data_COA # _chem_comp.id COA _chem_comp.name "COENZYME A" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAC _chem_comp.formula "C21 H36 N7 O16 P3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 767.534 _chem_comp.one_letter_code ? _chem_comp.three_letter_code COA _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1H16 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal COA N1A AN1 N 0 1 Y N N N N N 88.604 -84.694 -15.401 5.319 1.844 -8.048 N1A COA 1 COA C2A AC2 C 0 1 Y N N N N N 88.517 -85.362 -16.614 4.099 1.802 -8.549 C2A COA 2 COA N3A AN3 N 0 1 Y N N N N N 88.453 -84.811 -17.827 3.050 1.465 -7.829 N3A COA 3 COA C4A AC4 C 0 1 Y N N N N N 88.489 -83.464 -17.791 3.184 1.143 -6.546 C4A COA 4 COA C5A AC5 C 0 1 Y N N N N N 88.578 -82.623 -16.644 4.463 1.177 -5.964 C5A COA 5 COA C6A AC6 C 0 1 Y N N N N N 88.637 -83.315 -15.345 5.551 1.543 -6.774 C6A COA 6 COA N6A AN6 N 0 1 N N N N N N 88.719 -82.694 -14.209 6.834 1.590 -6.258 N6A COA 7 COA N7A AN7 N 0 1 Y N N N N N 88.593 -81.311 -16.984 4.320 0.817 -4.666 N7A COA 8 COA C8A AC8 C 0 1 Y N N N N N 88.514 -81.293 -18.313 3.066 0.575 -4.419 C8A COA 9 COA N9A AN9 N 0 1 Y N N N N N 88.444 -82.569 -18.860 2.324 0.765 -5.547 N9A COA 10 COA C1B AC1* C 0 1 N N R N N N 88.283 -82.893 -20.305 0.874 0.592 -5.671 C1B COA 11 COA C2B AC2* C 0 1 N N R N N N 89.169 -84.003 -20.810 0.522 -0.887 -5.972 C2B COA 12 COA O2B AO2* O 0 1 N N N N N N 90.493 -83.537 -21.068 0.574 -1.148 -7.376 O2B COA 13 COA C3B AC3* C 0 1 N N S N N N 88.447 -84.352 -22.103 -0.933 -0.988 -5.445 C3B COA 14 COA O3B AO3* O 0 1 N N N N N N 88.534 -83.338 -23.020 -1.864 -0.846 -6.519 O3B COA 15 COA P3B AP3* P 0 1 N N N N N N 88.567 -83.763 -24.632 -2.756 -2.186 -6.542 P3B COA 16 COA O7A AO7 O 0 1 N N N N N N 89.776 -84.773 -24.812 -3.463 -2.331 -5.250 O7A COA 17 COA O8A AO8 O 0 1 N N N N N N 88.868 -82.454 -25.462 -3.833 -2.094 -7.735 O8A COA 18 COA O9A AO9 O 0 1 N N N N N N 87.187 -84.445 -25.005 -1.802 -3.462 -6.777 O9A COA 19 COA C4B AC4* C 0 1 N N R N N N 86.997 -84.491 -21.556 -1.055 0.188 -4.457 C4B COA 20 COA O4B AO4* O 0 1 N N N N N N 86.957 -83.461 -20.476 0.223 0.843 -4.407 O4B COA 21 COA C5B AC5* C 0 1 N N N N N N 86.578 -85.793 -20.934 -1.426 -0.335 -3.068 C5B COA 22 COA O5B AO5* O 0 1 N N N N N N 86.663 -86.765 -22.015 -1.530 0.760 -2.158 O5B COA 23 COA P1A AP1 P 0 1 N N S N N N 85.512 -87.899 -22.132 -1.921 0.140 -0.724 P1A COA 24 COA O1A AO1 O 0 1 N N N N N N 85.973 -88.842 -23.231 -0.866 -0.803 -0.292 O1A COA 25 COA O2A AO2 O 0 1 N N N N N N 84.135 -87.325 -22.276 -3.324 -0.640 -0.842 O2A COA 26 COA O3A AO3 O 0 1 N N N N N N 85.544 -88.672 -20.806 -2.055 1.326 0.355 O3A COA 27 COA P2A AP2 P 0 1 N N S N N N 86.526 -89.838 -20.232 -2.445 0.637 1.757 P2A COA 28 COA O4A AO4 O 0 1 N N N N N N 85.941 -91.222 -20.387 -3.727 -0.087 1.611 O4A COA 29 COA O5A AO5 O 0 1 N N N N N N 87.913 -89.766 -20.815 -1.289 -0.397 2.186 O5A COA 30 COA O6A AO6 O 0 1 N N N N N N 86.631 -89.411 -18.674 -2.596 1.772 2.889 O6A COA 31 COA CBP PC11 C 0 1 N N N N N N 85.960 -88.636 -16.536 -3.101 2.128 5.225 CBP COA 32 COA CCP PC12 C 0 1 N N N N N N 85.521 -89.408 -17.812 -2.941 1.101 4.103 CCP COA 33 COA CDP PC13 C 0 1 N N N N N N 87.492 -88.790 -16.210 -1.784 2.884 5.416 CDP COA 34 COA CEP PC14 C 0 1 N N N N N N 85.602 -87.210 -16.950 -4.208 3.118 4.857 CEP COA 35 COA CAP PC10 C 0 1 N N R N N N 85.185 -89.137 -15.254 -3.470 1.410 6.525 CAP COA 36 COA OAP PO10 O 0 1 N N N N N N 85.502 -88.266 -14.128 -4.764 0.819 6.391 OAP COA 37 COA C9P PC9 C 0 1 N N N N N N 83.668 -89.166 -15.416 -2.453 0.335 6.811 C9P COA 38 COA O9P PO9 O 0 1 N N N N N N 83.089 -90.069 -16.224 -2.758 -0.832 6.699 O9P COA 39 COA N8P PN8 N 0 1 N N N N N N 82.996 -88.277 -14.719 -1.205 0.672 7.191 N8P COA 40 COA C7P PC7 C 0 1 N N N N N N 81.536 -88.193 -14.746 -0.240 -0.370 7.547 C7P COA 41 COA C6P PC6 C 0 1 N N N N N N 81.050 -88.284 -13.298 1.089 0.275 7.938 C6P COA 42 COA C5P PC5 C 0 1 N N N N N N 81.483 -89.572 -12.633 2.081 -0.797 8.305 C5P COA 43 COA O5P PO5 O 0 1 N N N N N N 81.508 -90.722 -13.248 1.756 -1.965 8.258 O5P COA 44 COA N4P PN4 N 0 1 N N N N N N 81.828 -89.421 -11.370 3.329 -0.460 8.685 N4P COA 45 COA C3P PC3 C 0 1 N N N N N N 82.305 -90.554 -10.461 4.294 -1.504 9.041 C3P COA 46 COA C2P PC2 C 0 1 N N N N N N 81.066 -91.302 -10.008 5.624 -0.857 9.432 C2P COA 47 COA S1P PS1 S 0 1 N N N N N N 81.437 -92.641 -8.819 6.818 -2.150 9.873 S1P COA 48 COA H2A AH2 H 0 1 N N N N N N 88.499 -86.423 -16.572 3.955 2.054 -9.590 H2A COA 49 COA H61A AH61 H 0 0 N N N N N N 88.759 -83.212 -13.361 7.577 1.844 -6.827 H61A COA 50 COA H62A AH62 H 0 0 N N N N N N 88.742 -81.700 -14.186 6.990 1.368 -5.326 H62A COA 51 COA H8A AH8 H 0 1 N N N N N N 88.505 -80.403 -18.891 2.670 0.269 -3.462 H8A COA 52 COA H1B AH1* H 0 1 N N N N N N 88.506 -81.957 -20.837 0.475 1.247 -6.445 H1B COA 53 COA H2B AH2* H 0 1 N N N N N N 89.304 -84.841 -20.111 1.182 -1.562 -5.427 H2B COA 54 COA HO2A AHO2 H 0 0 N N N N N N 91.099 -84.311 -21.186 1.484 -0.978 -7.658 HO2A COA 55 COA H3B AH3* H 0 1 N N N N N N 88.840 -85.231 -22.634 -1.087 -1.936 -4.930 H3B COA 56 COA HOA8 8HOA H 0 0 N N N N N N 88.887 -82.696 -26.380 -4.345 -2.914 -7.713 HOA8 COA 57 COA HOA9 9HOA H 0 0 N N N N N N 87.287 -85.430 -24.978 -1.362 -3.328 -7.628 HOA9 COA 58 COA H4B AH4* H 0 1 N N N N N N 86.314 -84.396 -22.413 -1.816 0.886 -4.805 H4B COA 59 COA H51A AH51 H 0 0 N N N N N N 87.257 -86.066 -20.113 -0.655 -1.023 -2.721 H51A COA 60 COA H52A AH52 H 0 0 N N N N N N 85.568 -85.741 -20.501 -2.382 -0.857 -3.120 H52A COA 61 COA HOA2 2HOA H 0 0 N N N N N N 83.460 -87.990 -22.345 -3.982 0.008 -1.125 HOA2 COA 62 COA HOA5 5HOA H 0 0 N N N N N N 88.486 -90.446 -20.480 -0.473 0.114 2.270 HOA5 COA 63 COA H121 1H12 H 0 0 N N N N N N 84.670 -88.901 -18.289 -2.152 0.396 4.365 H121 COA 64 COA H122 2H12 H 0 0 N N N N N N 85.201 -90.432 -17.569 -3.879 0.563 3.967 H122 COA 65 COA H131 1H13 H 0 0 N N N N N N 87.750 -89.858 -16.155 -0.972 2.170 5.556 H131 COA 66 COA H132 2H13 H 0 0 N N N N N N 88.085 -88.310 -17.002 -1.584 3.494 4.535 H132 COA 67 COA H133 3H13 H 0 0 N N N N N N 87.711 -88.310 -15.245 -1.858 3.526 6.294 H133 COA 68 COA H141 1H14 H 0 0 N N N N N N 84.508 -87.101 -16.982 -5.159 2.590 4.787 H141 COA 69 COA H142 2H14 H 0 0 N N N N N N 86.020 -86.501 -16.221 -4.276 3.889 5.625 H142 COA 70 COA H143 3H14 H 0 0 N N N N N N 86.020 -87.002 -17.946 -3.978 3.580 3.897 H143 COA 71 COA H10 H10 H 0 1 N N N N N N 85.516 -90.172 -15.085 -3.481 2.127 7.346 H10 COA 72 COA HO1 HO1 H 0 1 N N N N N N 84.663 -87.945 -13.712 -4.710 0.192 5.656 HO1 COA 73 COA HN8 HN8 H 0 1 N N N N N N 83.501 -87.635 -14.150 -0.945 1.606 7.229 HN8 COA 74 COA H71 1H7 H 0 1 N N N N N N 81.222 -87.237 -15.189 -0.624 -0.948 8.388 H71 COA 75 COA H72 2H7 H 0 1 N N N N N N 81.110 -89.006 -15.352 -0.087 -1.030 6.693 H72 COA 76 COA H61 1H6 H 0 1 N N N N N N 81.462 -87.436 -12.731 1.473 0.853 7.098 H61 COA 77 COA H62 2H6 H 0 1 N N N N N N 79.950 -88.260 -13.307 0.935 0.935 8.793 H62 COA 78 COA HN4 HN4 H 0 1 N N N N N N 81.774 -88.507 -10.981 3.589 0.473 8.722 HN4 COA 79 COA H31 1H3 H 0 1 N N N N N N 82.973 -91.229 -11.016 3.910 -2.082 9.881 H31 COA 80 COA H32 2H3 H 0 1 N N N N N N 82.866 -90.161 -9.600 4.448 -2.163 8.187 H32 COA 81 COA H21 1H2 H 0 1 N N N N N N 80.380 -90.588 -9.529 6.008 -0.279 8.591 H21 COA 82 COA H22 2H2 H 0 1 N N N N N N 80.617 -91.767 -10.898 5.470 -0.198 10.286 H22 COA 83 COA HS1 HS1 H 0 1 N N N N N N 80.661 -93.110 -8.535 7.885 -1.388 10.175 HS1 COA 84 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal COA N1A C2A SING Y N 1 COA N1A C6A DOUB Y N 2 COA C2A N3A DOUB Y N 3 COA C2A H2A SING N N 4 COA N3A C4A SING Y N 5 COA C4A C5A DOUB Y N 6 COA C4A N9A SING Y N 7 COA C5A C6A SING Y N 8 COA C5A N7A SING Y N 9 COA C6A N6A SING N N 10 COA N6A H61A SING N N 11 COA N6A H62A SING N N 12 COA N7A C8A DOUB Y N 13 COA C8A N9A SING Y N 14 COA C8A H8A SING N N 15 COA N9A C1B SING N N 16 COA C1B C2B SING N N 17 COA C1B O4B SING N N 18 COA C1B H1B SING N N 19 COA C2B O2B SING N N 20 COA C2B C3B SING N N 21 COA C2B H2B SING N N 22 COA O2B HO2A SING N N 23 COA C3B O3B SING N N 24 COA C3B C4B SING N N 25 COA C3B H3B SING N N 26 COA O3B P3B SING N N 27 COA P3B O7A DOUB N N 28 COA P3B O8A SING N N 29 COA P3B O9A SING N N 30 COA O8A HOA8 SING N N 31 COA O9A HOA9 SING N N 32 COA C4B O4B SING N N 33 COA C4B C5B SING N N 34 COA C4B H4B SING N N 35 COA C5B O5B SING N N 36 COA C5B H51A SING N N 37 COA C5B H52A SING N N 38 COA O5B P1A SING N N 39 COA P1A O1A DOUB N N 40 COA P1A O2A SING N N 41 COA P1A O3A SING N N 42 COA O2A HOA2 SING N N 43 COA O3A P2A SING N N 44 COA P2A O4A DOUB N N 45 COA P2A O5A SING N N 46 COA P2A O6A SING N N 47 COA O5A HOA5 SING N N 48 COA O6A CCP SING N N 49 COA CBP CCP SING N N 50 COA CBP CDP SING N N 51 COA CBP CEP SING N N 52 COA CBP CAP SING N N 53 COA CCP H121 SING N N 54 COA CCP H122 SING N N 55 COA CDP H131 SING N N 56 COA CDP H132 SING N N 57 COA CDP H133 SING N N 58 COA CEP H141 SING N N 59 COA CEP H142 SING N N 60 COA CEP H143 SING N N 61 COA CAP OAP SING N N 62 COA CAP C9P SING N N 63 COA CAP H10 SING N N 64 COA OAP HO1 SING N N 65 COA C9P O9P DOUB N N 66 COA C9P N8P SING N N 67 COA N8P C7P SING N N 68 COA N8P HN8 SING N N 69 COA C7P C6P SING N N 70 COA C7P H71 SING N N 71 COA C7P H72 SING N N 72 COA C6P C5P SING N N 73 COA C6P H61 SING N N 74 COA C6P H62 SING N N 75 COA C5P O5P DOUB N N 76 COA C5P N4P SING N N 77 COA N4P C3P SING N N 78 COA N4P HN4 SING N N 79 COA C3P C2P SING N N 80 COA C3P H31 SING N N 81 COA C3P H32 SING N N 82 COA C2P S1P SING N N 83 COA C2P H21 SING N N 84 COA C2P H22 SING N N 85 COA S1P HS1 SING N N 86 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor COA SMILES ACDLabs 10.04 "O=C(NCCS)CCNC(=O)C(O)C(C)(C)COP(=O)(O)OP(=O)(O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3OP(=O)(O)O" COA SMILES_CANONICAL CACTVS 3.341 "CC(C)(CO[P@@](O)(=O)O[P@](O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O[P](O)(O)=O)n2cnc3c(N)ncnc23)[C@@H](O)C(=O)NCCC(=O)NCCS" COA SMILES CACTVS 3.341 "CC(C)(CO[P](O)(=O)O[P](O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O[P](O)(O)=O)n2cnc3c(N)ncnc23)[CH](O)C(=O)NCCC(=O)NCCS" COA SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CC(C)(CO[P@](=O)(O)O[P@@](=O)(O)OC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)OP(=O)(O)O)[C@H](C(=O)NCCC(=O)NCCS)O" COA SMILES "OpenEye OEToolkits" 1.5.0 "CC(C)(COP(=O)(O)OP(=O)(O)OCC1C(C(C(O1)n2cnc3c2ncnc3N)O)OP(=O)(O)O)C(C(=O)NCCC(=O)NCCS)O" COA InChI InChI 1.03 "InChI=1S/C21H36N7O16P3S/c1-21(2,16(31)19(32)24-4-3-12(29)23-5-6-48)8-41-47(38,39)44-46(36,37)40-7-11-15(43-45(33,34)35)14(30)20(42-11)28-10-27-13-17(22)25-9-26-18(13)28/h9-11,14-16,20,30-31,48H,3-8H2,1-2H3,(H,23,29)(H,24,32)(H,36,37)(H,38,39)(H2,22,25,26)(H2,33,34,35)/t11-,14-,15-,16+,20-/m1/s1" COA InChIKey InChI 1.03 RGJOEKWQDUBAIZ-IBOSZNHHSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier COA "SYSTEMATIC NAME" ACDLabs 10.04 "[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)tetrahydrofuran-2-yl]methyl (3R)-3-hydroxy-2,2-dimethyl-4-oxo-4-({3-oxo-3-[(2-sulfanylethyl)amino]propyl}amino)butyl dihydrogen diphosphate (non-preferred name)" COA "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-4-hydroxy-3-phosphonooxy-oxolan-2-yl]methyl [hydroxy-[(3R)-3-hydroxy-2,2-dimethyl-4-oxo-4-[[3-oxo-3-(2-sulfanylethylamino)propyl]amino]butoxy]phosphoryl] hydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site COA "Create component" 1999-07-08 EBI COA "Modify descriptor" 2011-06-04 RCSB COA "Modify PCM" 2024-09-27 PDBE # loop_ _pdbx_chem_comp_pcm.pcm_id _pdbx_chem_comp_pcm.comp_id _pdbx_chem_comp_pcm.modified_residue_id _pdbx_chem_comp_pcm.type _pdbx_chem_comp_pcm.category _pdbx_chem_comp_pcm.position _pdbx_chem_comp_pcm.polypeptide_position _pdbx_chem_comp_pcm.comp_id_linking_atom _pdbx_chem_comp_pcm.modified_residue_id_linking_atom _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession 1 COA ALY None "Covalent chemical modification" "Amino-acid side chain" "Any position" S1P CH3 ? ? 2 COA ARG None "Covalent chemical modification" "Amino-acid side chain" "Any position" O5A NH1 ? ? 3 COA ASP None "Covalent chemical modification" "Amino-acid side chain" "Any position" S1P CG ? ? 4 COA CYS None "Covalent chemical modification" "Amino-acid side chain" "Any position" S1P SG ? ? 5 COA GLU None "Covalent chemical modification" "Amino-acid side chain" "Any position" S1P CD ? ? 6 COA PRK None "Covalent chemical modification" "Amino-acid side chain" "Any position" S1P CAF ? ? #