data_CMU
#
_chem_comp.id CMU
_chem_comp.name "5-CHLORO-6-(1-(2-IMINOPYRROLIDINYL) METHYL) URACIL"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C9 H11 Cl N4 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "5-CHLORO-6-[(2-IMINOPYRROLIDIN-1-YL)METHYL]PYRIMIDINE-2,4(1H,3H)-DIONE"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2003-09-23
_chem_comp.pdbx_modified_date 2021-03-13
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 242.662
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code CMU
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details "OpenEye/OEToolkits V1.4.2"
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1UOU
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
CMU CL1 CL1 CL 0 0 N N N -4.802 4.529 30.601 4.080 4.798 -1.185 CL1 CMU 1
CMU C2 C2 C 0 1 N N N -3.589 3.293 30.616 2.838 5.400 -0.152 C2 CMU 2
CMU C3 C3 C 0 1 N N N -3.112 2.764 29.462 1.560 4.988 -0.198 C3 CMU 3
CMU C4 C4 C 0 1 N N N -3.629 3.166 28.078 1.013 3.966 -1.128 C4 CMU 4
CMU N5 N5 N 0 1 N N N -4.265 1.945 27.496 1.135 2.678 -0.491 N5 CMU 5
CMU C6 C6 C 0 1 N N N -5.294 1.131 28.179 0.251 2.309 0.601 C6 CMU 6
CMU C7 C7 C 0 1 N N N -5.824 0.142 27.113 0.889 1.014 1.109 C7 CMU 7
CMU C8 C8 C 0 1 N N N -4.792 0.145 25.944 1.544 0.385 -0.122 C8 CMU 8
CMU C9 C9 C 0 1 N N N -3.976 1.396 26.267 1.858 1.603 -0.962 C9 CMU 9
CMU N10 N10 N 0 1 N N N -3.116 1.927 25.450 2.674 1.511 -1.956 N10 CMU 10
CMU N11 N11 N 0 1 N N N -2.149 1.793 29.571 0.624 5.519 0.665 N11 CMU 11
CMU C12 C12 C 0 1 N N N -1.673 1.349 30.755 0.901 6.485 1.618 C12 CMU 12
CMU O13 O13 O 0 1 N N N -0.820 0.470 30.761 0.044 6.940 2.375 O13 CMU 13
CMU N14 N14 N 0 1 N N N -2.145 1.864 31.907 2.230 6.900 1.652 N14 CMU 14
CMU C15 C15 C 0 1 N N N -3.073 2.830 31.860 3.252 6.437 0.836 C15 CMU 15
CMU O16 O16 O 0 1 N N N -3.474 3.313 32.893 4.409 6.841 0.914 O16 CMU 16
CMU H4C1 1H4C H 0 0 N N N -4.369 3.975 28.168 1.584 3.985 -2.060 H4C1 CMU 17
CMU H4C2 2H4C H 0 0 N N N -2.813 3.535 27.439 -0.036 4.191 -1.335 H4C2 CMU 18
CMU H6C1 1H6C H 0 0 N N N -4.851 0.583 29.024 -0.760 2.125 0.224 H6C1 CMU 19
CMU H6C2 2H6C H 0 0 N N N -6.101 1.757 28.587 0.215 3.073 1.383 H6C2 CMU 20
CMU H7C1 1H7C H 0 0 N N N -5.908 -0.868 27.542 0.164 0.349 1.587 H7C1 CMU 21
CMU H7C2 2H7C H 0 0 N N N -6.822 0.440 26.760 1.663 1.254 1.849 H7C2 CMU 22
CMU H8C1 1H8C H 0 0 N N N -5.291 0.231 24.967 0.842 -0.251 -0.670 H8C1 CMU 23
CMU H8C2 2H8C H 0 0 N N N -4.194 -0.775 25.869 2.445 -0.180 0.126 H8C2 CMU 24
CMU H10 H10 H 0 1 N N N -2.638 2.762 25.704 2.765 2.428 -2.405 H10 CMU 25
CMU HN1 HN1 H 0 1 N N N -1.781 1.394 28.732 -0.330 5.178 0.595 HN1 CMU 26
CMU HN2 HN2 H 0 1 N N N -1.807 1.530 32.787 2.473 7.609 2.338 HN2 CMU 27
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
CMU CL1 C2 SING N N 1
CMU C2 C3 DOUB N N 2
CMU C2 C15 SING N N 3
CMU C3 C4 SING N N 4
CMU C3 N11 SING N N 5
CMU C4 N5 SING N N 6
CMU C4 H4C1 SING N N 7
CMU C4 H4C2 SING N N 8
CMU N5 C6 SING N N 9
CMU N5 C9 SING N N 10
CMU C6 C7 SING N N 11
CMU C6 H6C1 SING N N 12
CMU C6 H6C2 SING N N 13
CMU C7 C8 SING N N 14
CMU C7 H7C1 SING N N 15
CMU C7 H7C2 SING N N 16
CMU C8 C9 SING N N 17
CMU C8 H8C1 SING N N 18
CMU C8 H8C2 SING N N 19
CMU C9 N10 DOUB N N 20
CMU N10 H10 SING N N 21
CMU N11 C12 SING N N 22
CMU C12 O13 DOUB N N 23
CMU C12 N14 SING N N 24
CMU N14 C15 SING N N 25
CMU C15 O16 DOUB N N 26
CMU HN1 N11 SING N N 27
CMU HN2 N14 SING N N 28
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
CMU SMILES ACDLabs 10.04 "ClC1=C(NC(=O)NC1=O)CN2C(=[N@H])CCC2"
CMU SMILES_CANONICAL CACTVS 3.341 "ClC1=C(CN2CCCC2=N)NC(=O)NC1=O"
CMU SMILES CACTVS 3.341 "ClC1=C(CN2CCCC2=N)NC(=O)NC1=O"
CMU SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "[H]/N=C\1/CCCN1CC2=C(C(=O)NC(=O)N2)Cl"
CMU SMILES "OpenEye OEToolkits" 1.5.0 "[H]N=C1CCCN1CC2=C(C(=O)NC(=O)N2)Cl"
CMU InChI InChI 1.03 "InChI=1S/C9H11ClN4O2/c10-7-5(12-9(16)13-8(7)15)4-14-3-1-2-6(14)11/h11H,1-4H2,(H2,12,13,15,16)/b11-6-"
CMU InChIKey InChI 1.03 QQHMKNYGKVVGCZ-WDZFZDKYSA-N
# #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
CMU "SYSTEMATIC NAME" ACDLabs 10.04 "5-chloro-6-{[(2Z)-2-iminopyrrolidin-1-yl]methyl}pyrimidine-2,4(1H,3H)-dione"
CMU "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "5-chloro-6-[(2-iminopyrrolidin-1-yl)methyl]-1H-pyrimidine-2,4-dione"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
CMU "Create component" 2003-09-23 EBI
CMU "Modify descriptor" 2011-06-04 RCSB
CMU "Modify synonyms" 2021-03-13 RCSB
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id CMU
_pdbx_chem_comp_synonyms.name "5-CHLORO-6-[(2-IMINOPYRROLIDIN-1-YL)METHYL]PYRIMIDINE-2,4(1H,3H)-DIONE"
_pdbx_chem_comp_synonyms.provenance PDB
_pdbx_chem_comp_synonyms.type ?
##