data_CM0 # _chem_comp.id CM0 _chem_comp.name ;5-(CARBOXYMETHOXY) URIDINE-5'-MONOPHOSPHATE ; _chem_comp.type "RNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C11 H15 N2 O12 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2007-03-21 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 398.217 _chem_comp.one_letter_code N _chem_comp.three_letter_code CM0 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details "OpenEye OEToolkits" _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal CM0 P P P 0 1 N N N 202.275 104.585 7.132 3.360 -0.126 -4.293 P CM0 1 CM0 "O5'" O5* O 0 1 N N N 200.942 104.116 7.830 3.063 0.476 -2.819 "O5'" CM0 2 CM0 O3P O3P O 0 1 N Y N 202.275 103.708 5.778 3.999 -1.575 -3.970 O3P CM0 3 CM0 "C3'" C3* C 0 1 N N S 199.056 102.582 9.216 1.940 -0.742 0.560 "C3'" CM0 4 CM0 N1 N1 N 0 1 N N N 197.246 103.626 6.690 0.452 2.524 0.177 N1 CM0 5 CM0 "C5'" C5* C 0 1 N N N 200.560 104.588 9.125 2.282 -0.292 -1.921 "C5'" CM0 6 CM0 O1P O1P O 0 1 N N N 202.166 106.017 6.731 4.194 0.752 -5.179 O1P CM0 7 CM0 O2P O2P O 0 1 N N N 203.398 104.119 8.016 1.890 -0.486 -4.863 O2P CM0 8 CM0 "C4'" C4* C 0 1 N N R 199.188 104.068 9.454 2.725 0.023 -0.498 "C4'" CM0 9 CM0 C2 C2 C 0 1 N N N 196.249 102.897 6.078 -0.285 3.323 1.081 C2 CM0 10 CM0 C5 C5 C 0 1 N N N 198.336 104.214 4.581 -0.547 3.573 -1.748 C5 CM0 11 CM0 "O4'" O4* O 0 1 N N N 198.226 104.666 8.553 2.470 1.422 -0.246 "O4'" CM0 12 CM0 "C2'" C2* C 0 1 N N R 197.580 102.401 8.898 0.748 0.163 0.786 "C2'" CM0 13 CM0 O2 O2 O 0 1 N N N 195.343 102.343 6.693 -0.190 3.234 2.307 O2 CM0 14 CM0 N3 N3 N 0 1 N N N 196.345 102.835 4.709 -1.155 4.247 0.489 N3 CM0 15 CM0 C4 C4 C 0 1 N N N 197.306 103.411 3.876 -1.357 4.448 -0.868 C4 CM0 16 CM0 O4 O4 O 0 1 N N N 197.181 103.176 2.686 -2.137 5.275 -1.332 O4 CM0 17 CM0 C6 C6 C 0 1 N N N 198.216 104.252 5.928 0.286 2.687 -1.194 C6 CM0 18 CM0 C7 C7 C 0 1 N N N 199.695 104.905 2.412 0.116 2.842 -3.846 C7 CM0 19 CM0 C8 C8 C 0 1 N N N 198.900 104.216 1.337 -0.090 3.072 -5.318 C8 CM0 20 CM0 O5 O5 O 0 1 N N N 199.298 104.811 3.885 -0.699 3.721 -3.107 O5 CM0 21 CM0 O8 O8 O 0 1 N N N 197.859 104.826 0.682 0.714 2.250 -6.038 O8 CM0 22 CM0 "C1'" C1* C 0 1 N N R 197.254 103.709 8.166 1.373 1.543 0.675 "C1'" CM0 23 CM0 "O2'" O2* O 0 1 N N N 196.798 102.271 10.067 0.137 -0.058 2.041 "O2'" CM0 24 CM0 O9 O9 O 0 1 N N N 199.193 103.063 1.046 -0.863 3.877 -5.814 O9 CM0 25 CM0 "O3'" O3* O 0 1 N N N 199.484 101.861 10.334 2.742 -0.809 1.739 "O3'" CM0 26 CM0 H2P H2P H 0 1 N N N 204.189 104.021 7.499 1.805 -0.809 -5.786 H2P CM0 27 CM0 H3P H3P H 0 1 N N N 202.275 104.287 5.025 4.354 -2.113 -4.710 H3P CM0 28 CM0 "H5'1" 1H5* H 0 0 N N N 201.280 104.229 9.875 1.229 -0.035 -2.051 "H5'1" CM0 29 CM0 "H5'2" 2H5* H 0 0 N N N 200.550 105.688 9.130 2.428 -1.352 -2.133 "H5'2" CM0 30 CM0 "H4'" H4* H 0 1 N N N 199.018 104.306 10.514 3.804 -0.139 -0.410 "H4'" CM0 31 CM0 "H3'" H3* H 0 1 N N N 199.686 102.201 8.399 1.675 -1.764 0.277 "H3'" CM0 32 CM0 "H1'" H1* H 0 1 N N N 196.226 103.978 8.452 1.754 1.910 1.633 "H1'" CM0 33 CM0 "H2'" H2* H 0 1 N N N 197.368 101.490 8.319 -0.000 0.004 -0.000 "H2'" CM0 34 CM0 H6 H6 H 0 1 N N N 198.954 104.831 6.464 0.894 2.032 -1.811 H6 CM0 35 CM0 H3 H3 H 0 1 N N N 195.632 102.307 4.248 -1.695 4.832 1.120 H3 CM0 36 CM0 H7C1 1H7C H 0 0 N N N 200.708 104.480 2.350 1.160 3.045 -3.590 H7C1 CM0 37 CM0 H7C2 2H7C H 0 0 N N N 199.540 105.970 2.185 -0.143 1.812 -3.586 H7C2 CM0 38 CM0 H8 H8 H 0 1 N N N 197.486 104.223 0.049 0.600 2.380 -7.003 H8 CM0 39 CM0 HA HA H 0 1 N N N 197.367 102.242 10.827 -0.481 0.678 2.194 HA CM0 40 CM0 HB HB H 0 1 N N N 199.581 100.945 10.102 3.448 -0.154 1.628 HB CM0 41 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal CM0 P "O5'" SING N N 1 CM0 P O3P SING N N 2 CM0 "O5'" "C5'" SING N N 3 CM0 P O1P DOUB N N 4 CM0 P O2P SING N N 5 CM0 "C3'" "C4'" SING N N 6 CM0 "C5'" "C4'" SING N N 7 CM0 N1 C2 SING N N 8 CM0 "C4'" "O4'" SING N N 9 CM0 "C3'" "C2'" SING N N 10 CM0 C2 O2 DOUB N N 11 CM0 C2 N3 SING N N 12 CM0 C5 C4 SING N N 13 CM0 N3 C4 SING N N 14 CM0 C4 O4 DOUB N N 15 CM0 C5 C6 DOUB N N 16 CM0 N1 C6 SING N N 17 CM0 C7 C8 SING N N 18 CM0 C5 O5 SING N N 19 CM0 C7 O5 SING N N 20 CM0 C8 O8 SING N N 21 CM0 N1 "C1'" SING N N 22 CM0 "C2'" "C1'" SING N N 23 CM0 "O4'" "C1'" SING N N 24 CM0 "C2'" "O2'" SING N N 25 CM0 C8 O9 DOUB N N 26 CM0 "C3'" "O3'" SING N N 27 CM0 O2P H2P SING N N 28 CM0 O3P H3P SING N N 29 CM0 "C5'" "H5'1" SING N N 30 CM0 "C5'" "H5'2" SING N N 31 CM0 "C4'" "H4'" SING N N 32 CM0 "C3'" "H3'" SING N N 33 CM0 "C1'" "H1'" SING N N 34 CM0 "C2'" "H2'" SING N N 35 CM0 C6 H6 SING N N 36 CM0 N3 H3 SING N N 37 CM0 C7 H7C1 SING N N 38 CM0 C7 H7C2 SING N N 39 CM0 O8 H8 SING N N 40 CM0 "O2'" HA SING N N 41 CM0 "O3'" HB SING N N 42 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor CM0 SMILES ACDLabs 10.04 "O=C(O)COC=1C(=O)NC(=O)N(C=1)C2OC(C(O)C2O)COP(=O)(O)O" CM0 SMILES_CANONICAL CACTVS 3.341 "O[C@H]1[C@@H](O)[C@@H](O[C@@H]1CO[P](O)(O)=O)N2C=C(OCC(O)=O)C(=O)NC2=O" CM0 SMILES CACTVS 3.341 "O[CH]1[CH](O)[CH](O[CH]1CO[P](O)(O)=O)N2C=C(OCC(O)=O)C(=O)NC2=O" CM0 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1=C(C(=O)NC(=O)N1[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)O)OCC(=O)O" CM0 SMILES "OpenEye OEToolkits" 1.5.0 "C1=C(C(=O)NC(=O)N1C2C(C(C(O2)COP(=O)(O)O)O)O)OCC(=O)O" CM0 InChI InChI 1.03 "InChI=1S/C11H15N2O12P/c14-6(15)3-23-4-1-13(11(19)12-9(4)18)10-8(17)7(16)5(25-10)2-24-26(20,21)22/h1,5,7-8,10,16-17H,2-3H2,(H,14,15)(H,12,18,19)(H2,20,21,22)/t5-,7-,8-,10-/m1/s1" CM0 InChIKey InChI 1.03 FRVLMVWBMGVDIG-VPCXQMTMSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier CM0 "SYSTEMATIC NAME" ACDLabs 10.04 ;5-(carboxymethoxy)uridine 5'-(dihydrogen phosphate) ; CM0 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "2-[1-[(2R,3R,4S,5R)-3,4-dihydroxy-5-(phosphonooxymethyl)oxolan-2-yl]-2,4-dioxo-pyrimidin-5-yl]oxyethanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site CM0 "Create component" 2007-03-21 RCSB CM0 "Modify descriptor" 2011-06-04 RCSB #