data_CI0 # _chem_comp.id CI0 _chem_comp.name "1-(1-{(2S)-1-[(3R,5R)-3,5-dimethylpiperazin-1-yl]-1-oxopropan-2-yl}piperidin-4-yl)-1,3-dihydro-2H-benzimidazol-2-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H31 N5 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-11-22 _chem_comp.pdbx_modified_date 2023-01-20 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 385.503 _chem_comp.one_letter_code ? _chem_comp.three_letter_code CI0 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7SVP _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal CI0 N1 N1 N 0 1 N N N 41.148 -20.979 50.110 -4.172 -0.570 0.001 N1 CI0 1 CI0 N3 N2 N 0 1 N N N 42.523 -15.268 54.630 3.487 -0.217 0.044 N3 CI0 2 CI0 C4 C1 C 0 1 N N N 39.323 -20.443 53.116 -2.291 -1.510 -2.412 C4 CI0 3 CI0 C5 C2 C 0 1 N N N 41.781 -18.973 54.131 -0.274 0.185 0.279 C5 CI0 4 CI0 C6 C3 C 0 1 N N N 42.606 -17.741 54.477 1.152 -0.085 0.766 C6 CI0 5 CI0 C7 C4 C 0 1 N N N 40.349 -17.729 52.686 0.287 -0.558 -1.958 C7 CI0 6 CI0 C8 C5 C 0 1 N N N 41.087 -16.428 52.976 1.730 -0.850 -1.538 C8 CI0 7 CI0 C10 C6 C 0 1 Y N N 43.648 -14.772 53.957 4.571 0.657 0.029 C10 CI0 8 CI0 C13 C7 C 0 1 Y N N 45.802 -13.302 53.105 7.040 1.892 0.248 C13 CI0 9 CI0 C15 C8 C 0 1 Y N N 44.009 -13.591 54.610 5.663 -0.045 0.542 C15 CI0 10 CI0 C17 C9 C 0 1 N N R 41.812 -21.062 47.745 -5.319 1.570 -0.218 C17 CI0 11 CI0 C20 C10 C 0 1 N N N 44.942 -21.389 49.857 -4.639 0.970 2.473 C20 CI0 12 CI0 C21 C11 C 0 1 N N N 42.500 -21.368 50.524 -5.088 -1.038 1.052 C21 CI0 13 CI0 C1 C12 C 0 1 N N N 40.797 -21.487 48.781 -4.676 0.405 -0.978 C1 CI0 14 CI0 C11 C13 C 0 1 Y N N 44.363 -15.230 52.866 4.724 1.976 -0.372 C11 CI0 15 CI0 C12 C14 C 0 1 Y N N 45.448 -14.470 52.453 5.957 2.589 -0.262 C12 CI0 16 CI0 C14 C15 C 0 1 Y N N 45.089 -12.836 54.198 6.897 0.578 0.649 C14 CI0 17 CI0 C16 C16 C 0 1 N N N 42.203 -14.413 55.674 3.900 -1.397 0.544 C16 CI0 18 CI0 C18 C17 C 0 1 N N N 41.789 -19.561 47.489 -5.984 2.517 -1.219 C18 CI0 19 CI0 C19 C18 C 0 1 N N R 43.528 -20.955 49.494 -5.719 0.184 1.728 C19 CI0 20 CI0 C2 C19 C 0 1 N N N 40.329 -20.207 50.848 -2.902 -1.017 -0.059 C2 CI0 21 CI0 C3 C20 C 0 1 N N S 40.602 -20.133 52.347 -2.013 -0.610 -1.206 C3 CI0 22 CI0 C9 C21 C 0 1 N N N 41.752 -16.483 54.349 2.126 0.096 -0.401 C9 CI0 23 CI0 N2 N3 N 0 1 N N N 41.243 -18.885 52.773 -0.606 -0.746 -0.808 N2 CI0 24 CI0 N4 N4 N 0 1 N N N 43.115 -13.395 55.651 5.208 -1.325 0.853 N4 CI0 25 CI0 N5 N5 N 0 1 N N N 43.158 -21.481 48.169 -6.333 1.041 0.705 N5 CI0 26 CI0 O1 O1 O 0 1 N N N 39.382 -19.611 50.347 -2.474 -1.748 0.809 O1 CI0 27 CI0 O2 O2 O 0 1 N N N 41.271 -14.559 56.459 3.198 -2.379 0.693 O2 CI0 28 CI0 H1 H1 H 0 1 N N N 39.522 -20.389 54.197 -1.970 -2.527 -2.187 H1 CI0 29 CI0 H2 H2 H 0 1 N N N 38.548 -19.710 52.849 -3.359 -1.506 -2.629 H2 CI0 30 CI0 H3 H3 H 0 1 N N N 38.976 -21.454 52.857 -1.742 -1.138 -3.277 H3 CI0 31 CI0 H4 H4 H 0 1 N N N 40.947 -19.058 54.843 -0.972 0.043 1.104 H4 CI0 32 CI0 H5 H5 H 0 1 N N N 42.420 -19.865 54.207 -0.346 1.209 -0.086 H5 CI0 33 CI0 H6 H6 H 0 1 N N N 42.973 -17.828 55.510 1.403 0.616 1.562 H6 CI0 34 CI0 H7 H7 H 0 1 N N N 43.461 -17.671 53.789 1.221 -1.105 1.144 H7 CI0 35 CI0 H8 H8 H 0 1 N N N 39.925 -17.681 51.672 0.213 0.470 -2.312 H8 CI0 36 CI0 H9 H9 H 0 1 N N N 39.537 -17.850 53.418 -0.003 -1.240 -2.758 H9 CI0 37 CI0 H10 H10 H 0 1 N N N 41.858 -16.270 52.207 1.808 -1.882 -1.197 H10 CI0 38 CI0 H11 H11 H 0 1 N N N 40.371 -15.593 52.954 2.395 -0.695 -2.388 H11 CI0 39 CI0 H12 H12 H 0 1 N N N 46.655 -12.740 52.754 8.001 2.378 0.331 H12 CI0 40 CI0 H13 H13 H 0 1 N N N 41.568 -21.570 46.800 -4.560 2.112 0.346 H13 CI0 41 CI0 H14 H14 H 0 1 N N N 45.206 -20.990 50.848 -3.877 1.299 1.766 H14 CI0 42 CI0 H15 H15 H 0 1 N N N 44.994 -22.488 49.879 -5.089 1.839 2.953 H15 CI0 43 CI0 H16 H16 H 0 1 N N N 45.648 -21.003 49.107 -4.182 0.333 3.229 H16 CI0 44 CI0 H17 H17 H 0 1 N N N 42.536 -22.460 50.649 -5.869 -1.656 0.608 H17 CI0 45 CI0 H18 H18 H 0 1 N N N 42.736 -20.881 51.482 -4.534 -1.621 1.788 H18 CI0 46 CI0 H19 H19 H 0 1 N N N 39.809 -21.095 48.497 -3.850 0.775 -1.585 H19 CI0 47 CI0 H20 H20 H 0 1 N N N 40.759 -22.586 48.816 -5.420 -0.070 -1.617 H20 CI0 48 CI0 H21 H21 H 0 1 N N N 44.088 -16.142 52.356 3.882 2.522 -0.770 H21 CI0 49 CI0 H22 H22 H 0 1 N N N 46.029 -14.797 51.604 6.077 3.616 -0.574 H22 CI0 50 CI0 H23 H23 H 0 1 N N N 45.366 -11.923 54.705 7.744 0.038 1.045 H23 CI0 51 CI0 H24 H24 H 0 1 N N N 40.780 -19.258 47.173 -6.452 3.342 -0.683 H24 CI0 52 CI0 H25 H25 H 0 1 N N N 42.060 -19.028 48.412 -5.232 2.908 -1.904 H25 CI0 53 CI0 H26 H26 H 0 1 N N N 42.511 -19.313 46.697 -6.742 1.974 -1.784 H26 CI0 54 CI0 H27 H27 H 0 1 N N N 43.523 -19.856 49.440 -6.482 -0.145 2.434 H27 CI0 55 CI0 H28 H28 H 0 1 N N N 41.304 -20.949 52.574 -2.217 0.428 -1.473 H28 CI0 56 CI0 H29 H29 H 0 1 N N N 40.949 -16.556 55.097 2.086 1.127 -0.754 H29 CI0 57 CI0 H31 H31 H 0 1 N N N 43.134 -12.625 56.289 5.743 -2.041 1.229 H31 CI0 58 CI0 H32 H32 H 0 1 N N N 43.186 -22.480 48.203 -6.857 1.790 1.134 H32 CI0 59 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal CI0 C18 C17 SING N N 1 CI0 C17 N5 SING N N 2 CI0 C17 C1 SING N N 3 CI0 N5 C19 SING N N 4 CI0 C1 N1 SING N N 5 CI0 C19 C20 SING N N 6 CI0 C19 C21 SING N N 7 CI0 N1 C21 SING N N 8 CI0 N1 C2 SING N N 9 CI0 O1 C2 DOUB N N 10 CI0 C2 C3 SING N N 11 CI0 C3 N2 SING N N 12 CI0 C3 C4 SING N N 13 CI0 C12 C11 DOUB Y N 14 CI0 C12 C13 SING Y N 15 CI0 C7 N2 SING N N 16 CI0 C7 C8 SING N N 17 CI0 N2 C5 SING N N 18 CI0 C11 C10 SING Y N 19 CI0 C8 C9 SING N N 20 CI0 C13 C14 DOUB Y N 21 CI0 C10 C15 DOUB Y N 22 CI0 C10 N3 SING N N 23 CI0 C5 C6 SING N N 24 CI0 C14 C15 SING Y N 25 CI0 C9 C6 SING N N 26 CI0 C9 N3 SING N N 27 CI0 C15 N4 SING N N 28 CI0 N3 C16 SING N N 29 CI0 N4 C16 SING N N 30 CI0 C16 O2 DOUB N N 31 CI0 C4 H1 SING N N 32 CI0 C4 H2 SING N N 33 CI0 C4 H3 SING N N 34 CI0 C5 H4 SING N N 35 CI0 C5 H5 SING N N 36 CI0 C6 H6 SING N N 37 CI0 C6 H7 SING N N 38 CI0 C7 H8 SING N N 39 CI0 C7 H9 SING N N 40 CI0 C8 H10 SING N N 41 CI0 C8 H11 SING N N 42 CI0 C13 H12 SING N N 43 CI0 C17 H13 SING N N 44 CI0 C20 H14 SING N N 45 CI0 C20 H15 SING N N 46 CI0 C20 H16 SING N N 47 CI0 C21 H17 SING N N 48 CI0 C21 H18 SING N N 49 CI0 C1 H19 SING N N 50 CI0 C1 H20 SING N N 51 CI0 C11 H21 SING N N 52 CI0 C12 H22 SING N N 53 CI0 C14 H23 SING N N 54 CI0 C18 H24 SING N N 55 CI0 C18 H25 SING N N 56 CI0 C18 H26 SING N N 57 CI0 C19 H27 SING N N 58 CI0 C3 H28 SING N N 59 CI0 C9 H29 SING N N 60 CI0 N4 H31 SING N N 61 CI0 N5 H32 SING N N 62 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor CI0 SMILES ACDLabs 12.01 "CC(C(=O)N1CC(C)NC(C)C1)N1CCC(CC1)N1c2ccccc2NC1=O" CI0 InChI InChI 1.03 "InChI=1S/C21H31N5O2/c1-14-12-25(13-15(2)22-14)20(27)16(3)24-10-8-17(9-11-24)26-19-7-5-4-6-18(19)23-21(26)28/h4-7,14-17,22H,8-13H2,1-3H3,(H,23,28)/t14-,15-,16+/m1/s1" CI0 InChIKey InChI 1.03 LWPPVRZWNRKLJH-OAGGEKHMSA-N CI0 SMILES_CANONICAL CACTVS 3.385 "C[C@@H]1CN(C[C@@H](C)N1)C(=O)[C@H](C)N2CCC(CC2)N3C(=O)Nc4ccccc34" CI0 SMILES CACTVS 3.385 "C[CH]1CN(C[CH](C)N1)C(=O)[CH](C)N2CCC(CC2)N3C(=O)Nc4ccccc34" CI0 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H]1CN(C[C@H](N1)C)C(=O)[C@H](C)N2CCC(CC2)N3c4ccccc4NC3=O" CI0 SMILES "OpenEye OEToolkits" 2.0.7 "CC1CN(CC(N1)C)C(=O)C(C)N2CCC(CC2)N3c4ccccc4NC3=O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier CI0 "SYSTEMATIC NAME" ACDLabs 12.01 "1-(1-{(2S)-1-[(3R,5R)-3,5-dimethylpiperazin-1-yl]-1-oxopropan-2-yl}piperidin-4-yl)-1,3-dihydro-2H-benzimidazol-2-one" CI0 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "3-[1-[(2~{S})-1-[(3~{R},5~{R})-3,5-dimethylpiperazin-1-yl]-1-oxidanylidene-propan-2-yl]piperidin-4-yl]-1~{H}-benzimidazol-2-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site CI0 "Create component" 2021-11-22 RCSB CI0 "Initial release" 2023-01-25 RCSB #