data_CNU
#

_chem_comp.id                                   CNU
_chem_comp.name                                 "5-CYANO-URIDINE-5'-MONOPHOSPHATE"
_chem_comp.type                                 "RNA linking"
_chem_comp.pdbx_type                            ATOMN
_chem_comp.formula                              "C10 H12 N3 O9 P"
_chem_comp.mon_nstd_parent_comp_id              U
_chem_comp.pdbx_synonyms                        "5-cyano-UMP; 5-cyanouridine 5'-(dihydrogen phosphate)"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2007-12-14
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       349.191
_chem_comp.one_letter_code                      U
_chem_comp.three_letter_code                    CNU
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3BK0
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
CNU  O1P     O1P     O  0  1  N  N  N  26.950   -8.123  13.316  -5.636  -0.193  -0.101  O1P     CNU   1  
CNU  P       P       P  0  1  N  N  N  25.987   -8.452  14.421  -4.549  -1.144   0.224  P       CNU   2  
CNU  O2P     O2P     O  0  1  N  N  N  24.652   -8.954  13.871  -4.983  -2.044   1.486  O2P     CNU   3  
CNU  O3P     O3P     O  0  1  N  Y  N  26.504   -9.214  15.609  -4.272  -2.096  -1.044  O3P     CNU   4  
CNU  "O5'"   "O5'"   O  0  1  N  N  N  25.708   -7.057  15.170  -3.210  -0.325   0.583  "O5'"   CNU   5  
CNU  "C5'"   "C5'"   C  0  1  N  N  N  24.919   -6.024  14.587  -2.631   0.643  -0.294  "C5'"   CNU   6  
CNU  "C4'"   "C4'"   C  0  1  N  N  R  24.895   -4.863  15.576  -1.374   1.229   0.352  "C4'"   CNU   7  
CNU  "O4'"   "O4'"   O  0  1  N  N  N  24.234   -3.756  14.983  -0.325   0.237   0.400  "O4'"   CNU   8  
CNU  "C3'"   "C3'"   C  0  1  N  N  S  24.143   -5.192  16.857  -0.801   2.367  -0.522  "C3'"   CNU   9  
CNU  "O3'"   "O3'"   O  0  1  N  N  N  24.749   -4.482  17.965  -1.212   3.639  -0.020  "O3'"   CNU  10  
CNU  "C2'"   "C2'"   C  0  1  N  N  R  22.736   -4.680  16.546   0.730   2.203  -0.394  "C2'"   CNU  11  
CNU  "O2'"   "O2'"   O  0  1  N  N  N  22.048   -4.362  17.764   1.311   3.371   0.191  "O2'"   CNU  12  
CNU  "C1'"   "C1'"   C  0  1  N  N  R  23.004   -3.444  15.701   0.901   0.986   0.542  "C1'"   CNU  13  
CNU  N1      N1      N  0  1  N  N  N  21.937   -3.113  14.744   2.046   0.175   0.120  N1      CNU  14  
CNU  C2      C2      C  0  1  N  N  N  21.538   -3.995  13.714   2.037  -0.389  -1.098  C2      CNU  15  
CNU  O2      O2      O  0  1  N  N  N  22.076   -5.134  13.655   1.077  -0.212  -1.822  O2      CNU  16  
CNU  N3      N3      N  0  1  N  N  N  20.578   -3.614  12.826   3.057  -1.143  -1.544  N3      CNU  17  
CNU  C4      C4      C  0  1  N  N  N  20.007   -2.389  12.866   4.139  -1.359  -0.766  C4      CNU  18  
CNU  O4      O4      O  0  1  N  N  N  19.126   -2.041  12.023   5.065  -2.040  -1.165  O4      CNU  19  
CNU  C6      C6      C  0  1  N  N  N  21.403   -1.878  14.844   3.097   0.015   0.969  C6      CNU  20  
CNU  C5      C5      C  0  1  N  N  N  20.429   -1.450  13.928   4.174  -0.752   0.574  C5      CNU  21  
CNU  C52     C52     C  0  1  N  N  N  19.919   -0.262  14.017   5.296  -0.948   1.442  C52     CNU  22  
CNU  N53     N53     N  0  1  N  N  N  19.438    0.800  14.072   6.186  -1.104   2.131  N53     CNU  23  
CNU  HO2P    HO2P    H  0  0  N  N  N  24.034   -9.058  14.585  -5.784  -2.566   1.341  HO2P    CNU  24  
CNU  HO3P    HO3P    H  0  0  N  Y  N  26.613  -10.129  15.376  -3.570  -2.745  -0.903  HO3P    CNU  25  
CNU  "H5'"   "H5'"   H  0  1  N  N  N  25.360   -5.702  13.632  -2.367   0.167  -1.238  "H5'"   CNU  26  
CNU  "H5'A"  "H5'A"  H  0  0  N  N  N  23.899   -6.382  14.381  -3.350   1.442  -0.479  "H5'A"  CNU  27  
CNU  "H4'"   "H4'"   H  0  1  N  N  N  25.944   -4.644  15.825  -1.598   1.596   1.353  "H4'"   CNU  28  
CNU  "H3'"   "H3'"   H  0  1  N  N  N  24.151   -6.254  17.143  -1.114   2.247  -1.559  "H3'"   CNU  29  
CNU  "HO3'"  "HO3'"  H  0  0  N  Y  N  24.882   -5.081  18.691  -0.880   4.390  -0.531  "HO3'"  CNU  30  
CNU  "H2'"   "H2'"   H  0  1  N  N  N  22.094   -5.408  16.029   1.176   2.004  -1.369  "H2'"   CNU  31  
CNU  "HO2'"  "HO2'"  H  0  0  N  N  N  22.676   -4.292  18.474   1.181   4.177  -0.326  "HO2'"  CNU  32  
CNU  "H1'"   "H1'"   H  0  1  N  N  N  23.068   -2.558  16.350   1.028   1.316   1.573  "H1'"   CNU  33  
CNU  HN3     HN3     H  0  1  N  N  N  20.286   -4.261  12.122   3.015  -1.534  -2.430  HN3     CNU  34  
CNU  H6      H6      H  0  1  N  N  N  21.727   -1.215  15.633   3.086   0.481   1.943  H6      CNU  35  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
CNU  O1P    P       DOUB  N  N   1  
CNU  O2P    P       SING  N  N   2  
CNU  P      "O5'"   SING  N  N   3  
CNU  P      O3P     SING  N  N   4  
CNU  O2P    HO2P    SING  N  N   5  
CNU  O3P    HO3P    SING  N  N   6  
CNU  "C5'"  "O5'"   SING  N  N   7  
CNU  "C5'"  "C4'"   SING  N  N   8  
CNU  "C5'"  "H5'"   SING  N  N   9  
CNU  "C5'"  "H5'A"  SING  N  N  10  
CNU  "O4'"  "C4'"   SING  N  N  11  
CNU  "C4'"  "C3'"   SING  N  N  12  
CNU  "C4'"  "H4'"   SING  N  N  13  
CNU  "O4'"  "C1'"   SING  N  N  14  
CNU  "C2'"  "C3'"   SING  N  N  15  
CNU  "C3'"  "O3'"   SING  N  N  16  
CNU  "C3'"  "H3'"   SING  N  N  17  
CNU  "O3'"  "HO3'"  SING  N  N  18  
CNU  "C1'"  "C2'"   SING  N  N  19  
CNU  "C2'"  "O2'"   SING  N  N  20  
CNU  "C2'"  "H2'"   SING  N  N  21  
CNU  "O2'"  "HO2'"  SING  N  N  22  
CNU  N1     "C1'"   SING  N  N  23  
CNU  "C1'"  "H1'"   SING  N  N  24  
CNU  C2     N1      SING  N  N  25  
CNU  N1     C6      SING  N  N  26  
CNU  N3     C2      SING  N  N  27  
CNU  O2     C2      DOUB  N  N  28  
CNU  N3     C4      SING  N  N  29  
CNU  N3     HN3     SING  N  N  30  
CNU  O4     C4      DOUB  N  N  31  
CNU  C4     C5      SING  N  N  32  
CNU  C5     C6      DOUB  N  N  33  
CNU  C6     H6      SING  N  N  34  
CNU  C5     C52     SING  N  N  35  
CNU  C52    N53     TRIP  N  N  36  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
CNU  SMILES            ACDLabs               10.04  "N#CC=1C(=O)NC(=O)N(C=1)C2OC(C(O)C2O)COP(=O)(O)O"  
CNU  SMILES_CANONICAL  CACTVS                3.341  "O[C@H]1[C@@H](O)[C@@H](O[C@@H]1CO[P](O)(O)=O)N2C=C(C#N)C(=O)NC2=O"  
CNU  SMILES            CACTVS                3.341  "O[CH]1[CH](O)[CH](O[CH]1CO[P](O)(O)=O)N2C=C(C#N)C(=O)NC2=O"  
CNU  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "C1=C(C(=O)NC(=O)N1[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)O)C#N"  
CNU  SMILES            "OpenEye OEToolkits"  1.5.0  "C1=C(C(=O)NC(=O)N1C2C(C(C(O2)COP(=O)(O)O)O)O)C#N"  
CNU  InChI             InChI                 1.03   "InChI=1S/C10H12N3O9P/c11-1-4-2-13(10(17)12-8(4)16)9-7(15)6(14)5(22-9)3-21-23(18,19)20/h2,5-7,9,14-15H,3H2,(H,12,16,17)(H2,18,19,20)/t5-,6-,7-,9-/m1/s1"  
CNU  InChIKey          InChI                 1.03   BUHKUGLYORHFNN-JXOAFFINSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
CNU  "SYSTEMATIC NAME"  ACDLabs               10.04  "5-cyanouridine 5'-(dihydrogen phosphate)"  
CNU  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "[(2R,3S,4R,5R)-5-(5-cyano-2,4-dioxo-pyrimidin-1-yl)-3,4-dihydroxy-oxolan-2-yl]methyl dihydrogen phosphate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
CNU  "Create component"   2007-12-14  RCSB  
CNU  "Modify descriptor"  2011-06-04  RCSB  
CNU  "Modify synonyms"    2020-06-05  PDBE  
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  CNU  5-cyano-UMP                                 ?  ?  
2  CNU  "5-cyanouridine 5'-(dihydrogen phosphate)"  ?  ?  
##