data_CM5 # _chem_comp.id CM5 _chem_comp.name 5-CYCLOHEXYL-1-PENTYL-BETA-D-MALTOSIDE _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H42 O11" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "5-CYCLOHEXYLPENTYL 4-O-ALPHA-D-GLUCOPYRANOSYL-BETA-D-GLUCOPYRANOSIDE; CYMAL-5" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2005-10-27 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 494.573 _chem_comp.one_letter_code ? _chem_comp.three_letter_code CM5 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2BDM _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal CM5 C7 C7 C 0 1 N N N 95.194 36.050 15.024 9.533 0.953 -1.391 C7 CM5 1 CM5 C8 C8 C 0 1 N N N 95.165 35.396 16.408 10.966 0.759 -0.891 C8 CM5 2 CM5 C9 C9 C 0 1 N N N 96.584 35.215 16.953 11.086 1.301 0.535 C9 CM5 3 CM5 C10 C10 C 0 1 N N N 97.319 36.557 16.994 10.120 0.547 1.450 C10 CM5 4 CM5 C11 C11 C 0 1 N N N 97.346 37.199 15.604 8.687 0.741 0.950 C11 CM5 5 CM5 C6 C6 C 0 1 N N N 95.922 37.395 15.074 8.567 0.199 -0.476 C6 CM5 6 CM5 C5 C5 C 0 1 N N N 95.953 38.042 13.688 7.134 0.393 -0.976 C5 CM5 7 CM5 C4 C4 C 0 1 N N N 94.551 38.520 13.302 6.180 -0.460 -0.137 C4 CM5 8 CM5 C3 C3 C 0 1 N N N 94.469 39.110 11.893 4.748 -0.265 -0.637 C3 CM5 9 CM5 C2 C2 C 0 1 N N N 95.357 40.341 11.698 3.794 -1.118 0.202 C2 CM5 10 CM5 C1 C1 C 0 1 N N N 94.758 41.235 10.610 2.362 -0.924 -0.299 C1 CM5 11 CM5 O12 O12 O 0 1 N N N 93.541 41.770 11.152 1.471 -1.721 0.485 O12 CM5 12 CM5 C13 C13 C 0 1 N N R 92.651 42.279 10.148 0.156 -1.497 -0.028 C13 CM5 13 CM5 C18 C18 C 0 1 N N R 91.363 42.723 10.848 -0.833 -2.418 0.689 C18 CM5 14 CM5 O22 O22 O 0 1 N N N 90.728 41.578 11.423 -0.448 -3.781 0.494 O22 CM5 15 CM5 C17 C17 C 0 1 N N R 90.406 43.380 9.851 -2.234 -2.194 0.109 C17 CM5 16 CM5 O21 O21 O 0 1 N N N 89.314 43.964 10.564 -3.194 -2.934 0.866 O21 CM5 17 CM5 O14 O14 O 0 1 N N N 93.234 43.381 9.431 -0.209 -0.135 0.186 O14 CM5 18 CM5 C15 C15 C 0 1 N N R 92.353 43.867 8.404 -1.443 0.095 -0.493 C15 CM5 19 CM5 C19 C19 C 0 1 N N N 93.072 44.890 7.520 -1.777 1.587 -0.450 C19 CM5 20 CM5 O20 O20 O 0 1 N N N 93.504 46.000 8.312 -0.776 2.320 -1.159 O20 CM5 21 CM5 C16 C16 C 0 1 N N S 91.113 44.474 9.046 -2.563 -0.699 0.184 C16 CM5 22 CM5 O23 O23 O 0 1 N N N 90.209 44.992 8.058 -3.800 -0.446 -0.485 O23 CM5 23 CM5 C24 C24 C 0 1 N N R 89.449 46.089 8.590 -4.840 -0.687 0.464 C24 CM5 24 CM5 O25 O25 O 0 1 N N N 90.123 47.323 8.293 -4.893 0.394 1.394 O25 CM5 25 CM5 C26 C26 C 0 1 N N R 90.354 47.527 6.887 -4.981 1.604 0.644 C26 CM5 26 CM5 C30 C30 C 0 1 N N N 91.042 48.887 6.745 -4.847 2.799 1.590 C30 CM5 27 CM5 O31 O31 O 0 1 N N N 91.317 49.163 5.369 -3.541 2.804 2.170 O31 CM5 28 CM5 C27 C27 C 0 1 N N S 89.031 47.538 6.115 -6.331 1.671 -0.073 C27 CM5 29 CM5 O32 O32 O 0 1 N N N 89.293 47.557 4.709 -6.426 2.898 -0.800 O32 CM5 30 CM5 C28 C28 C 0 1 N N S 88.208 46.287 6.432 -6.440 0.490 -1.044 C28 CM5 31 CM5 O33 O33 O 0 1 N N N 86.916 46.408 5.831 -7.751 0.452 -1.612 O33 CM5 32 CM5 C29 C29 C 0 1 N N R 88.061 46.125 7.946 -6.178 -0.806 -0.269 C29 CM5 33 CM5 O34 O34 O 0 1 N N N 87.349 44.922 8.244 -6.129 -1.908 -1.178 O34 CM5 34 CM5 H71 1H7 H 0 1 N N N 94.170 36.151 14.594 9.448 0.567 -2.407 H71 CM5 35 CM5 H72 2H7 H 0 1 N N N 95.633 35.371 14.256 9.287 2.015 -1.384 H72 CM5 36 CM5 H81 1H8 H 0 1 N N N 94.601 34.434 16.398 11.212 -0.303 -0.898 H81 CM5 37 CM5 H82 2H8 H 0 1 N N N 94.519 35.963 17.119 11.655 1.296 -1.543 H82 CM5 38 CM5 H91 1H9 H 0 1 N N N 97.154 34.448 16.378 12.107 1.162 0.891 H91 CM5 39 CM5 H92 2H9 H 0 1 N N N 96.585 34.712 17.948 10.840 2.362 0.542 H92 CM5 40 CM5 H101 1H10 H 0 0 N N N 98.343 36.455 17.423 10.366 -0.515 1.443 H101 CM5 41 CM5 H102 2H10 H 0 0 N N N 96.886 37.243 17.759 10.205 0.933 2.466 H102 CM5 42 CM5 H111 1H11 H 0 0 N N N 97.977 36.618 14.892 8.441 1.803 0.957 H111 CM5 43 CM5 H112 2H11 H 0 0 N N N 97.925 38.152 15.599 7.998 0.204 1.602 H112 CM5 44 CM5 H6 H6 H 0 1 N N N 95.370 38.075 15.764 8.813 -0.863 -0.483 H6 CM5 45 CM5 H51 1H5 H 0 1 N N N 96.389 37.362 12.919 7.070 0.089 -2.021 H51 CM5 46 CM5 H52 2H5 H 0 1 N N N 96.706 38.862 13.626 6.857 1.444 -0.886 H52 CM5 47 CM5 H41 1H4 H 0 1 N N N 94.161 39.244 14.055 6.245 -0.156 0.908 H41 CM5 48 CM5 H42 2H4 H 0 1 N N N 93.807 37.700 13.429 6.458 -1.510 -0.228 H42 CM5 49 CM5 H31A 1H3 H 0 0 N N N 93.412 39.337 11.620 4.683 -0.569 -1.682 H31A CM5 50 CM5 H32A 2H3 H 0 0 N N N 94.695 38.334 11.125 4.471 0.785 -0.547 H32A CM5 51 CM5 H21A 1H2 H 0 0 N N N 96.416 40.067 11.482 3.859 -0.814 1.246 H21A CM5 52 CM5 H22A 2H2 H 0 0 N N N 95.527 40.894 12.652 4.071 -2.169 0.111 H22A CM5 53 CM5 H11 1H1 H 0 1 N N N 94.616 40.712 9.636 2.297 -1.228 -1.343 H11 CM5 54 CM5 H12 2H1 H 0 1 N N N 95.462 42.019 10.244 2.084 0.126 -0.208 H12 CM5 55 CM5 H13 H13 H 0 1 N N N 92.441 41.481 9.399 0.143 -1.712 -1.097 H13 CM5 56 CM5 H18 H18 H 0 1 N N N 91.619 43.465 11.640 -0.839 -2.189 1.754 H18 CM5 57 CM5 H22 H22 H 0 1 N N N 89.929 41.853 11.857 0.437 -3.878 0.872 H22 CM5 58 CM5 H17 H17 H 0 1 N N N 90.042 42.597 9.146 -2.257 -2.521 -0.931 H17 CM5 59 CM5 H21 H21 H 0 1 N N N 88.720 44.372 9.945 -2.950 -3.867 0.791 H21 CM5 60 CM5 H15 H15 H 0 1 N N N 92.041 43.018 7.753 -1.350 -0.226 -1.530 H15 CM5 61 CM5 H191 1H19 H 0 0 N N N 92.444 45.211 6.656 -2.748 1.756 -0.914 H191 CM5 62 CM5 H192 2H19 H 0 0 N N N 93.912 44.432 6.948 -1.807 1.923 0.587 H192 CM5 63 CM5 H20 H20 H 0 1 N N N 93.950 46.635 7.764 -1.024 3.253 -1.108 H20 CM5 64 CM5 H16 H16 H 0 1 N N N 91.424 45.320 9.703 -2.645 -0.395 1.228 H16 CM5 65 CM5 H24 H24 H 0 1 N N N 89.348 45.958 9.693 -4.635 -1.614 0.999 H24 CM5 66 CM5 H26 H26 H 0 1 N N N 90.981 46.704 6.472 -4.178 1.633 -0.093 H26 CM5 67 CM5 H301 1H30 H 0 0 N N N 91.960 48.957 7.375 -5.595 2.724 2.379 H301 CM5 68 CM5 H302 2H30 H 0 0 N N N 90.452 49.703 7.223 -5.000 3.723 1.032 H302 CM5 69 CM5 H31 H31 H 0 1 N N N 91.744 50.007 5.281 -3.499 3.571 2.757 H31 CM5 70 CM5 H27 H27 H 0 1 N N N 88.461 48.447 6.420 -7.137 1.618 0.659 H27 CM5 71 CM5 H32 H32 H 0 1 N N N 88.473 47.564 4.230 -7.286 2.895 -1.242 H32 CM5 72 CM5 H28 H28 H 0 1 N N N 88.729 45.390 6.024 -5.701 0.597 -1.837 H28 CM5 73 CM5 H33 H33 H 0 1 N N N 86.405 45.632 6.028 -7.777 -0.312 -2.204 H33 CM5 74 CM5 H29 H29 H 0 1 N N N 87.487 46.989 8.356 -6.977 -0.966 0.455 H29 CM5 75 CM5 H34 H34 H 0 1 N N N 86.488 44.944 7.844 -5.956 -2.699 -0.649 H34 CM5 76 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal CM5 C7 C8 SING N N 1 CM5 C7 C6 SING N N 2 CM5 C7 H71 SING N N 3 CM5 C7 H72 SING N N 4 CM5 C8 C9 SING N N 5 CM5 C8 H81 SING N N 6 CM5 C8 H82 SING N N 7 CM5 C9 C10 SING N N 8 CM5 C9 H91 SING N N 9 CM5 C9 H92 SING N N 10 CM5 C10 C11 SING N N 11 CM5 C10 H101 SING N N 12 CM5 C10 H102 SING N N 13 CM5 C11 C6 SING N N 14 CM5 C11 H111 SING N N 15 CM5 C11 H112 SING N N 16 CM5 C6 C5 SING N N 17 CM5 C6 H6 SING N N 18 CM5 C5 C4 SING N N 19 CM5 C5 H51 SING N N 20 CM5 C5 H52 SING N N 21 CM5 C4 C3 SING N N 22 CM5 C4 H41 SING N N 23 CM5 C4 H42 SING N N 24 CM5 C3 C2 SING N N 25 CM5 C3 H31A SING N N 26 CM5 C3 H32A SING N N 27 CM5 C2 C1 SING N N 28 CM5 C2 H21A SING N N 29 CM5 C2 H22A SING N N 30 CM5 C1 O12 SING N N 31 CM5 C1 H11 SING N N 32 CM5 C1 H12 SING N N 33 CM5 O12 C13 SING N N 34 CM5 C13 C18 SING N N 35 CM5 C13 O14 SING N N 36 CM5 C13 H13 SING N N 37 CM5 C18 O22 SING N N 38 CM5 C18 C17 SING N N 39 CM5 C18 H18 SING N N 40 CM5 O22 H22 SING N N 41 CM5 C17 O21 SING N N 42 CM5 C17 C16 SING N N 43 CM5 C17 H17 SING N N 44 CM5 O21 H21 SING N N 45 CM5 O14 C15 SING N N 46 CM5 C15 C19 SING N N 47 CM5 C15 C16 SING N N 48 CM5 C15 H15 SING N N 49 CM5 C19 O20 SING N N 50 CM5 C19 H191 SING N N 51 CM5 C19 H192 SING N N 52 CM5 O20 H20 SING N N 53 CM5 C16 O23 SING N N 54 CM5 C16 H16 SING N N 55 CM5 O23 C24 SING N N 56 CM5 C24 O25 SING N N 57 CM5 C24 C29 SING N N 58 CM5 C24 H24 SING N N 59 CM5 O25 C26 SING N N 60 CM5 C26 C30 SING N N 61 CM5 C26 C27 SING N N 62 CM5 C26 H26 SING N N 63 CM5 C30 O31 SING N N 64 CM5 C30 H301 SING N N 65 CM5 C30 H302 SING N N 66 CM5 O31 H31 SING N N 67 CM5 C27 O32 SING N N 68 CM5 C27 C28 SING N N 69 CM5 C27 H27 SING N N 70 CM5 O32 H32 SING N N 71 CM5 C28 O33 SING N N 72 CM5 C28 C29 SING N N 73 CM5 C28 H28 SING N N 74 CM5 O33 H33 SING N N 75 CM5 C29 O34 SING N N 76 CM5 C29 H29 SING N N 77 CM5 O34 H34 SING N N 78 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor CM5 SMILES ACDLabs 10.04 "O(CCCCCC1CCCCC1)C3OC(C(OC2OC(CO)C(O)C(O)C2O)C(O)C3O)CO" CM5 SMILES_CANONICAL CACTVS 3.341 "OC[C@H]1O[C@H](O[C@H]2[C@H](O)[C@@H](O)[C@H](OCCCCCC3CCCCC3)O[C@@H]2CO)[C@H](O)[C@@H](O)[C@@H]1O" CM5 SMILES CACTVS 3.341 "OC[CH]1O[CH](O[CH]2[CH](O)[CH](O)[CH](OCCCCCC3CCCCC3)O[CH]2CO)[CH](O)[CH](O)[CH]1O" CM5 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1CCC(CC1)CCCCCO[C@H]2[C@@H]([C@H]([C@@H]([C@H](O2)CO)O[C@@H]3[C@@H]([C@H]([C@@H]([C@H](O3)CO)O)O)O)O)O" CM5 SMILES "OpenEye OEToolkits" 1.5.0 "C1CCC(CC1)CCCCCOC2C(C(C(C(O2)CO)OC3C(C(C(C(O3)CO)O)O)O)O)O" CM5 InChI InChI 1.03 "InChI=1S/C23H42O11/c24-11-14-16(26)17(27)19(29)23(32-14)34-21-15(12-25)33-22(20(30)18(21)28)31-10-6-2-5-9-13-7-3-1-4-8-13/h13-30H,1-12H2/t14-,15-,16-,17+,18-,19-,20-,21-,22-,23-/m1/s1" CM5 InChIKey InChI 1.03 RVTGFZGNOSKUDA-ZNGNCRBCSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier CM5 "SYSTEMATIC NAME" ACDLabs 10.04 "5-cyclohexylpentyl 4-O-alpha-D-glucopyranosyl-beta-D-glucopyranoside" CM5 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2R,3R,4S,5S,6R)-2-[(2R,3S,4R,5R,6R)-6-(5-cyclohexylpentoxy)-4,5-dihydroxy-2-(hydroxymethyl)oxan-3-yl]oxy-6-(hydroxymethyl)oxane-3,4,5-triol" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site CM5 "Create component" 2005-10-27 RCSB CM5 "Modify descriptor" 2011-06-04 RCSB CM5 "Modify synonyms" 2020-06-05 PDBE # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 CM5 "5-CYCLOHEXYLPENTYL 4-O-ALPHA-D-GLUCOPYRANOSYL-BETA-D-GLUCOPYRANOSIDE" ? ? 2 CM5 CYMAL-5 ? ? ##