data_CIF # _chem_comp.id CIF _chem_comp.name "methyl (1R,3S)-1-methyl-3-[[3-[[3-methyl-4-[(4-pyridin-3-ylpyrimidin-2-yl)amino]phenyl]carbamoyl]phenyl]carbamoyl]-4-oxidanylidene-cyclohexane-1-carboxylate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C33 H32 N6 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-07-17 _chem_comp.pdbx_modified_date 2024-07-19 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 592.644 _chem_comp.one_letter_code ? _chem_comp.three_letter_code CIF _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8PTA _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal CIF C16 C1 C 0 1 N N N N N N -3.365 -64.751 2.517 5.380 0.474 1.017 C16 CIF 1 CIF C7 C2 C 0 1 N N N N N N -2.342 -62.842 -0.369 6.921 0.109 -0.954 C7 CIF 2 CIF C14 C3 C 0 1 N N N N N N -4.144 -61.290 -0.698 9.369 0.103 -0.565 C14 CIF 3 CIF C15 C4 C 0 1 N N N N N N -5.692 -59.927 -2.078 11.039 -0.604 -2.111 C15 CIF 4 CIF C17 C5 C 0 1 Y N N N N N -2.247 -65.341 4.410 4.254 -1.600 0.713 C17 CIF 5 CIF C18 C6 C 0 1 Y N N N N N -2.914 -66.508 4.525 4.447 -2.903 0.268 C18 CIF 6 CIF C19 C7 C 0 1 Y N N N N N -2.529 -67.429 5.460 3.381 -3.640 -0.212 C19 CIF 7 CIF C20 C8 C 0 1 Y N N N N N -1.489 -67.189 6.308 2.117 -3.087 -0.252 C20 CIF 8 CIF C21 C9 C 0 1 Y N N N N N -0.829 -66.010 6.211 1.912 -1.780 0.192 C21 CIF 9 CIF C22 C10 C 0 1 Y N N N N N -1.206 -65.124 5.247 2.989 -1.036 0.676 C22 CIF 10 CIF C23 C11 C 0 1 N N N N N N 0.308 -65.712 7.122 0.560 -1.185 0.149 C23 CIF 11 CIF C26 C12 C 0 1 Y N N N N N 1.579 -64.116 8.215 -1.740 -1.311 -0.454 C26 CIF 12 CIF C27 C13 C 0 1 Y N N N N N 2.230 -62.993 7.847 -1.841 0.034 -0.787 C27 CIF 13 CIF C28 C14 C 0 1 Y N N N N N 3.299 -62.517 8.530 -3.084 0.618 -0.925 C28 CIF 14 CIF C29 C15 C 0 1 Y Y N N N N 3.760 -63.149 9.634 -4.233 -0.138 -0.730 C29 CIF 15 CIF C2 C16 C 0 1 N N S N N N -4.443 -63.813 2.103 6.480 1.287 1.649 C2 CIF 16 CIF C30 C17 C 0 1 Y N N N N N 3.092 -64.267 10.027 -4.131 -1.482 -0.397 C30 CIF 17 CIF C31 C18 C 0 1 Y N N N N N 2.016 -64.759 9.326 -2.888 -2.067 -0.259 C31 CIF 18 CIF C33 C19 C 0 1 Y N N N N N 5.860 -62.140 9.849 -6.575 -0.042 -0.162 C33 CIF 19 CIF C35 C20 C 0 1 Y N N N N N 7.605 -60.701 10.056 -7.387 -1.521 1.409 C35 CIF 20 CIF C36 C21 C 0 1 Y N N N N N 8.017 -60.972 8.780 -8.661 -1.015 1.218 C36 CIF 21 CIF C37 C22 C 0 1 Y N N N N N 7.302 -61.882 8.055 -8.835 0.019 0.293 C37 CIF 22 CIF C39 C23 C 0 1 N N N N N N 3.885 -61.279 7.977 -3.195 2.077 -1.286 C39 CIF 23 CIF C1 C24 C 0 1 N N N N N N -5.396 -64.515 1.215 6.437 2.701 1.115 C1 CIF 24 CIF C40 C25 C 0 1 Y N N N N N 7.634 -62.255 6.661 -10.179 0.599 0.056 C40 CIF 25 CIF C41 C26 C 0 1 Y N N N N N 8.708 -61.745 6.000 -10.354 1.633 -0.868 C41 CIF 26 CIF C42 C27 C 0 1 Y N N N N N 8.930 -62.127 4.706 -11.629 2.140 -1.053 C42 CIF 27 CIF C43 C28 C 0 1 Y N N N N N 8.086 -63.004 4.088 -12.678 1.613 -0.323 C43 CIF 28 CIF C45 C29 C 0 1 Y N N N N N 6.828 -63.119 5.973 -11.290 0.118 0.748 C45 CIF 29 CIF C6 C30 C 0 1 N N N N N N -5.898 -63.847 0.002 6.798 2.931 -0.336 C6 CIF 30 CIF C5 C31 C 0 1 N N N N N N -4.607 -63.676 -0.723 8.147 2.259 -0.615 C5 CIF 31 CIF C4 C32 C 0 1 N N R N N N -3.808 -62.599 -0.051 8.074 0.786 -0.209 C4 CIF 32 CIF C3 C33 C 0 1 N N N N N N -3.939 -62.547 1.463 7.839 0.672 1.303 C3 CIF 33 CIF N2 N1 N 0 1 N N N N N N -2.597 -64.422 3.522 5.336 -0.861 1.203 N2 CIF 34 CIF N25 N2 N 0 1 N N N N N N 0.528 -64.488 7.489 -0.479 -1.905 -0.320 N25 CIF 35 CIF N32 N3 N 0 1 N N N N N N 4.800 -62.733 10.364 -5.493 0.455 -0.870 N32 CIF 36 CIF N34 N4 N 0 1 Y N N N N N 6.549 -61.286 10.563 -6.380 -1.019 0.712 N34 CIF 37 CIF N38 N5 N 0 1 Y N N N N N 6.245 -62.444 8.623 -7.776 0.474 -0.372 N38 CIF 38 CIF N44 N6 N 0 1 Y N N N N N 7.052 -63.478 4.726 -12.483 0.637 0.543 N44 CIF 39 CIF O2 O1 O 0 1 N N N N N N -3.215 -65.801 1.921 4.531 1.020 0.345 O2 CIF 40 CIF O1 O2 O 0 1 N N N N N N -3.454 -60.307 -0.514 10.036 -0.415 0.299 O1 CIF 41 CIF O O3 O 0 1 N N N N N N -5.286 -61.199 -1.583 9.782 0.071 -1.842 O CIF 42 CIF O4 O4 O 0 1 N N N N N N -5.774 -65.642 1.478 6.123 3.624 1.828 O4 CIF 43 CIF O24 O5 O 0 1 N N N N N N 0.996 -66.595 7.533 0.384 -0.046 0.536 O24 CIF 44 CIF H1 H1 H 0 1 N N N N N N -1.728 -62.066 0.112 6.696 -0.848 -0.483 H1 CIF 45 CIF H2 H2 H 0 1 N N N N N N -2.044 -63.831 0.009 6.039 0.749 -0.916 H2 CIF 46 CIF H3 H3 H 0 1 N N N N N N -2.192 -62.805 -1.458 7.207 -0.055 -1.993 H3 CIF 47 CIF H4 H4 H 0 1 N N N N N N -6.569 -60.050 -2.730 11.255 -0.557 -3.178 H4 CIF 48 CIF H5 H5 H 0 1 N N N N N N -5.951 -59.271 -1.234 11.840 -0.115 -1.557 H5 CIF 49 CIF H6 H6 H 0 1 N N N N N N -4.869 -59.477 -2.652 10.966 -1.646 -1.800 H6 CIF 50 CIF H7 H7 H 0 1 N N N N N N -3.753 -66.715 3.878 5.434 -3.341 0.298 H7 CIF 51 CIF H8 H8 H 0 1 N N N N N N -3.060 -68.367 5.528 3.537 -4.652 -0.556 H8 CIF 52 CIF H9 H9 H 0 1 N N N N N N -1.197 -67.925 7.043 1.286 -3.666 -0.628 H9 CIF 53 CIF H10 H10 H 0 1 N N N N N N -0.648 -64.205 5.146 2.836 -0.024 1.021 H10 CIF 54 CIF H11 H11 H 0 1 N N N N N N 1.887 -62.454 6.976 -0.948 0.622 -0.938 H11 CIF 55 CIF H12 H12 H 0 1 N N N N N N -4.991 -63.522 3.011 6.349 1.301 2.731 H12 CIF 56 CIF H13 H13 H 0 1 N N N N N N 3.417 -64.784 10.918 -5.024 -2.071 -0.246 H13 CIF 57 CIF H14 H14 H 0 1 N N N N N N 1.519 -65.658 9.660 -2.809 -3.113 -0.001 H14 CIF 58 CIF H15 H15 H 0 1 N N N N N N 8.159 -59.993 10.655 -7.217 -2.316 2.119 H15 CIF 59 CIF H16 H16 H 0 1 N N N N N N 8.882 -60.481 8.359 -9.500 -1.406 1.773 H16 CIF 60 CIF H17 H17 H 0 1 N N N N N N 3.396 -60.406 8.433 -3.227 2.182 -2.371 H17 CIF 61 CIF H18 H18 H 0 1 N N N N N N 4.962 -61.253 8.198 -4.106 2.490 -0.854 H18 CIF 62 CIF H19 H19 H 0 1 N N N N N N 3.734 -61.257 6.888 -2.331 2.615 -0.895 H19 CIF 63 CIF H20 H20 H 0 1 N N N N N N 9.374 -61.050 6.489 -9.516 2.026 -1.424 H20 CIF 64 CIF H21 H21 H 0 1 N N N N N N 9.780 -61.732 4.169 -11.801 2.939 -1.758 H21 CIF 65 CIF H22 H22 H 0 1 N N N N N N 8.275 -63.306 3.068 -13.674 2.007 -0.464 H22 CIF 66 CIF H23 H23 H 0 1 N N N N N N 5.965 -63.527 6.477 -11.170 -0.683 1.462 H23 CIF 67 CIF H24 H24 H 0 1 N N N N N N -6.374 -62.882 0.230 6.032 2.495 -0.978 H24 CIF 68 CIF H25 H25 H 0 1 N N N N N N -6.603 -64.481 -0.556 6.872 4.001 -0.530 H25 CIF 69 CIF H26 H26 H 0 1 N N N N N N -4.805 -63.391 -1.767 8.376 2.332 -1.678 H26 CIF 70 CIF H27 H27 H 0 1 N N N N N N -4.044 -64.621 -0.701 8.927 2.756 -0.039 H27 CIF 71 CIF H28 H28 H 0 1 N N N N N N -2.947 -62.324 1.884 8.627 1.207 1.834 H28 CIF 72 CIF H29 H29 H 0 1 N N N N N N -4.636 -61.735 1.717 7.853 -0.379 1.594 H29 CIF 73 CIF H30 H30 H 0 1 N N N N N N -2.275 -63.480 3.620 6.055 -1.308 1.676 H30 CIF 74 CIF H31 H31 H 0 1 N N N N N N -0.128 -63.786 7.211 -0.353 -2.835 -0.564 H31 CIF 75 CIF H32 H32 H 0 1 N N N N N N 4.773 -62.879 11.353 -5.609 1.214 -1.462 H32 CIF 76 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal CIF C15 O SING N N 1 CIF O C14 SING N N 2 CIF C5 C4 SING N N 3 CIF C5 C6 SING N N 4 CIF C14 O1 DOUB N N 5 CIF C14 C4 SING N N 6 CIF C7 C4 SING N N 7 CIF C4 C3 SING N N 8 CIF C6 C1 SING N N 9 CIF C1 O4 DOUB N N 10 CIF C1 C2 SING N N 11 CIF C3 C2 SING N N 12 CIF O2 C16 DOUB N N 13 CIF C2 C16 SING N N 14 CIF C16 N2 SING N N 15 CIF N2 C17 SING N N 16 CIF C43 C42 DOUB Y N 17 CIF C43 N44 SING Y N 18 CIF C17 C18 DOUB Y N 19 CIF C17 C22 SING Y N 20 CIF C18 C19 SING Y N 21 CIF C42 C41 SING Y N 22 CIF N44 C45 DOUB Y N 23 CIF C22 C21 DOUB Y N 24 CIF C19 C20 DOUB Y N 25 CIF C45 C40 SING Y N 26 CIF C41 C40 DOUB Y N 27 CIF C21 C20 SING Y N 28 CIF C21 C23 SING N N 29 CIF C40 C37 SING N N 30 CIF C23 N25 SING N N 31 CIF C23 O24 DOUB N N 32 CIF N25 C26 SING N N 33 CIF C27 C26 DOUB Y N 34 CIF C27 C28 SING Y N 35 CIF C39 C28 SING N N 36 CIF C37 N38 DOUB Y N 37 CIF C37 C36 SING Y N 38 CIF C26 C31 SING Y N 39 CIF C28 C29 DOUB Y N 40 CIF N38 C33 SING Y N 41 CIF C36 C35 DOUB Y N 42 CIF C31 C30 DOUB Y N 43 CIF C29 C30 SING Y N 44 CIF C29 N32 SING N N 45 CIF C33 N32 SING N N 46 CIF C33 N34 DOUB Y N 47 CIF C35 N34 SING Y N 48 CIF C7 H1 SING N N 49 CIF C7 H2 SING N N 50 CIF C7 H3 SING N N 51 CIF C15 H4 SING N N 52 CIF C15 H5 SING N N 53 CIF C15 H6 SING N N 54 CIF C18 H7 SING N N 55 CIF C19 H8 SING N N 56 CIF C20 H9 SING N N 57 CIF C22 H10 SING N N 58 CIF C27 H11 SING N N 59 CIF C2 H12 SING N N 60 CIF C30 H13 SING N N 61 CIF C31 H14 SING N N 62 CIF C35 H15 SING N N 63 CIF C36 H16 SING N N 64 CIF C39 H17 SING N N 65 CIF C39 H18 SING N N 66 CIF C39 H19 SING N N 67 CIF C41 H20 SING N N 68 CIF C42 H21 SING N N 69 CIF C43 H22 SING N N 70 CIF C45 H23 SING N N 71 CIF C6 H24 SING N N 72 CIF C6 H25 SING N N 73 CIF C5 H26 SING N N 74 CIF C5 H27 SING N N 75 CIF C3 H28 SING N N 76 CIF C3 H29 SING N N 77 CIF N2 H30 SING N N 78 CIF N25 H31 SING N N 79 CIF N32 H32 SING N N 80 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor CIF InChI InChI 1.06 "InChI=1S/C33H32N6O5/c1-20-16-24(9-10-26(20)38-32-35-15-12-27(39-32)22-7-5-14-34-19-22)36-29(41)21-6-4-8-23(17-21)37-30(42)25-18-33(2,31(43)44-3)13-11-28(25)40/h4-10,12,14-17,19,25H,11,13,18H2,1-3H3,(H,36,41)(H,37,42)(H,35,38,39)/t25-,33+/m0/s1" CIF InChIKey InChI 1.06 LOKFZRXMKAWKTK-OGVWKLGRSA-N CIF SMILES_CANONICAL CACTVS 3.385 "COC(=O)[C@]1(C)CCC(=O)[C@H](C1)C(=O)Nc2cccc(c2)C(=O)Nc3ccc(Nc4nccc(n4)c5cccnc5)c(C)c3" CIF SMILES CACTVS 3.385 "COC(=O)[C]1(C)CCC(=O)[CH](C1)C(=O)Nc2cccc(c2)C(=O)Nc3ccc(Nc4nccc(n4)c5cccnc5)c(C)c3" CIF SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cc(ccc1Nc2nccc(n2)c3cccnc3)NC(=O)c4cccc(c4)NC(=O)[C@H]5C[C@](CCC5=O)(C)C(=O)OC" CIF SMILES "OpenEye OEToolkits" 2.0.7 "Cc1cc(ccc1Nc2nccc(n2)c3cccnc3)NC(=O)c4cccc(c4)NC(=O)C5CC(CCC5=O)(C)C(=O)OC" # _pdbx_chem_comp_identifier.comp_id CIF _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "methyl (1~{R},3~{S})-1-methyl-3-[[3-[[3-methyl-4-[(4-pyridin-3-ylpyrimidin-2-yl)amino]phenyl]carbamoyl]phenyl]carbamoyl]-4-oxidanylidene-cyclohexane-1-carboxylate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site CIF "Create component" 2023-07-17 PDBE CIF "Modify leaving atom flag" 2023-08-07 PDBE CIF "Initial release" 2024-07-24 RCSB #