG2 27 CG2 "C3'" C3* C 0 1 N N R 4.752 52.439 2.472 -5.150 1.898 1.066 "C3'" CG2 28 CG2 "O3'" O3* O 0 1 N N N 4.933 53.143 3.720 -4.601 2.530 2.224 "O3'" CG2 29 CG2 "C2'" C2* C 0 1 N N R 4.085 51.051 2.615 -4.195 0.797 0.545 "C2'" CG2 30 CG2 "O2'" O2* O 0 1 N N N 3.665 50.557 3.856 -2.866 1.003 1.031 "O2'" CG2 31 CG2 "C1'" C1* C 0 1 N N R 2.996 51.015 1.540 -4.814 -0.487 1.155 "C1'" CG2 32 CG2 N1U N1U N 0 1 N N N 3.147 49.883 0.584 -4.451 -1.666 0.365 N1U CG2 33 CG2 C2U C2U C 0 1 N N N 2.056 48.899 0.408 -4.823 -1.746 -0.926 C2U CG2 34 CG2 O2U O2U O 0 1 N N N 0.998 48.964 1.032 -5.455 -0.831 -1.427 O2U CG2 35 CG2 N3U N3U N 0 1 N N N 2.274 47.791 -0.567 -4.502 -2.804 -1.669 N3U CG2 36 CG2 C4U C4U C 0 1 N N N 3.397 47.678 -1.263 -3.815 -3.813 -1.149 C4U CG2 37 CG2 C5U C5U C 0 1 N N N 4.475 48.569 -1.149 -3.416 -3.762 0.202 C5U CG2 38 CG2 C6U C6U C 0 1 N N N 4.388 49.643 -0.273 -3.745 -2.678 0.943 C6U CG2 39 CG2 N4C N4C N 0 1 N N N 3.468 46.590 -2.140 -3.494 -4.903 -1.925 N4C CG2 40 CG2 HNG1 1HNG H 0 0 N N N 10.124 43.974 -1.938 9.309 -1.455 1.366 HNG1 CG2 41 CG2 H2G1 1H2G H 0 0 N N N 8.669 42.185 -2.727 8.853 2.016 1.284 H2G1 CG2 42 CG2 H2G2 2H2G H 0 0 N N N 7.036 41.986 -2.215 9.956 0.783 1.575 H2G2 CG2 43 CG2 H8G H8G H 0 1 N N N 6.662 47.500 2.147 3.073 -1.696 -0.321 H8G CG2 44 CG2 "HC'" "HC'" H 0 1 N N N 4.704 44.861 0.210 4.197 1.799 0.638 "HC'" CG2 45 CG2 HCA HCA H 0 1 N N N 5.749 43.642 2.505 4.285 0.750 -2.196 HCA CG2 46 CG2 "HO'" "HO'" H 0 1 N N N 2.984 43.632 2.012 5.072 2.906 -2.486 "HO'" CG2 47 CG2 HCB HCB H 0 1 N N N 5.290 45.557 3.962 2.221 1.645 -2.729 HCB CG2 48 CG2 HOA HOA H 0 1 N N N 2.834 44.425 4.398 3.311 3.646 -2.962 HOA CG2 49 CG2 HCC HCC H 0 1 N N N 2.490 45.677 2.680 1.834 2.828 0.027 HCC CG2 50 CG2 "HC'1" "1HC'" H 0 0 N N N 2.519 47.964 3.139 -0.055 2.400 -1.585 "HC'1" CG2 51 CG2 "HC'2" "2HC'" H 0 0 N N N 2.975 47.055 4.631 0.354 0.668 -1.555 "HC'2" CG2 52 CG2 H2P H2P H 0 1 N N N 6.617 49.153 4.389 -1.578 -1.004 -0.367 H2P CG2 53 CG2 HOB HOB H 0 1 N N N 3.022 54.292 -0.700 -9.542 1.460 0.516 HOB CG2 54 CG2 HCA1 1HCA H 0 0 N N N 5.224 53.625 -0.008 -7.688 2.780 0.792 HCA1 CG2 55 CG2 HCA2 2HCA H 0 0 N N N 5.107 54.920 1.246 -7.459 1.514 -0.439 HCA2 CG2 56 CG2 HCD HCD H 0 1 N N N 3.162 53.883 2.182 -6.643 1.231 2.490 HCD CG2 57 CG2 HCE HCE H 0 1 N N N 5.767 52.317 2.067 -5.344 2.635 0.286 HCE CG2 58 CG2 HOC HOC H 0 1 N N N 4.049 53.361 4.107 -5.237 3.203 2.503 HOC CG2 59 CG2 HCG HCG H 0 1 N N N 4.898 50.321 2.487 -4.207 0.754 -0.544 HCG CG2 60 CG2 HCF HCF H 0 1 N N N 2.031 50.871 2.049 -4.499 -0.609 2.192 HCF CG2 61 CG2 H5U H5U H 0 1 N N N 5.352 48.423 -1.729 -2.856 -4.576 0.639 H5U CG2 62 CG2 H6U H6U H 0 1 N N N 5.206 50.315 -0.197 -3.450 -2.615 1.980 H6U CG2 63 CG2 H4C1 1H4C H 0 0 N N N 2.703 45.958 -2.212 -2.991 -5.639 -1.543 H4C1 CG2 64 CG2 H4C2 2H4C H 0 0 N N N 4.284 46.448 -2.692 -3.770 -4.935 -2.854 H4C2 CG2 65 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal CG2 N1G C2G SING N N 1 CG2 N1G C6G SING N N 2 CG2 N1G HNG1 SING N N 3 CG2 C2G N2G SING N N 4 CG2 C2G N3G DOUB N N 5 CG2 N2G H2G1 SING N N 6 CG2 N2G H2G2 SING N N 7 CG2 N3G C4G SING N N 8 CG2 C4G C5G DOUB Y N 9 CG2 C4G N9G SING Y N 10 CG2 C5G C6G SING N N 11 CG2 C5G N7G SING Y N 12 CG2 C6G O6G DOUB N N 13 CG2 N7G C8G DOUB Y N 14 CG2 C8G N9G SING Y N 15 CG2 C8G H8G SING N N 16 CG2 N9G "CA'" SING N N 17 CG2 "CA'" "CB'" SING N N 18 CG2 "CA'" "OD'" SING N N 19 CG2 "CA'" "HC'" SING N N 20 CG2 "CB'" "OB'" SING N N 21 CG2 "CB'" "CC'" SING N N 22 CG2 "CB'" HCA SING N N 23 CG2 "OB'" "HO'" SING N N 24 CG2 "CC'" "OC'" SING N N 25 CG2 "CC'" "CD'" SING N N 26 CG2 "CC'" HCB SING N N 27 CG2 "OC'" HOA SING N N 28 CG2 "CD'" "OD'" SING N N 29 CG2 "CD'" "CE'" SING N N 30 CG2 "CD'" HCC SING N N 31 CG2 "CE'" "OE'" SING N N 32 CG2 "CE'" "HC'1" SING N N 33 CG2 "CE'" "HC'2" SING N N 34 CG2 "OE'" P SING N N 35 CG2 P O1P DOUB N N 36 CG2 P O2P SING N N 37 CG2 P "O2'" SING N N 38 CG2 O2P H2P SING N N 39 CG2 "O5'" "C5'" SING N N 40 CG2 "O5'" HOB SING N N 41 CG2 "C5'" "C4'" SING N N 42 CG2 "C5'" HCA1 SING N N 43 CG2 "C5'" HCA2 SING N N 44 CG2 "C4'" "O4'" SING N N 45 CG2 "C4'" "C3'" SING N N 46 CG2 "C4'" HCD SING N N 47 CG2 "O4'" "C1'" SING N N 48 CG2 "C3'" "O3'" SING N N 49 CG2 "C3'" "C2'" SING N N 50 CG2 "C3'" HCE SING N N 51 CG2 "O3'" HOC SING N N 52 CG2 "C2'" "O2'" SING N N 53 CG2 "C2'" "C1'" SING N N 54 CG2 "C2'" HCG SING N N 55 CG2 "C1'" N1U SING N N 56 CG2 "C1'" HCF SING N N 57 CG2 N1U C2U SING N N 58 CG2 N1U C6U SING N N 59 CG2 C2U O2U DOUB N N 60 CG2 C2U N3U SING N N 61 CG2 N3U C4U DOUB N N 62 CG2 C4U C5U SING N N 63 CG2 C4U N4C SING N N 64 CG2 C5U C6U DOUB N N 65 CG2 C5U H5U SING N N 66 CG2 C6U H6U SING N N 67 CG2 N4C H4C1 SING N N 68 CG2 N4C H4C2 SING N N 69 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor CG2 SMILES ACDLabs 10.04 "O=C1N=C(N)C=CN1C5OC(CO)C(O)C5OP(=O)(O)OCC4OC(n3cnc2c3N=C(N)NC2=O)C(O)C4O" CG2 SMILES_CANONICAL CACTVS 3.341 "NC1=Nc2n(cnc2C(=O)N1)[C@@H]3O[C@H](CO[P@](O)(=O)O[C@@H]4[C@H](O)[C@@H](CO)O[C@H]4N5C=CC(=NC5=O)N)[C@@H](O)[C@H]3O" CG2 SMILES CACTVS 3.341 "NC1=Nc2n(cnc2C(=O)N1)[CH]3O[CH](CO[P](O)(=O)O[CH]4[CH](O)[CH](CO)O[CH]4N5C=CC(=NC5=O)N)[CH](O)[CH]3O" CG2 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc2c(n1[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@@](=O)(O)O[C@@H]4[C@@H]([C@H](O[C@H]4N5C=CC(=NC5=O)N)CO)O)O)O)N=C(NC2=O)N" CG2 SMILES "OpenEye OEToolkits" 1.5.0 "c1nc2c(n1C3C(C(C(O3)COP(=O)(O)OC4C(C(OC4N5C=CC(=NC5=O)N)CO)O)O)O)N=C(NC2=O)N" CG2 InChI InChI 1.03 ;InChI=1S/C19H25N8O12P/c20-8-1-2-26(19(33)23-8)17-13(11(30)6(3-28)37-17)39-40(34,35)36-4-7-10(29)12(31)16(38-7)27-5-22-9-14(27)24-18(21)25-15(9)32/h1-2,5-7,10-13,16-17,28-31H,3-4H2,(H,34,35)(H2,20,23,33)(H3,21,24,25,32)/t6-,7-,10-,11-,12-,13-,16-,17-/m1/s1 ; CG2 InChIKey InChI 1.03 QZDUXDLOEVJGDG-VMIOUTBZSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier CG2 "SYSTEMATIC NAME" ACDLabs 10.04 "[(2R,3S,4R,5R)-5-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl (2R,3R,4R,5R)-2-(4-amino-2-oxopyrimidin-1(2H)-yl)-4-hydroxy-5-(hydroxymethyl)tetrahydrofuran-3-yl hydrogen (R)-phosphate (non-preferred name)" CG2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,4R,5R)-5-(2-amino-6-oxo-1H-purin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methyl [(2R,3R,4R,5R)-2-(4-amino-2-oxo-pyrimidin-1-yl)-4-hydroxy-5-(hydroxymethyl)oxolan-3-yl] hydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site CG2 "Create component" 2003-06-28 EBI CG2 "Modify descriptor" 2011-06-04 RCSB #