data_CK9 # _chem_comp.id CK9 _chem_comp.name "2-{[(2-{[(1R)-1-(HYDROXYMETHYL)PROPYL]AMINO}-9-ISOPROPYL-9H-PURIN-6-YL)AMINO]METHYL}PHENOL" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H26 N6 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "OLOMOUCINE II" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2005-09-08 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 370.449 _chem_comp.one_letter_code ? _chem_comp.three_letter_code CK9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2A0C _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal CK9 O27 O27 O 0 1 N N N 3.474 9.847 27.989 3.762 -0.545 -2.057 O27 CK9 1 CK9 C24 C24 C 0 1 Y N N 4.132 9.728 29.194 4.424 -0.610 -0.872 C24 CK9 2 CK9 C23 C23 C 0 1 Y N N 4.259 10.823 30.099 5.719 -1.107 -0.825 C23 CK9 3 CK9 C22 C22 C 0 1 Y N N 4.942 10.645 31.343 6.389 -1.173 0.381 C22 CK9 4 CK9 C21 C21 C 0 1 Y N N 5.497 9.375 31.679 5.773 -0.738 1.540 C21 CK9 5 CK9 C20 C20 C 0 1 Y N N 5.371 8.283 30.774 4.485 -0.237 1.495 C20 CK9 6 CK9 C19 C19 C 0 1 Y N N 4.706 8.476 29.538 3.811 -0.170 0.292 C19 CK9 7 CK9 C18 C18 C 0 1 N N N 4.523 7.348 28.579 2.407 0.376 0.244 C18 CK9 8 CK9 N17 N17 N 0 1 N N N 3.528 6.487 28.697 1.452 -0.735 0.198 N17 CK9 9 CK9 C4 C4 C 0 1 Y N N 2.424 6.465 28.168 0.094 -0.478 0.149 C4 CK9 10 CK9 C5 C5 C 0 1 Y N N 1.515 5.407 28.298 -0.835 -1.532 0.105 C5 CK9 11 CK9 N9 N9 N 0 1 Y N N 1.498 4.212 28.917 -0.740 -2.884 0.095 N9 CK9 12 CK9 C8 C8 C 0 1 Y N N 0.369 3.607 28.634 -1.932 -3.402 0.046 C8 CK9 13 CK9 C6 C6 C 0 1 Y N N 0.265 5.538 27.584 -2.202 -1.213 0.056 C6 CK9 14 CK9 N7 N7 N 0 1 Y N N -0.445 4.386 27.811 -2.870 -2.411 0.020 N7 CK9 15 CK9 C10 C10 C 0 1 N N N -1.809 4.059 27.248 -4.322 -2.593 -0.035 C10 CK9 16 CK9 C12 C12 C 0 1 N N N -1.637 3.709 25.781 -4.692 -3.360 -1.307 C12 CK9 17 CK9 C11 C11 C 0 1 N N N -2.932 5.114 27.375 -4.784 -3.384 1.190 C11 CK9 18 CK9 N3 N3 N 0 1 Y N N -0.034 6.631 26.807 -2.570 0.065 0.059 N3 CK9 19 CK9 C2 C2 C 0 1 Y N N 0.855 7.655 26.710 -1.662 1.026 0.097 C2 CK9 20 CK9 N1 N1 N 0 1 Y N N 2.032 7.556 27.393 -0.361 0.771 0.143 N1 CK9 21 CK9 N13 N13 N 0 1 N N N 0.623 8.697 25.982 -2.085 2.346 0.093 N13 CK9 22 CK9 C14 C14 C 0 1 N N R -0.539 8.898 25.047 -1.101 3.430 0.139 C14 CK9 23 CK9 C25 C25 C 0 1 N N N -1.667 9.626 25.874 -1.748 4.681 0.736 C25 CK9 24 CK9 C26 C26 C 0 1 N N N -1.594 11.153 26.144 -2.125 4.414 2.195 C26 CK9 25 CK9 C15 C15 C 0 1 N N N -1.070 7.631 24.272 -0.612 3.736 -1.278 C15 CK9 26 CK9 O16 O16 O 0 1 N N N -0.206 7.036 23.299 -1.697 4.243 -2.057 O16 CK9 27 CK9 H27 H27 H 0 1 N N N 2.537 9.874 28.141 3.294 -1.385 -2.162 H27 CK9 28 CK9 H23 H23 H 0 1 N N N 3.840 11.785 29.845 6.200 -1.447 -1.730 H23 CK9 29 CK9 H22 H22 H 0 1 N N N 5.038 11.474 32.029 7.395 -1.563 0.418 H22 CK9 30 CK9 H21 H21 H 0 1 N N N 6.012 9.242 32.619 6.299 -0.789 2.482 H21 CK9 31 CK9 H20 H20 H 0 1 N N N 5.779 7.316 31.028 4.006 0.102 2.402 H20 CK9 32 CK9 H181 1H18 H 0 0 N N N 5.407 6.722 28.772 2.287 0.994 -0.646 H181 CK9 33 CK9 H182 2H18 H 0 0 N N N 4.391 7.818 27.593 2.220 0.978 1.133 H182 CK9 34 CK9 H17 H17 H 0 1 N N N 3.706 5.727 29.322 1.773 -1.650 0.201 H17 CK9 35 CK9 H8 H8 H 0 1 N N N 0.102 2.625 28.994 -2.148 -4.460 0.027 H8 CK9 36 CK9 H10 H10 H 0 1 N N N -2.167 3.233 27.881 -4.810 -1.619 -0.044 H10 CK9 37 CK9 H121 1H12 H 0 0 N N N -2.488 3.097 25.448 -5.773 -3.496 -1.348 H121 CK9 38 CK9 H122 2H12 H 0 0 N N N -0.703 3.144 25.646 -4.363 -2.797 -2.180 H122 CK9 39 CK9 H123 3H12 H 0 0 N N N -1.595 4.633 25.186 -4.204 -4.335 -1.298 H123 CK9 40 CK9 H111 1H11 H 0 0 N N N -3.866 4.707 26.959 -4.521 -2.837 2.096 H111 CK9 41 CK9 H112 2H11 H 0 0 N N N -2.647 6.021 26.821 -5.865 -3.519 1.149 H112 CK9 42 CK9 H113 3H11 H 0 0 N N N -3.082 5.365 28.436 -4.296 -4.358 1.199 H113 CK9 43 CK9 H13 H13 H 0 1 N N N 1.283 9.446 26.046 -3.032 2.551 0.059 H13 CK9 44 CK9 H14 H14 H 0 1 N N N -0.179 9.509 24.206 -0.256 3.128 0.758 H14 CK9 45 CK9 H251 1H25 H 0 0 N N N -1.565 9.188 26.878 -2.645 4.932 0.169 H251 CK9 46 CK9 H252 2H25 H 0 0 N N N -2.601 9.464 25.316 -1.045 5.512 0.689 H252 CK9 47 CK9 H261 1H26 H 0 0 N N N -2.474 11.645 25.705 -2.586 5.305 2.620 H261 CK9 48 CK9 H262 2H26 H 0 0 N N N -0.680 11.562 25.690 -2.829 3.582 2.242 H262 CK9 49 CK9 H263 3H26 H 0 0 N N N -1.577 11.334 27.229 -1.228 4.163 2.761 H263 CK9 50 CK9 H151 1H15 H 0 0 N N N -1.936 7.993 23.698 0.184 4.480 -1.235 H151 CK9 51 CK9 H152 2H15 H 0 0 N N N -1.277 6.859 25.028 -0.231 2.823 -1.736 H152 CK9 52 CK9 H16 H16 H 0 1 N N N -0.684 6.904 22.489 -1.346 4.422 -2.941 H16 CK9 53 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal CK9 O27 C24 SING N N 1 CK9 O27 H27 SING N N 2 CK9 C24 C23 DOUB Y N 3 CK9 C24 C19 SING Y N 4 CK9 C23 C22 SING Y N 5 CK9 C23 H23 SING N N 6 CK9 C22 C21 DOUB Y N 7 CK9 C22 H22 SING N N 8 CK9 C21 C20 SING Y N 9 CK9 C21 H21 SING N N 10 CK9 C20 C19 DOUB Y N 11 CK9 C20 H20 SING N N 12 CK9 C19 C18 SING N N 13 CK9 C18 N17 SING N N 14 CK9 C18 H181 SING N N 15 CK9 C18 H182 SING N N 16 CK9 N17 C4 SING N N 17 CK9 N17 H17 SING N N 18 CK9 C4 C5 SING Y N 19 CK9 C4 N1 DOUB Y N 20 CK9 C5 N9 SING Y N 21 CK9 C5 C6 DOUB Y N 22 CK9 N9 C8 DOUB Y N 23 CK9 C8 N7 SING Y N 24 CK9 C8 H8 SING N N 25 CK9 C6 N7 SING Y N 26 CK9 C6 N3 SING Y N 27 CK9 N7 C10 SING N N 28 CK9 C10 C12 SING N N 29 CK9 C10 C11 SING N N 30 CK9 C10 H10 SING N N 31 CK9 C12 H121 SING N N 32 CK9 C12 H122 SING N N 33 CK9 C12 H123 SING N N 34 CK9 C11 H111 SING N N 35 CK9 C11 H112 SING N N 36 CK9 C11 H113 SING N N 37 CK9 N3 C2 DOUB Y N 38 CK9 C2 N1 SING Y N 39 CK9 C2 N13 SING N N 40 CK9 N13 C14 SING N N 41 CK9 N13 H13 SING N N 42 CK9 C14 C25 SING N N 43 CK9 C14 C15 SING N N 44 CK9 C14 H14 SING N N 45 CK9 C25 C26 SING N N 46 CK9 C25 H251 SING N N 47 CK9 C25 H252 SING N N 48 CK9 C26 H261 SING N N 49 CK9 C26 H262 SING N N 50 CK9 C26 H263 SING N N 51 CK9 C15 O16 SING N N 52 CK9 C15 H151 SING N N 53 CK9 C15 H152 SING N N 54 CK9 O16 H16 SING N N 55 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor CK9 SMILES ACDLabs 10.04 "n1c(c2ncn(c2nc1NC(CC)CO)C(C)C)NCc3ccccc3O" CK9 SMILES_CANONICAL CACTVS 3.341 "CC[C@H](CO)Nc1nc(NCc2ccccc2O)c3ncn(C(C)C)c3n1" CK9 SMILES CACTVS 3.341 "CC[CH](CO)Nc1nc(NCc2ccccc2O)c3ncn(C(C)C)c3n1" CK9 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CC[C@H](CO)Nc1nc(c2c(n1)n(cn2)C(C)C)NCc3ccccc3O" CK9 SMILES "OpenEye OEToolkits" 1.5.0 "CCC(CO)Nc1nc(c2c(n1)n(cn2)C(C)C)NCc3ccccc3O" CK9 InChI InChI 1.03 "InChI=1S/C19H26N6O2/c1-4-14(10-26)22-19-23-17(20-9-13-7-5-6-8-15(13)27)16-18(24-19)25(11-21-16)12(2)3/h5-8,11-12,14,26-27H,4,9-10H2,1-3H3,(H2,20,22,23,24)/t14-/m1/s1" CK9 InChIKey InChI 1.03 NDUVSANREQEDRE-CQSZACIVSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier CK9 "SYSTEMATIC NAME" ACDLabs 10.04 "2-({[2-{[(1R)-1-(hydroxymethyl)propyl]amino}-9-(1-methylethyl)-9H-purin-6-yl]amino}methyl)phenol" CK9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "2-[[[2-[[(2R)-1-hydroxybutan-2-yl]amino]-9-propan-2-yl-purin-6-yl]amino]methyl]phenol" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site CK9 "Create component" 2005-09-08 RCSB CK9 "Modify descriptor" 2011-06-04 RCSB CK9 "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id CK9 _pdbx_chem_comp_synonyms.name "OLOMOUCINE II" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##