data_CMP # _chem_comp.id CMP _chem_comp.name "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H12 N5 O6 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "CYCLIC AMP; CAMP" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2020-05-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 329.206 _chem_comp.one_letter_code ? _chem_comp.three_letter_code CMP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1RUN _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal CMP P P P 0 1 N N R 23.331 65.840 7.282 0.035 0.457 -4.129 P CMP 1 CMP O1P O1P O 0 1 N N N 24.410 65.875 8.285 1.127 1.448 -4.010 O1P CMP 2 CMP O2P O2P O 0 1 N N N 22.096 66.642 7.482 -0.773 0.723 -5.496 O2P CMP 3 CMP "O5'" O5* O 0 1 N N N 24.063 66.219 5.913 0.664 -1.020 -4.167 "O5'" CMP 4 CMP "C5'" C5* C 0 1 N N N 23.590 65.766 4.634 1.291 -1.282 -2.903 "C5'" CMP 5 CMP "C4'" C4* C 0 1 N N R 22.867 64.454 4.776 0.229 -1.157 -1.826 "C4'" CMP 6 CMP "O4'" O4* O 0 1 N N N 23.145 63.564 3.660 0.656 -1.453 -0.497 "O4'" CMP 7 CMP "C3'" C3* C 0 1 N N S 23.378 63.641 5.941 -0.193 0.332 -1.731 "C3'" CMP 8 CMP "O3'" O3* O 0 1 N N N 22.893 64.317 7.078 -0.970 0.624 -2.876 "O3'" CMP 9 CMP "C2'" C2* C 0 1 N N R 22.798 62.275 5.618 -0.954 0.340 -0.394 "C2'" CMP 10 CMP "O2'" O2* O 0 1 N N N 21.396 62.250 5.837 -2.353 0.144 -0.610 "O2'" CMP 11 CMP "C1'" C1* C 0 1 N N R 23.073 62.218 4.113 -0.331 -0.851 0.372 "C1'" CMP 12 CMP N9 N9 N 0 1 Y N N 24.303 61.528 3.719 0.309 -0.374 1.600 N9 CMP 13 CMP C8 C8 C 0 1 Y N N 25.623 61.948 3.754 1.602 0.035 1.728 C8 CMP 14 CMP N7 N7 N 0 1 Y N N 26.473 61.067 3.259 1.836 0.393 2.958 N7 CMP 15 CMP C5 C5 C 0 1 Y N N 25.660 59.993 2.899 0.708 0.241 3.693 C5 CMP 16 CMP C6 C6 C 0 1 Y N N 25.939 58.758 2.334 0.372 0.452 5.041 C6 CMP 17 CMP N6 N6 N 0 1 N N N 27.173 58.368 2.015 1.309 0.938 5.937 N6 CMP 18 CMP N1 N1 N 0 1 Y N N 24.912 57.922 2.097 -0.867 0.180 5.434 N1 CMP 19 CMP C2 C2 C 0 1 Y N N 23.693 58.298 2.413 -1.767 -0.282 4.587 C2 CMP 20 CMP N3 N3 N 0 1 Y N N 23.282 59.438 2.960 -1.496 -0.501 3.317 N3 CMP 21 CMP C4 C4 C 0 1 Y N N 24.329 60.259 3.182 -0.282 -0.258 2.833 C4 CMP 22 CMP HOP2 2HOP H 0 0 N N N 21.400 66.619 6.835 -0.136 0.638 -6.218 HOP2 CMP 23 CMP "H5'1" 1H5* H 0 0 N N N 22.959 66.534 4.128 2.083 -0.554 -2.726 "H5'1" CMP 24 CMP "H5'2" 2H5* H 0 0 N N N 24.413 65.707 3.884 1.706 -2.290 -2.899 "H5'2" CMP 25 CMP "H4'" H4* H 0 1 N N N 21.796 64.749 4.871 -0.632 -1.772 -2.084 "H4'" CMP 26 CMP "H3'" H3* H 0 1 N N N 24.471 63.518 6.123 0.687 0.973 -1.690 "H3'" CMP 27 CMP "H2'" H2* H 0 1 N N N 23.219 61.440 6.226 -0.776 1.272 0.143 "H2'" CMP 28 CMP "HO2'" *HO2 H 0 0 N N N 21.033 61.395 5.635 -2.775 0.159 0.259 "HO2'" CMP 29 CMP "H1'" H1* H 0 1 N N N 22.248 61.623 3.654 -1.104 -1.580 0.616 "H1'" CMP 30 CMP H8 H8 H 0 1 N N N 25.973 62.916 4.148 2.327 0.059 0.928 H8 CMP 31 CMP HN61 1HN6 H 0 0 N N N 27.378 57.459 1.599 1.063 1.083 6.864 HN61 CMP 32 CMP HN62 2HN6 H 0 0 N N N 27.747 58.456 2.853 2.212 1.129 5.639 HN62 CMP 33 CMP H2 H2 H 0 1 N N N 22.908 57.556 2.188 -2.763 -0.490 4.948 H2 CMP 34 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal CMP P O1P DOUB N N 1 CMP P O2P SING N N 2 CMP P "O5'" SING N N 3 CMP P "O3'" SING N N 4 CMP O2P HOP2 SING N N 5 CMP "O5'" "C5'" SING N N 6 CMP "C5'" "C4'" SING N N 7 CMP "C5'" "H5'1" SING N N 8 CMP "C5'" "H5'2" SING N N 9 CMP "C4'" "O4'" SING N N 10 CMP "C4'" "C3'" SING N N 11 CMP "C4'" "H4'" SING N N 12 CMP "O4'" "C1'" SING N N 13 CMP "C3'" "O3'" SING N N 14 CMP "C3'" "C2'" SING N N 15 CMP "C3'" "H3'" SING N N 16 CMP "C2'" "O2'" SING N N 17 CMP "C2'" "C1'" SING N N 18 CMP "C2'" "H2'" SING N N 19 CMP "O2'" "HO2'" SING N N 20 CMP "C1'" N9 SING N N 21 CMP "C1'" "H1'" SING N N 22 CMP N9 C8 SING Y N 23 CMP N9 C4 SING Y N 24 CMP C8 N7 DOUB Y N 25 CMP C8 H8 SING N N 26 CMP N7 C5 SING Y N 27 CMP C5 C6 SING Y N 28 CMP C5 C4 DOUB Y N 29 CMP C6 N6 SING N N 30 CMP C6 N1 DOUB Y N 31 CMP N6 HN61 SING N N 32 CMP N6 HN62 SING N N 33 CMP N1 C2 SING Y N 34 CMP C2 N3 DOUB Y N 35 CMP C2 H2 SING N N 36 CMP N3 C4 SING Y N 37 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor CMP SMILES ACDLabs 10.04 "O=P3(OCC4OC(n1c2ncnc(N)c2nc1)C(O)C4O3)O" CMP SMILES_CANONICAL CACTVS 3.341 "Nc1ncnc2n(cnc12)[C@@H]3O[C@@H]4CO[P@](O)(=O)O[C@H]4[C@H]3O" CMP SMILES CACTVS 3.341 "Nc1ncnc2n(cnc12)[CH]3O[CH]4CO[P](O)(=O)O[CH]4[CH]3O" CMP SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@H]4[C@H](O3)CO[P@](=O)(O4)O)O)N" CMP SMILES "OpenEye OEToolkits" 1.5.0 "c1nc(c2c(n1)n(cn2)C3C(C4C(O3)COP(=O)(O4)O)O)N" CMP InChI InChI 1.03 "InChI=1S/C10H12N5O6P/c11-8-5-9(13-2-12-8)15(3-14-5)10-6(16)7-4(20-10)1-19-22(17,18)21-7/h2-4,6-7,10,16H,1H2,(H,17,18)(H2,11,12,13)/t4-,6-,7-,10-/m1/s1" CMP InChIKey InChI 1.03 IVOMOUWHDPKRLL-KQYNXXCUSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier CMP "SYSTEMATIC NAME" ACDLabs 10.04 "(2R,4aR,6R,7R,7aS)-6-(6-amino-9H-purin-9-yl)tetrahydro-4H-furo[3,2-d][1,3,2]dioxaphosphinine-2,7-diol 2-oxide" CMP "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(1R,4R,6S,7R,8R)-8-(6-aminopurin-9-yl)-4-hydroxy-4-oxo-3,5,9-trioxa-4$l^{5}-phosphabicyclo[4.3.0]nonan-7-ol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site CMP "Create component" 1999-07-08 EBI CMP "Modify descriptor" 2011-06-04 RCSB CMP "Modify synonyms" 2020-05-28 PDBE # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 CMP "CYCLIC AMP" ? ? 2 CMP CAMP ? ? #