data_CO6 # _chem_comp.id CO6 _chem_comp.name "ISOBUTYRYL-COENZYME A" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H42 N7 O17 P3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms IB-CO6 _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-10-11 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 837.624 _chem_comp.one_letter_code ? _chem_comp.three_letter_code CO6 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal CO6 N1A AN1 N 0 1 Y N N 25.769 44.761 6.827 11.180 1.187 -7.737 N1A CO6 1 CO6 C2A AC2 C 0 1 Y N N 26.313 43.686 7.379 11.845 2.345 -7.506 C2A CO6 2 CO6 N3A AN3 N 0 1 Y N N 27.346 43.719 8.216 11.601 3.289 -6.571 N3A CO6 3 CO6 C4A AC4 C 0 1 Y N N 27.878 44.938 8.502 10.542 2.946 -5.823 C4A CO6 4 CO6 C5A AC5 C 0 1 Y N N 27.424 46.085 8.008 9.768 1.803 -5.940 C5A CO6 5 CO6 C6A AC6 C 0 1 Y N N 26.285 45.976 7.097 10.120 0.905 -6.942 C6A CO6 6 CO6 N6A AN6 N 0 1 N N N 25.806 47.059 6.578 9.390 -0.281 -7.132 N6A CO6 7 CO6 N7A AN7 N 0 1 Y N N 28.124 47.169 8.459 8.769 1.795 -4.999 N7A CO6 8 CO6 C8A AC8 C 0 1 Y N N 29.049 46.672 9.282 8.933 2.912 -4.323 C8A CO6 9 CO6 N9A AN9 N 0 1 Y N N 28.881 45.366 9.302 9.995 3.646 -4.784 N9A CO6 10 CO6 C1B AC1* C 0 1 N N R 29.548 44.329 10.088 10.449 4.933 -4.255 C1B CO6 11 CO6 C2B AC2* C 0 1 N N R 30.856 44.666 10.704 9.729 6.136 -4.866 C2B CO6 12 CO6 O2B AO2* O 0 1 N N N 31.657 43.447 10.473 10.676 7.172 -5.120 O2B CO6 13 CO6 C3B AC3* C 0 1 N N S 30.543 44.704 12.224 8.755 6.537 -3.774 C3B CO6 14 CO6 O3B AO3* O 0 1 N N N 31.673 44.372 12.983 8.398 7.902 -3.813 O3B CO6 15 CO6 P3B AP3* P 0 1 N N N 32.654 45.581 13.556 7.679 8.463 -5.144 P3B CO6 16 CO6 O7A AO7 O 0 1 N N N 33.625 44.766 14.353 8.480 8.330 -6.406 O7A CO6 17 CO6 O8A AO8 O 0 1 N N N 31.834 46.569 14.391 7.259 9.974 -4.749 O8A CO6 18 CO6 O9A AO9 O 0 1 N N N 33.254 46.235 12.344 6.269 7.672 -5.143 O9A CO6 19 CO6 C4B AC4* C 0 1 N N R 29.399 43.677 12.371 9.522 6.182 -2.512 C4B CO6 20 CO6 O4B AO4* O 0 1 N N N 28.650 43.853 11.149 10.229 4.971 -2.828 O4B CO6 21 CO6 C5B AC5* C 0 1 N N N 28.398 43.960 13.496 8.630 5.956 -1.305 C5B CO6 22 CO6 O5B AO5* O 0 1 N N N 28.116 45.371 13.501 7.905 7.144 -1.038 O5B CO6 23 CO6 P1A AP1 P 0 1 N N S 27.340 46.011 14.764 6.435 7.061 -0.365 P1A CO6 24 CO6 O1A AO1 O 0 1 N N N 28.015 45.629 16.086 5.767 8.385 -0.130 O1A CO6 25 CO6 O2A AO2 O 0 1 N N N 27.140 47.425 14.480 5.603 6.053 -1.317 O2A CO6 26 CO6 O3A AO3 O 0 1 N N N 25.969 45.201 14.732 6.699 6.193 0.973 O3A CO6 27 CO6 P2A AP2 P 0 1 N N R 24.547 45.608 14.120 7.563 6.522 2.299 P2A CO6 28 CO6 O4A AO4 O 0 1 N N N 23.828 46.622 14.995 9.023 6.773 2.059 O4A CO6 29 CO6 O5A AO5 O 0 1 N N N 24.732 45.958 12.632 6.761 7.753 2.975 O5A CO6 30 CO6 O6A AO6 O 0 1 N N N 23.756 44.256 14.172 7.200 5.250 3.225 O6A CO6 31 CO6 CBP PC11 C 0 1 N N N 23.340 41.939 13.540 5.671 3.723 4.382 CBP CO6 32 CO6 CCP PC12 C 0 1 N N N 24.375 42.969 14.038 5.827 4.972 3.480 CCP CO6 33 CO6 CDP PC13 C 0 1 N N N 23.948 40.521 13.620 6.403 3.980 5.721 CDP CO6 34 CO6 CEP PC14 C 0 1 N N N 22.130 41.999 14.525 4.181 3.497 4.705 CEP CO6 35 CO6 CAP PC10 C 0 1 N N R 22.875 42.264 12.115 6.294 2.463 3.710 CAP CO6 36 CO6 OAP PO10 O 0 1 N N N 23.999 42.084 11.218 6.129 1.334 4.563 OAP CO6 37 CO6 C9P PC9 C 0 1 N N N 21.710 41.433 11.612 5.664 2.090 2.370 C9P CO6 38 CO6 O9P PO9 O 0 1 N N N 20.572 41.823 11.800 4.666 1.376 2.290 O9P CO6 39 CO6 N8P PN8 N 0 1 N N N 22.006 40.286 10.885 6.322 2.659 1.291 N8P CO6 40 CO6 C7P PC7 C 0 1 N N N 20.943 39.512 10.315 5.897 2.473 -0.077 C7P CO6 41 CO6 C6P PC6 C 0 1 N N N 20.213 38.573 11.335 6.581 1.247 -0.667 C6P CO6 42 CO6 C5P PC5 C 0 1 N N N 21.077 37.732 12.177 6.189 1.003 -2.113 C5P CO6 43 CO6 O5P PO5 O 0 1 N N N 21.928 37.060 11.671 5.404 1.720 -2.727 O5P CO6 44 CO6 N4P PN4 N 0 1 N N N 20.876 37.869 13.543 6.824 -0.117 -2.631 N4P CO6 45 CO6 C3P PC3 C 0 1 N N N 21.835 37.491 14.583 6.624 -0.574 -3.987 C3P CO6 46 CO6 C2P PC2 C 0 1 N N N 21.635 36.107 14.958 5.475 -1.564 -4.118 C2P CO6 47 CO6 S1P PS1 S 0 1 N N N 23.006 35.535 16.044 5.756 -3.076 -3.148 S1P CO6 48 CO6 O1 O1 O 0 1 N N N ? ? ? 3.454 -3.566 -4.342 O1 CO6 49 CO6 C1 C1 C 0 1 N N N ? ? ? 4.318 -4.001 -3.590 C1 CO6 50 CO6 C2 C2 C 0 1 N N N ? ? ? 3.538 -5.239 -1.578 C2 CO6 51 CO6 C3 C3 C 0 1 N N N ? ? ? 4.241 -5.368 -2.925 C3 CO6 52 CO6 C4 C4 C 0 1 N N N ? ? ? 3.504 -6.351 -3.833 C4 CO6 53 CO6 H2 H2 H 0 1 N N N 25.891 42.723 7.134 12.688 2.539 -8.160 H2 CO6 54 CO6 HN61 1HN6 H 0 0 N N N 25.682 47.746 7.294 9.401 -0.986 -6.420 HN61 CO6 55 CO6 HN62 2HN6 H 0 0 N N N 26.441 47.407 5.888 8.945 -0.449 -8.014 HN62 CO6 56 CO6 H8 H8 H 0 1 N N N 29.793 47.233 9.827 8.319 3.243 -3.495 H8 CO6 57 CO6 "H1'" H1* H 0 1 N N N 29.782 43.561 9.336 11.529 4.953 -4.436 "H1'" CO6 58 CO6 "H2'" H2* H 0 1 N N N 31.339 45.585 10.340 9.230 5.921 -5.816 "H2'" CO6 59 CO6 H1 H1 H 0 1 N N N 31.829 43.352 9.544 10.176 7.959 -5.399 H1 CO6 60 CO6 "H3'" H3* H 0 1 N N N 30.256 45.700 12.592 7.847 5.927 -3.850 "H3'" CO6 61 CO6 HO8 HO8 H 0 1 N N N 31.664 46.196 15.248 6.854 10.548 -5.434 HO8 CO6 62 CO6 HO9 HO9 H 0 1 N N N 33.381 47.161 12.513 5.670 7.769 -5.914 HO9 CO6 63 CO6 "H4'" H4* H 0 1 N N N 29.837 42.690 12.581 10.259 6.956 -2.264 "H4'" CO6 64 CO6 "H5'1" 1H5* H 0 0 N N N 27.471 43.393 13.324 9.230 5.704 -0.426 "H5'1" CO6 65 CO6 "H5'2" 2H5* H 0 0 N N N 28.819 43.653 14.465 7.920 5.146 -1.498 "H5'2" CO6 66 CO6 HO2 HO2 H 0 1 N N N 27.096 47.909 15.296 4.643 5.932 -1.155 HO2 CO6 67 CO6 HO5 HO5 H 0 1 N N N 24.770 46.902 12.531 6.867 8.653 2.599 HO5 CO6 68 CO6 H121 1H12 H 0 0 N N N 25.200 43.035 13.314 5.396 5.858 3.959 H121 CO6 69 CO6 H122 2H12 H 0 0 N N N 24.763 42.649 15.016 5.330 4.827 2.516 H122 CO6 70 CO6 H131 1H13 H 0 0 N N N 24.093 40.126 12.604 6.360 3.095 6.367 H131 CO6 71 CO6 H132 2H13 H 0 0 N N N 24.918 40.567 14.137 5.952 4.811 6.275 H132 CO6 72 CO6 H133 3H13 H 0 0 N N N 23.266 39.861 14.176 7.458 4.227 5.561 H133 CO6 73 CO6 H141 1H14 H 0 0 N N N 22.500 42.013 15.561 3.770 4.317 5.305 H141 CO6 74 CO6 H142 2H14 H 0 0 N N N 21.545 42.911 14.332 4.037 2.573 5.275 H142 CO6 75 CO6 H143 3H14 H 0 0 N N N 21.492 41.115 14.376 3.576 3.433 3.794 H143 CO6 76 CO6 H10 H10 H 0 1 N N N 22.510 43.301 12.140 7.373 2.609 3.574 H10 CO6 77 CO6 H3 H3 H 0 1 N N N 23.686 42.045 10.322 5.218 1.024 4.437 H3 CO6 78 CO6 HN8 HN8 H 0 1 N N N 22.957 40.002 10.760 7.124 3.259 1.456 HN8 CO6 79 CO6 H71 1H7 H 0 1 N N N 20.198 40.210 9.905 4.808 2.355 -0.105 H71 CO6 80 CO6 H72 2H7 H 0 1 N N N 21.396 38.862 9.552 6.143 3.368 -0.658 H72 CO6 81 CO6 H61 1H6 H 0 1 N N N 19.626 39.215 12.008 6.324 0.355 -0.083 H61 CO6 82 CO6 H62 2H6 H 0 1 N N N 19.620 37.875 10.726 7.671 1.367 -0.620 H62 CO6 83 CO6 HN4 HN4 H 0 1 N N N 20.005 38.258 13.842 7.456 -0.638 -2.031 HN4 CO6 84 CO6 H31 1H3 H 0 1 N N N 22.858 37.620 14.199 6.407 0.316 -4.587 H31 CO6 85 CO6 H32 2H3 H 0 1 N N N 21.684 38.131 15.465 7.570 -0.995 -4.344 H32 CO6 86 CO6 H21 1H2 H 0 1 N N N 20.682 36.013 15.499 4.532 -1.114 -3.793 H21 CO6 87 CO6 H22 2H2 H 0 1 N N N 21.617 35.489 14.049 5.365 -1.860 -5.167 H22 CO6 88 CO6 H11 1H1 H 0 1 N N N ? ? ? 3.474 -6.211 -1.077 H11 CO6 89 CO6 H12 2H1 H 0 1 N N N ? ? ? 2.522 -4.847 -1.695 H12 CO6 90 CO6 H13 3H1 H 0 1 N N N ? ? ? 4.080 -4.554 -0.917 H13 CO6 91 CO6 H4 H4 H 0 1 N N N ? ? ? 5.253 -5.760 -2.767 H4 CO6 92 CO6 H41 1H4 H 0 1 N N N ? ? ? 3.492 -7.353 -3.391 H41 CO6 93 CO6 H42 2H4 H 0 1 N N N ? ? ? 3.992 -6.417 -4.811 H42 CO6 94 CO6 H43 3H4 H 0 1 N N N ? ? ? 2.466 -6.043 -4.001 H43 CO6 95 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal CO6 N1A C2A SING Y N 1 CO6 N1A C6A DOUB Y N 2 CO6 C2A N3A DOUB Y N 3 CO6 C2A H2 SING N N 4 CO6 N3A C4A SING Y N 5 CO6 C4A C5A DOUB Y N 6 CO6 C4A N9A SING Y N 7 CO6 C5A C6A SING Y N 8 CO6 C5A N7A SING Y N 9 CO6 C6A N6A SING N N 10 CO6 N6A HN61 SING N N 11 CO6 N6A HN62 SING N N 12 CO6 N7A C8A DOUB Y N 13 CO6 C8A N9A SING Y N 14 CO6 C8A H8 SING N N 15 CO6 N9A C1B SING N N 16 CO6 C1B C2B SING N N 17 CO6 C1B O4B SING N N 18 CO6 C1B "H1'" SING N N 19 CO6 C2B C3B SING N N 20 CO6 C2B O2B SING N N 21 CO6 C2B "H2'" SING N N 22 CO6 O2B H1 SING N N 23 CO6 C3B C4B SING N N 24 CO6 C3B O3B SING N N 25 CO6 C3B "H3'" SING N N 26 CO6 O3B P3B SING N N 27 CO6 P3B O7A DOUB N N 28 CO6 P3B O8A SING N N 29 CO6 P3B O9A SING N N 30 CO6 O8A HO8 SING N N 31 CO6 O9A HO9 SING N N 32 CO6 C4B C5B SING N N 33 CO6 C4B O4B SING N N 34 CO6 C4B "H4'" SING N N 35 CO6 C5B O5B SING N N 36 CO6 C5B "H5'1" SING N N 37 CO6 C5B "H5'2" SING N N 38 CO6 O5B P1A SING N N 39 CO6 P1A O1A DOUB N N 40 CO6 P1A O2A SING N N 41 CO6 P1A O3A SING N N 42 CO6 O2A HO2 SING N N 43 CO6 O3A P2A SING N N 44 CO6 P2A O4A DOUB N N 45 CO6 P2A O5A SING N N 46 CO6 P2A O6A SING N N 47 CO6 O5A HO5 SING N N 48 CO6 O6A CCP SING N N 49 CO6 CBP CAP SING N N 50 CO6 CBP CCP SING N N 51 CO6 CBP CDP SING N N 52 CO6 CBP CEP SING N N 53 CO6 CCP H121 SING N N 54 CO6 CCP H122 SING N N 55 CO6 CDP H131 SING N N 56 CO6 CDP H132 SING N N 57 CO6 CDP H133 SING N N 58 CO6 CEP H141 SING N N 59 CO6 CEP H142 SING N N 60 CO6 CEP H143 SING N N 61 CO6 CAP C9P SING N N 62 CO6 CAP OAP SING N N 63 CO6 CAP H10 SING N N 64 CO6 OAP H3 SING N N 65 CO6 C9P O9P DOUB N N 66 CO6 C9P N8P SING N N 67 CO6 N8P C7P SING N N 68 CO6 N8P HN8 SING N N 69 CO6 C7P C6P SING N N 70 CO6 C7P H71 SING N N 71 CO6 C7P H72 SING N N 72 CO6 C6P C5P SING N N 73 CO6 C6P H61 SING N N 74 CO6 C6P H62 SING N N 75 CO6 C5P N4P SING N N 76 CO6 C5P O5P DOUB N N 77 CO6 N4P C3P SING N N 78 CO6 N4P HN4 SING N N 79 CO6 C3P C2P SING N N 80 CO6 C3P H31 SING N N 81 CO6 C3P H32 SING N N 82 CO6 C2P S1P SING N N 83 CO6 C2P H21 SING N N 84 CO6 C2P H22 SING N N 85 CO6 S1P C1 SING N N 86 CO6 O1 C1 DOUB N N 87 CO6 C1 C3 SING N N 88 CO6 C2 C3 SING N N 89 CO6 C2 H11 SING N N 90 CO6 C2 H12 SING N N 91 CO6 C2 H13 SING N N 92 CO6 C3 C4 SING N N 93 CO6 C3 H4 SING N N 94 CO6 C4 H41 SING N N 95 CO6 C4 H42 SING N N 96 CO6 C4 H43 SING N N 97 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor CO6 SMILES ACDLabs 10.04 "O=C(SCCNC(=O)CCNC(=O)C(O)C(C)(C)COP(=O)(O)OP(=O)(O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3OP(=O)(O)O)C(C)C" CO6 SMILES_CANONICAL CACTVS 3.341 "CC(C)C(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)CO[P@@](O)(=O)O[P@@](O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O[P](O)(O)=O)n2cnc3c(N)ncnc23" CO6 SMILES CACTVS 3.341 "CC(C)C(=O)SCCNC(=O)CCNC(=O)[CH](O)C(C)(C)CO[P](O)(=O)O[P](O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O[P](O)(O)=O)n2cnc3c(N)ncnc23" CO6 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CC(C)C(=O)SCCNC(=O)CCNC(=O)[C@@H](C(C)(C)CO[P@](=O)(O)O[P@](=O)(O)OC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)OP(=O)(O)O)O" CO6 SMILES "OpenEye OEToolkits" 1.5.0 "CC(C)C(=O)SCCNC(=O)CCNC(=O)C(C(C)(C)COP(=O)(O)OP(=O)(O)OCC1C(C(C(O1)n2cnc3c2ncnc3N)O)OP(=O)(O)O)O" CO6 InChI InChI 1.03 "InChI=1S/C25H42N7O17P3S/c1-13(2)24(37)53-8-7-27-15(33)5-6-28-22(36)19(35)25(3,4)10-46-52(43,44)49-51(41,42)45-9-14-18(48-50(38,39)40)17(34)23(47-14)32-12-31-16-20(26)29-11-30-21(16)32/h11-14,17-19,23,34-35H,5-10H2,1-4H3,(H,27,33)(H,28,36)(H,41,42)(H,43,44)(H2,26,29,30)(H2,38,39,40)/t14-,17-,18-,19+,23-/m1/s1" CO6 InChIKey InChI 1.03 AEWHYWSPVRZHCT-NDZSKPAWSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier CO6 "SYSTEMATIC NAME" ACDLabs 10.04 "S-{(9R,13S,15R)-17-[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)tetrahydrofuran-2-yl]-9,13,15-trihydroxy-10,10-dimethyl-13,15-dioxido-4,8-dioxo-12,14,16-trioxa-3,7-diaza-13,15-diphosphaheptadec-1-yl} 2-methylpropanethioate (non-preferred name)" CO6 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "S-[2-[3-[[(2R)-4-[[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-4-hydroxy-3-phosphonooxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl]oxy-hydroxy-phosphoryl]oxy-2-hydroxy-3,3-dimethyl-butanoyl]amino]propanoylamino]ethyl] 2-methylpropanethioate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site CO6 "Create component" 2006-10-11 RCSB CO6 "Modify descriptor" 2011-06-04 RCSB CO6 "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id CO6 _pdbx_chem_comp_synonyms.name IB-CO6 _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##