data_CH5
#
_chem_comp.id CH5
_chem_comp.name "2-(((R)-2,3-DIHYDROXYPROPYL)PHOSPHORYLOXY)-N,N,N-TRIMETHYLETHANAMINIUM"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C8 H21 N O6 P"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms GLYCERO-3-PHOSPHOCHOLINE
_chem_comp.pdbx_formal_charge 1
_chem_comp.pdbx_initial_date 2005-08-12
_chem_comp.pdbx_modified_date 2021-03-01
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 258.229
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code CH5
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 2AG2
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
CH5 C1 C1 C 0 1 N N N 57.557 37.972 59.044 2.485 -0.330 -0.144 C1 CH5 1
CH5 C2 C2 C 0 1 N N R 56.854 39.137 58.329 3.668 0.522 0.323 C2 CH5 2
CH5 C3 C3 C 0 1 N N N 56.371 38.827 56.888 4.961 -0.026 -0.283 C3 CH5 3
CH5 C4 C4 C 0 1 N N N 55.785 35.255 63.064 -2.331 -1.091 -0.024 C4 CH5 4
CH5 C5 C5 C 0 1 N N N 54.232 35.058 63.079 -3.694 -0.641 0.506 C5 CH5 5
CH5 C6 C6 C 0 1 N N N 54.412 32.540 63.490 -3.896 0.737 -1.447 C6 CH5 6
CH5 C7 C7 C 0 1 N N N 52.329 33.552 62.950 -3.013 1.658 0.584 C7 CH5 7
CH5 C8 C8 C 0 1 N N N 53.238 33.963 65.055 -5.341 1.101 0.432 C8 CH5 8
CH5 N N N 1 1 N N N 53.587 33.772 63.637 -3.986 0.713 0.019 N CH5 9
CH5 O2 O2 O 0 1 N N N 55.719 39.613 59.212 3.478 1.873 -0.102 O2 CH5 10
CH5 O3 O3 O 0 1 N N N 54.932 39.039 56.621 6.077 0.695 0.244 O3 CH5 11
CH5 O1P O1P O 0 1 N N N 55.237 36.288 60.103 0.052 -0.770 -1.502 O1P CH5 12
CH5 O2P O2P O 0 1 N N N 57.502 35.381 60.754 0.349 -2.343 0.450 O2P CH5 13
CH5 O3P O3P O 0 1 N N N 57.186 37.911 60.475 1.294 0.109 0.512 O3P CH5 14
CH5 O4P O4P O 0 1 N N N 56.098 36.589 62.477 -1.302 -0.301 0.576 O4P CH5 15
CH5 P P P 0 1 N N S 56.518 36.552 60.957 0.097 -0.825 -0.024 P CH5 16
CH5 H11 1H1 H 0 1 N N N 57.362 37.001 58.530 2.671 -1.375 0.102 H11 CH5 17
CH5 H12 2H1 H 0 1 N N N 58.663 38.019 58.911 2.366 -0.226 -1.222 H12 CH5 18
CH5 H2 H2 H 0 1 N N N 57.609 39.943 58.179 3.733 0.488 1.410 H2 CH5 19
CH5 H31 1H3 H 0 1 N N N 56.979 39.405 56.154 5.061 -1.083 -0.032 H31 CH5 20
CH5 H32 2H3 H 0 1 N N N 56.656 37.785 56.610 4.933 0.089 -1.366 H32 CH5 21
CH5 H41 1H4 H 0 1 N N N 56.240 35.116 64.072 -2.173 -2.141 0.222 H41 CH5 22
CH5 H42 2H4 H 0 1 N N N 56.313 34.425 62.539 -2.302 -0.963 -1.107 H42 CH5 23
CH5 H51 1H5 H 0 1 N N N 53.781 35.927 63.612 -3.677 -0.640 1.595 H51 CH5 24
CH5 H52 2H5 H 0 1 N N N 53.857 35.206 62.039 -4.464 -1.328 0.155 H52 CH5 25
CH5 H61 1H6 H 0 1 N N N 53.945 31.610 63.893 -2.891 0.449 -1.755 H61 CH5 26
CH5 H62 2H6 H 0 1 N N N 54.700 32.394 62.422 -4.618 0.036 -1.867 H62 CH5 27
CH5 H63 3H6 H 0 1 N N N 55.418 32.694 63.943 -4.113 1.742 -1.809 H63 CH5 28
CH5 H71 1H7 H 0 1 N N N 51.862 32.622 63.353 -3.331 2.678 0.370 H71 CH5 29
CH5 H72 2H7 H 0 1 N N N 51.648 34.433 63.011 -2.952 1.514 1.663 H72 CH5 30
CH5 H73 3H7 H 0 1 N N N 52.445 33.525 61.841 -2.034 1.481 0.138 H73 CH5 31
CH5 H81 1H8 H 0 1 N N N 52.771 33.033 65.458 -6.063 0.400 0.013 H81 CH5 32
CH5 H82 2H8 H 0 1 N N N 54.114 34.289 65.662 -5.408 1.083 1.520 H82 CH5 33
CH5 H83 3H8 H 0 1 N N N 52.591 34.857 65.210 -5.558 2.106 0.071 H83 CH5 34
CH5 HO2 HO2 H 0 1 N N N 55.284 40.333 58.770 3.426 1.858 -1.067 HO2 CH5 35
CH5 HO3 HO3 H 0 1 N N N 54.636 38.849 55.738 6.870 0.319 -0.162 HO3 CH5 36
CH5 H2P H2P H 0 1 N N N 58.281 35.541 61.273 0.371 -2.335 1.416 H2P CH5 37
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
CH5 C1 C2 SING N N 1
CH5 C1 O3P SING N N 2
CH5 C1 H11 SING N N 3
CH5 C1 H12 SING N N 4
CH5 C2 C3 SING N N 5
CH5 C2 O2 SING N N 6
CH5 C2 H2 SING N N 7
CH5 C3 O3 SING N N 8
CH5 C3 H31 SING N N 9
CH5 C3 H32 SING N N 10
CH5 C4 C5 SING N N 11
CH5 C4 O4P SING N N 12
CH5 C4 H41 SING N N 13
CH5 C4 H42 SING N N 14
CH5 C5 N SING N N 15
CH5 C5 H51 SING N N 16
CH5 C5 H52 SING N N 17
CH5 C6 N SING N N 18
CH5 C6 H61 SING N N 19
CH5 C6 H62 SING N N 20
CH5 C6 H63 SING N N 21
CH5 C7 N SING N N 22
CH5 C7 H71 SING N N 23
CH5 C7 H72 SING N N 24
CH5 C7 H73 SING N N 25
CH5 C8 N SING N N 26
CH5 C8 H81 SING N N 27
CH5 C8 H82 SING N N 28
CH5 C8 H83 SING N N 29
CH5 O2 HO2 SING N N 30
CH5 O3 HO3 SING N N 31
CH5 O1P P DOUB N N 32
CH5 O2P P SING N N 33
CH5 O2P H2P SING N N 34
CH5 O3P P SING N N 35
CH5 O4P P SING N N 36
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
CH5 SMILES ACDLabs 10.04 "O=P(OCC(O)CO)(OCC[N+](C)(C)C)O"
CH5 SMILES_CANONICAL CACTVS 3.341 "C[N+](C)(C)CCO[P@@](O)(=O)OC[C@H](O)CO"
CH5 SMILES CACTVS 3.341 "C[N+](C)(C)CCO[P](O)(=O)OC[CH](O)CO"
CH5 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C[N+](C)(C)CCO[P@](=O)(O)OC[C@@H](CO)O"
CH5 SMILES "OpenEye OEToolkits" 1.5.0 "C[N+](C)(C)CCOP(=O)(O)OCC(CO)O"
CH5 InChI InChI 1.03 "InChI=1S/C8H20NO6P/c1-9(2,3)4-5-14-16(12,13)15-7-8(11)6-10/h8,10-11H,4-7H2,1-3H3/p+1/t8-/m1/s1"
CH5 InChIKey InChI 1.03 SUHOQUVVVLNYQR-MRVPVSSYSA-O
# #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
CH5 "SYSTEMATIC NAME" ACDLabs 10.04 "2-{[(S)-{[(2R)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-N,N,N-trimethylethanaminium"
CH5 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "2-[[(2R)-2,3-dihydroxypropoxy]-hydroxy-phosphoryl]oxyethyl-trimethyl-azanium"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
CH5 "Create component" 2005-08-12 RCSB
CH5 "Modify descriptor" 2011-06-04 RCSB
CH5 "Modify synonyms" 2021-03-01 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id CH5
_pdbx_chem_comp_synonyms.name GLYCERO-3-PHOSPHOCHOLINE
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
##