data_CM2 # _chem_comp.id CM2 _chem_comp.name "CARBOXYMYCOBACTIN T" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C35 H49 Fe N5 O12" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2004-08-30 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 787.635 _chem_comp.one_letter_code ? _chem_comp.three_letter_code CM2 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1X8U _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal CM2 FE FE FE 0 0 N N N 54.200 105.926 36.616 -0.759 -1.891 1.090 FE CM2 1 CM2 O2 O2 O 0 1 N N N 55.378 104.361 36.862 -0.028 -0.353 1.592 O2 CM2 2 CM2 C3 C3 C 0 1 Y N N 55.815 103.714 37.895 1.296 -0.496 1.827 C3 CM2 3 CM2 C4 C4 C 0 1 Y N N 56.998 102.902 37.696 1.876 -1.682 2.230 C4 CM2 4 CM2 C5 C5 C 0 1 Y N N 57.541 102.174 38.765 3.247 -1.756 2.401 C5 CM2 5 CM2 C6 C6 C 0 1 Y N N 56.913 102.225 40.104 4.041 -0.647 2.171 C6 CM2 6 CM2 C7 C7 C 0 1 Y N N 55.706 103.024 40.358 3.460 0.550 1.786 C7 CM2 7 CM2 C8 C8 C 0 1 Y N N 55.165 103.766 39.248 2.098 0.633 1.632 C8 CM2 8 CM2 C10 C10 C 0 1 N N S 53.994 104.586 39.339 1.406 1.905 1.245 C10 CM2 9 CM2 N11 N11 N 0 1 N N N 53.420 105.494 38.608 0.186 2.091 2.120 N11 CM2 10 CM2 C12 C12 C 0 1 N N S 52.132 106.043 39.236 -0.144 3.536 1.853 C12 CM2 11 CM2 C13 C13 C 0 1 N N N 52.040 105.225 40.547 1.179 4.144 1.352 C13 CM2 12 CM2 O14 O14 O 0 1 N N N 53.302 104.308 40.524 2.177 3.098 1.511 O14 CM2 13 CM2 C15 C15 C 0 1 N N N 52.174 107.416 39.620 -1.233 3.584 0.819 C15 CM2 14 CM2 O16 O16 O 0 1 N N N 51.228 107.840 40.391 -1.999 2.644 0.755 O16 CM2 15 CM2 N17 N17 N 0 1 N N N 53.152 108.312 39.245 -1.384 4.621 -0.020 N17 CM2 16 CM2 C18 C18 C 0 1 N N S 53.217 109.710 39.631 -2.414 4.625 -1.057 C18 CM2 17 CM2 C19 C19 C 0 1 N N N 52.019 110.479 39.324 -3.670 3.932 -0.592 C19 CM2 18 CM2 O20 O20 O 0 1 N N N 51.651 111.491 39.950 -4.094 4.110 0.525 O20 CM2 19 CM2 O21 O21 O 0 1 N N N 51.181 110.094 38.285 -4.321 3.121 -1.442 O21 CM2 20 CM2 C22 C22 C 0 1 N N N 50.457 111.107 37.445 -5.520 2.414 -1.029 C22 CM2 21 CM2 C25 C25 C 0 1 N N N 49.207 110.438 37.006 -5.428 0.955 -1.477 C25 CM2 22 CM2 C27 C27 C 0 1 N N N 49.298 109.628 35.822 -5.322 0.044 -0.284 C27 CM2 23 CM2 O28 O28 O 0 1 N N N 48.445 109.425 34.949 -5.327 0.496 0.839 O28 CM2 24 CM2 N29 N29 N 0 1 N N N 50.569 108.951 35.652 -5.221 -1.293 -0.469 N29 CM2 25 CM2 C30 C30 C 0 1 N N S 50.701 107.764 34.786 -5.216 -2.199 0.666 C30 CM2 26 CM2 C31 C31 C 0 1 N N N 51.181 108.192 33.383 -5.955 -3.509 0.341 C31 CM2 27 CM2 C32 C32 C 0 1 N N N 50.853 107.177 32.232 -5.599 -4.025 -1.034 C32 CM2 28 CM2 C33 C33 C 0 1 N N N 51.449 105.641 32.507 -4.171 -4.431 -1.299 C33 CM2 29 CM2 C34 C34 C 0 1 N N N 51.061 105.076 33.902 -3.207 -3.249 -1.165 C34 CM2 30 CM2 N35 N35 N 0 1 N N N 51.987 105.682 34.964 -2.912 -3.064 0.272 N35 CM2 31 CM2 O36 O36 O 0 1 N N N 52.987 104.889 35.387 -1.619 -3.423 0.744 O36 CM2 32 CM2 C37 C37 C 0 1 N N N 51.837 106.906 35.357 -3.807 -2.574 1.116 C37 CM2 33 CM2 O38 O38 O 0 1 N N N 52.713 107.374 36.230 -3.503 -2.412 2.285 O38 CM2 34 CM2 C39 C39 C 0 1 N N N 54.547 110.371 39.006 -1.921 3.985 -2.349 C39 CM2 35 CM2 C40 C40 C 0 1 N N N 54.599 110.412 37.452 -0.870 2.913 -2.099 C40 CM2 36 CM2 C41 C41 C 0 1 N N N 56.104 110.618 36.998 -1.523 1.557 -1.818 C41 CM2 37 CM2 C42 C42 C 0 1 N N N 56.869 109.242 36.998 -0.573 0.725 -0.952 C42 CM2 38 CM2 N43 N43 N 0 1 N N N 56.041 108.139 36.435 -0.808 -0.717 -1.196 N43 CM2 39 CM2 O44 O44 O 0 1 N N N 55.353 107.411 37.395 -1.815 -1.088 -0.158 O44 CM2 40 CM2 C45 C45 C 0 1 N N S 55.835 107.719 35.143 0.494 -1.362 -1.024 C45 CM2 41 CM2 O46 O46 O 0 1 N N N 55.051 106.720 34.908 0.591 -2.390 -0.021 O46 CM2 42 CM2 C47 C47 C 0 1 N N N 56.567 108.481 33.989 0.871 -1.968 -2.348 C47 CM2 43 CM2 C48 C48 C 0 1 N N N 56.212 108.467 32.721 1.979 -1.603 -2.944 C48 CM2 44 CM2 C49 C49 C 0 1 N N N 55.125 107.853 31.761 2.973 -0.733 -2.218 C49 CM2 45 CM2 C50 C50 C 0 1 N N N 55.095 106.164 31.980 4.358 -1.380 -2.282 C50 CM2 46 CM2 C51 C51 C 0 1 N N N 55.383 105.353 30.713 5.368 -0.497 -1.546 C51 CM2 47 CM2 C52 C52 C 0 1 N N N 55.249 104.098 30.498 6.753 -1.143 -1.610 C52 CM2 48 CM2 C53 C53 C 0 1 N N N 54.810 102.819 31.085 7.763 -0.260 -0.874 C53 CM2 49 CM2 C54 C54 C 0 1 N N N 54.022 101.820 31.967 9.148 -0.907 -0.938 C54 CM2 50 CM2 C55 C55 C 0 1 N N N 52.641 101.182 32.064 10.142 -0.037 -0.213 C55 CM2 51 CM2 O56 O56 O 0 1 N N N 51.984 101.216 33.072 9.780 0.994 0.303 O56 CM2 52 CM2 O57 O57 O 0 1 N N N 52.230 100.627 30.981 11.430 -0.408 -0.139 O57 CM2 53 CM2 H4 H4 H 0 1 N N N 57.494 102.837 36.713 1.268 -2.554 2.421 H4 CM2 54 CM2 H5 H5 H 0 1 N N N 58.443 101.574 38.557 3.698 -2.685 2.719 H5 CM2 55 CM2 H6 H6 H 0 1 N N N 57.357 101.652 40.935 5.112 -0.710 2.295 H6 CM2 56 CM2 H7 H7 H 0 1 N N N 55.222 103.065 41.349 4.085 1.414 1.608 H7 CM2 57 CM2 H10 H10 H 0 1 N N N 54.502 104.895 38.396 1.111 1.884 0.199 H10 CM2 58 CM2 H11 H11 H 0 1 N N N 53.246 105.146 37.665 0.609 2.138 3.070 H11 CM2 59 CM2 H12 H12 H 0 1 N N N 51.294 105.964 38.504 -0.462 4.010 2.779 H12 CM2 60 CM2 H131 1H13 H 0 0 N N N 51.079 104.674 40.673 1.102 4.419 0.301 H131 CM2 61 CM2 H132 2H13 H 0 0 N N N 51.947 105.848 41.467 1.454 5.010 1.952 H132 CM2 62 CM2 H17 H17 H 0 1 N N N 53.874 107.915 38.643 -0.790 5.392 0.069 H17 CM2 63 CM2 H18 H18 H 0 1 N N N 53.271 109.742 40.744 -2.675 5.675 -1.271 H18 CM2 64 CM2 H221 1H22 H 0 0 N N N 51.068 111.511 36.604 -5.630 2.469 0.050 H221 CM2 65 CM2 H222 2H22 H 0 0 N N N 50.287 112.080 37.963 -6.388 2.878 -1.504 H222 CM2 66 CM2 H251 1H25 H 0 0 N N N 48.399 111.196 36.882 -6.317 0.697 -2.054 H251 CM2 67 CM2 H252 2H25 H 0 0 N N N 48.790 109.833 37.845 -4.545 0.828 -2.108 H252 CM2 68 CM2 H29 H29 H 0 1 N N N 51.382 109.315 36.149 -5.180 -1.628 -1.379 H29 CM2 69 CM2 H30 H30 H 0 1 N N N 49.722 107.232 34.735 -5.729 -1.723 1.511 H30 CM2 70 CM2 H311 1H31 H 0 0 N N N 52.274 108.414 33.401 -5.681 -4.258 1.083 H311 CM2 71 CM2 H312 2H31 H 0 0 N N N 50.782 109.202 33.131 -7.028 -3.329 0.393 H312 CM2 72 CM2 H321 1H32 H 0 0 N N N 51.207 107.567 31.249 -6.232 -4.899 -1.226 H321 CM2 73 CM2 H322 2H32 H 0 0 N N N 49.756 107.145 32.035 -5.886 -3.271 -1.770 H322 CM2 74 CM2 H331 1H33 H 0 0 N N N 52.554 105.612 32.360 -3.881 -5.203 -0.586 H331 CM2 75 CM2 H332 2H33 H 0 0 N N N 51.138 104.943 31.695 -4.092 -4.836 -2.309 H332 CM2 76 CM2 H341 1H34 H 0 0 N N N 51.064 103.961 33.924 -2.277 -3.487 -1.688 H341 CM2 77 CM2 H342 2H34 H 0 0 N N N 49.983 105.235 34.139 -3.637 -2.349 -1.584 H342 CM2 78 CM2 H391 1H39 H 0 0 N N N 55.454 109.861 39.407 -1.488 4.763 -2.984 H391 CM2 79 CM2 H392 2H39 H 0 0 N N N 54.699 111.394 39.422 -2.765 3.541 -2.879 H392 CM2 80 CM2 H401 1H40 H 0 0 N N N 53.915 111.181 37.023 -0.241 3.194 -1.258 H401 CM2 81 CM2 H402 2H40 H 0 0 N N N 54.132 109.513 36.986 -0.239 2.821 -2.989 H402 CM2 82 CM2 H411 1H41 H 0 0 N N N 56.625 111.383 37.620 -1.710 1.037 -2.758 H411 CM2 83 CM2 H412 2H41 H 0 0 N N N 56.174 111.132 36.011 -2.462 1.700 -1.288 H412 CM2 84 CM2 H421 1H42 H 0 0 N N N 57.241 108.987 38.018 -0.760 0.940 0.094 H421 CM2 85 CM2 H422 2H42 H 0 0 N N N 57.847 109.324 36.468 0.452 0.967 -1.221 H422 CM2 86 CM2 H45 H45 H 0 1 N N N 55.440 107.013 34.376 1.217 -0.591 -0.787 H45 CM2 87 CM2 H47 H47 H 0 1 N N N 57.462 109.120 34.083 0.228 -2.704 -2.807 H47 CM2 88 CM2 H48 H48 H 0 1 N N N 57.023 109.132 32.380 2.180 -1.925 -3.955 H48 CM2 89 CM2 H491 1H49 H 0 0 N N N 55.284 108.142 30.696 2.670 -0.626 -1.177 H491 CM2 90 CM2 H492 2H49 H 0 0 N N N 54.122 108.319 31.899 3.009 0.249 -2.690 H492 CM2 91 CM2 H501 1H50 H 0 0 N N N 54.125 105.848 32.430 4.661 -1.487 -3.324 H501 CM2 92 CM2 H502 2H50 H 0 0 N N N 55.792 105.867 32.798 4.323 -2.362 -1.811 H502 CM2 93 CM2 H511 1H51 H 0 0 N N N 56.443 105.582 30.455 5.065 -0.389 -0.505 H511 CM2 94 CM2 H512 2H51 H 0 0 N N N 54.795 105.852 29.907 5.403 0.485 -2.017 H512 CM2 95 CM2 H521 1H52 H 0 0 N N N 56.288 103.834 30.190 7.056 -1.251 -2.652 H521 CM2 96 CM2 H522 2H52 H 0 0 N N N 54.632 104.117 29.569 6.718 -2.126 -1.139 H522 CM2 97 CM2 H531 1H53 H 0 0 N N N 55.822 102.494 31.421 7.460 -0.153 0.168 H531 CM2 98 CM2 H532 2H53 H 0 0 N N N 54.580 102.321 30.114 7.798 0.722 -1.345 H532 CM2 99 CM2 H541 1H54 H 0 0 N N N 54.138 102.270 32.981 9.451 -1.015 -1.979 H541 CM2 100 CM2 H542 2H54 H 0 0 N N N 54.687 100.925 31.948 9.112 -1.889 -0.467 H542 CM2 101 CM2 H57 H57 H 0 1 N N N 51.369 100.229 31.042 12.068 0.150 0.326 H57 CM2 102 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal CM2 FE O2 SING N N 1 CM2 FE O36 SING N N 2 CM2 FE O44 SING N N 3 CM2 FE O46 SING N N 4 CM2 O2 C3 SING N N 5 CM2 C3 C4 DOUB Y N 6 CM2 C3 C8 SING Y N 7 CM2 C4 C5 SING Y N 8 CM2 C4 H4 SING N N 9 CM2 C5 C6 DOUB Y N 10 CM2 C5 H5 SING N N 11 CM2 C6 C7 SING Y N 12 CM2 C6 H6 SING N N 13 CM2 C7 C8 DOUB Y N 14 CM2 C7 H7 SING N N 15 CM2 C8 C10 SING N N 16 CM2 C10 N11 SING N N 17 CM2 C10 O14 SING N N 18 CM2 C10 H10 SING N N 19 CM2 N11 C12 SING N N 20 CM2 N11 H11 SING N N 21 CM2 C12 C13 SING N N 22 CM2 C12 C15 SING N N 23 CM2 C12 H12 SING N N 24 CM2 C13 O14 SING N N 25 CM2 C13 H131 SING N N 26 CM2 C13 H132 SING N N 27 CM2 C15 O16 DOUB N N 28 CM2 C15 N17 SING N N 29 CM2 N17 C18 SING N N 30 CM2 N17 H17 SING N N 31 CM2 C18 C19 SING N N 32 CM2 C18 C39 SING N N 33 CM2 C18 H18 SING N N 34 CM2 C19 O20 DOUB N N 35 CM2 C19 O21 SING N N 36 CM2 O21 C22 SING N N 37 CM2 C22 C25 SING N N 38 CM2 C22 H221 SING N N 39 CM2 C22 H222 SING N N 40 CM2 C25 C27 SING N N 41 CM2 C25 H251 SING N N 42 CM2 C25 H252 SING N N 43 CM2 C27 O28 DOUB N N 44 CM2 C27 N29 SING N N 45 CM2 N29 C30 SING N N 46 CM2 N29 H29 SING N N 47 CM2 C30 C31 SING N N 48 CM2 C30 C37 SING N N 49 CM2 C30 H30 SING N N 50 CM2 C31 C32 SING N N 51 CM2 C31 H311 SING N N 52 CM2 C31 H312 SING N N 53 CM2 C32 C33 SING N N 54 CM2 C32 H321 SING N N 55 CM2 C32 H322 SING N N 56 CM2 C33 C34 SING N N 57 CM2 C33 H331 SING N N 58 CM2 C33 H332 SING N N 59 CM2 C34 N35 SING N N 60 CM2 C34 H341 SING N N 61 CM2 C34 H342 SING N N 62 CM2 N35 O36 SING N N 63 CM2 N35 C37 SING N N 64 CM2 C37 O38 DOUB N N 65 CM2 C39 C40 SING N N 66 CM2 C39 H391 SING N N 67 CM2 C39 H392 SING N N 68 CM2 C40 C41 SING N N 69 CM2 C40 H401 SING N N 70 CM2 C40 H402 SING N N 71 CM2 C41 C42 SING N N 72 CM2 C41 H411 SING N N 73 CM2 C41 H412 SING N N 74 CM2 C42 N43 SING N N 75 CM2 C42 H421 SING N N 76 CM2 C42 H422 SING N N 77 CM2 N43 O44 SING N N 78 CM2 N43 C45 SING N N 79 CM2 C45 O46 SING N N 80 CM2 C45 C47 SING N N 81 CM2 C45 H45 SING N N 82 CM2 C47 C48 DOUB N Z 83 CM2 C47 H47 SING N N 84 CM2 C48 C49 SING N N 85 CM2 C48 H48 SING N N 86 CM2 C49 C50 SING N N 87 CM2 C49 H491 SING N N 88 CM2 C49 H492 SING N N 89 CM2 C50 C51 SING N N 90 CM2 C50 H501 SING N N 91 CM2 C50 H502 SING N N 92 CM2 C51 C52 SING N N 93 CM2 C51 H511 SING N N 94 CM2 C51 H512 SING N N 95 CM2 C52 C53 SING N N 96 CM2 C52 H521 SING N N 97 CM2 C52 H522 SING N N 98 CM2 C53 C54 SING N N 99 CM2 C53 H531 SING N N 100 CM2 C53 H532 SING N N 101 CM2 C54 C55 SING N N 102 CM2 C54 H541 SING N N 103 CM2 C54 H542 SING N N 104 CM2 C55 O56 DOUB N N 105 CM2 C55 O57 SING N N 106 CM2 O57 H57 SING N N 107 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor CM2 SMILES ACDLabs 10.04 "O=C2N3O[Fe]54Oc1ccccc1C6OCC(C(=O)NC(C(=O)OCCC(=O)NC2CCCC3)CCCCN(O4)C(O5)\C=C/CCCCCCC(=O)O)N6" CM2 SMILES_CANONICAL CACTVS 3.341 "OC(=O)CCCCCC\C=C/[C@@H]1O[Fe@]23ON1CCCC[C@H](NC(=O)[C@@H]4CO[C@H](N4)c5ccccc5O2)C(=O)OCCC(=O)N[C@H]6CCCCN(O3)C6=O" CM2 SMILES CACTVS 3.341 "OC(=O)CCCCCCC=C[CH]1O[Fe]23ON1CCCC[CH](NC(=O)[CH]4CO[CH](N4)c5ccccc5O2)C(=O)OCCC(=O)N[CH]6CCCCN(O3)C6=O" CM2 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1ccc2c(c1)C3N[C@@H](CO3)C(=O)N[C@H]4CCCCN5C(O[Fe@](O2)(O5)ON6CCCC[C@@H](C6=O)NC(=O)CCOC4=O)\C=C/CCCCCCC(=O)O" CM2 SMILES "OpenEye OEToolkits" 1.5.0 "c1ccc2c(c1)C3NC(CO3)C(=O)NC4CCCCN5C(O[Fe](O2)(O5)ON6CCCCC(C6=O)NC(=O)CCOC4=O)C=CCCCCCCC(=O)O" CM2 InChI InChI 1.03 ;InChI=1S/C35H50N5O12.Fe/c41-28-16-8-7-13-24(28)33-38-27(23-52-33)32(46)37-26(35(48)51-22-19-29(42)36-25-14-9-12-21-40(50)34(25)47)15-10-11-20-39(49)30(43)17-5-3-1-2-4-6-18-31(44)45;/h5,7-8,13,16-17,25-27,30,33,38,41H,1-4,6,9-12,14-15,18-23H2,(H,36,42)(H,37,46)(H,44,45);/q-3;+4/p-1/b17-5-;/t25-,26-,27-,30-,33?;/m0./s1 ; CM2 InChIKey InChI 1.03 GJJULHJRORAZCG-SRTBGGRNSA-M # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier CM2 "SYSTEMATIC NAME" ACDLabs 10.04 "[(8Z,10S)-10-(hydroxy-kappaO)-10-[(hydroxy-kappaO){(5S)-6-(3-{[(3S)-1-(hydroxy-kappaO)-2-oxoazepan-3-yl]amino}-3-oxopropoxy)-5-[({(2S,4S)-2-[2-(hydroxy-kappaO)phenyl]-1,3-oxazolidin-4-yl}carbonyl)amino]-6-oxohexyl}amino]dec-8-enoato(4-)]iron" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site CM2 "Create component" 2004-08-30 RCSB CM2 "Modify descriptor" 2011-06-04 RCSB #