data_CPD
#
_chem_comp.id CPD
_chem_comp.name "[1-(3-DIMETHYLAMINO-PROPYL)-3-ETHYL-UREIDO]-[4-(2,2,2-TRIFLUORO-ACETYLAMINO)-BENZYL]PHOSPHINIC ACID-2-(2,2-DIHYDRO-ACETYLAMINO)-3-HYDROXY-1-(4-NITROPHENYL)-PROPYL ESTER"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C28 H36 Cl2 F3 N6 O8 P"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 743.496
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code CPD
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1HYX
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
CPD C1 C1 C 0 1 N N N 2.660 0.993 -17.767 3.368 -0.314 5.281 C1 CPD 1
CPD C2 C2 C 0 1 N N N 4.272 0.967 -17.848 2.129 -0.808 4.579 C2 CPD 2
CPD C3 C3 C 0 1 N N R 6.250 -0.625 -17.773 0.987 -1.663 2.604 C3 CPD 3
CPD C4 C4 C 0 1 N N N 6.239 -1.782 -18.850 1.380 -2.670 1.522 C4 CPD 4
CPD C5 C5 C 0 1 N N S 6.351 -1.291 -16.411 0.260 -0.480 1.961 C5 CPD 5
CPD C6 C6 C 0 1 Y N N 6.476 -0.392 -15.269 -0.127 0.511 3.027 C6 CPD 6
CPD C7 C7 C 0 1 Y N N 7.711 0.343 -15.046 -1.351 0.401 3.660 C7 CPD 7
CPD C8 C8 C 0 1 Y N N 5.354 -0.187 -14.390 0.742 1.527 3.375 C8 CPD 8
CPD C9 C9 C 0 1 Y N N 7.810 1.265 -13.964 -1.707 1.311 4.638 C9 CPD 9
CPD C10 C10 C 0 1 Y N N 5.449 0.724 -13.317 0.384 2.439 4.350 C10 CPD 10
CPD C11 C11 C 0 1 Y N N 6.669 1.450 -13.096 -0.839 2.330 4.983 C11 CPD 11
CPD C12 C12 C 0 1 N N N 6.924 -4.036 -14.474 0.733 -1.356 -0.937 C12 CPD 12
CPD C13 C13 C 0 1 Y N N 7.845 -3.353 -13.610 0.964 -0.872 -2.346 C13 CPD 13
CPD C14 C14 C 0 1 Y N N 9.263 -3.304 -13.880 1.811 0.195 -2.578 C14 CPD 14
CPD C15 C15 C 0 1 Y N N 7.288 -2.568 -12.534 0.333 -1.501 -3.404 C15 CPD 15
CPD C16 C16 C 0 1 Y N N 10.100 -2.468 -13.102 2.025 0.640 -3.868 C16 CPD 16
CPD C17 C17 C 0 1 Y N N 8.127 -1.733 -11.758 0.538 -1.057 -4.695 C17 CPD 17
CPD C18 C18 C 0 1 Y N N 9.549 -1.662 -12.036 1.389 0.014 -4.932 C18 CPD 18
CPD C19 C19 C 0 1 N N N 10.076 0.094 -10.286 2.803 0.968 -6.590 C19 CPD 19
CPD C20 C20 C 0 1 N N N 11.212 1.038 -9.661 2.997 1.568 -7.959 C20 CPD 20
CPD C21 C21 C 0 1 N N N 4.810 -4.666 -16.589 -2.492 -2.344 -0.973 C21 CPD 21
CPD C22 C22 C 0 1 N N N 2.973 -6.374 -16.129 -3.896 -4.203 -1.686 C22 CPD 22
CPD C23 C23 C 0 1 N N N 1.643 -6.594 -16.694 -5.077 -4.442 -2.629 C23 CPD 23
CPD C24 C24 C 0 1 N N N 6.764 -5.892 -17.194 -2.805 -0.134 -1.950 C24 CPD 24
CPD C25 C25 C 0 1 N N N 7.132 -6.359 -18.569 -3.900 0.562 -1.139 C25 CPD 25
CPD C26 C26 C 0 1 N N N 8.024 -7.529 -18.190 -4.660 1.537 -2.041 C26 CPD 26
CPD C27 C27 C 0 1 N N N 8.290 -8.936 -20.106 -6.399 3.122 -2.182 C27 CPD 27
CPD C28 C28 C 0 1 N N N 6.416 -9.336 -18.380 -6.685 1.170 -0.891 C28 CPD 28
CPD N1 N1 N 0 1 N N N 4.883 -0.187 -17.841 2.191 -1.183 3.286 N1 CPD 29
CPD N2 N2 N 1 1 N N N 6.755 2.403 -11.880 -1.220 3.305 6.029 N2 CPD 30
CPD N3 N3 N 0 1 N N N 10.437 -0.731 -11.308 1.604 0.463 -6.240 N3 CPD 31
CPD N4 N4 N 0 1 N N N 6.119 -4.556 -17.073 -2.077 -1.067 -1.086 N4 CPD 32
CPD N5 N5 N 0 1 N N N 3.923 -5.669 -17.139 -3.515 -2.789 -1.728 N5 CPD 33
CPD N6 N6 N 0 1 N N N 7.728 -8.869 -18.783 -5.711 2.206 -1.263 N6 CPD 34
CPD O1 O1 O 0 1 N N N 4.958 2.013 -17.817 1.076 -0.867 5.178 O1 CPD 35
CPD O2 O2 O 0 1 N N N 7.287 -1.316 -19.651 0.206 -3.138 0.857 O2 CPD 36
CPD O3 O3 O -1 1 N N N 7.816 2.933 -11.659 -0.455 4.203 6.333 O3 CPD 37
CPD O4 O4 O 0 1 N N N 5.745 2.539 -11.222 -2.299 3.210 6.587 O4 CPD 38
CPD O5 O5 O 0 1 N N N 7.360 -2.245 -16.514 -0.914 -0.949 1.295 O5 CPD 39
CPD O6 O6 O 0 1 N N N 8.636 -4.150 -16.766 -0.631 0.911 -0.385 O6 CPD 40
CPD O7 O7 O 0 1 N N N 4.381 -3.673 -15.899 -1.943 -3.094 -0.189 O7 CPD 41
CPD O8 O8 O 0 1 N N N 8.957 0.120 -9.807 3.726 0.940 -5.804 O8 CPD 42
CPD CL1 CL1 CL 0 0 N N N 2.154 1.906 -19.149 4.625 -1.607 5.262 CL1 CPD 43
CPD CL2 CL2 CL 0 0 N N N 2.346 1.755 -16.229 2.965 0.107 6.987 CL2 CPD 44
CPD F1 F1 F 0 1 N N N 10.762 2.247 -9.919 4.314 2.022 -8.086 F1 CPD 45
CPD F2 F2 F 0 1 N N N 11.255 0.748 -8.367 2.742 0.598 -8.934 F2 CPD 46
CPD F3 F3 F 0 1 N N N 12.317 0.756 -10.312 2.116 2.642 -8.127 F3 CPD 47
CPD P P P 0 1 N N S 7.279 -3.807 -16.291 -0.757 -0.557 -0.257 P CPD 48
CPD H1 H1 H 0 1 N N N 2.118 0.018 -17.801 3.748 0.569 4.768 H1 CPD 49
CPD H3 H3 H 0 1 N N N 7.042 0.144 -17.922 0.328 -2.145 3.327 H3 CPD 50
CPD H41 1H4 H 0 1 N N N 6.330 -2.824 -18.464 2.039 -2.188 0.800 H41 CPD 51
CPD H42 2H4 H 0 1 N N N 5.268 -1.978 -19.362 1.898 -3.512 1.981 H42 CPD 52
CPD H5 H5 H 0 1 N N N 5.376 -1.774 -16.165 0.918 0.001 1.238 H5 CPD 53
CPD H7 H7 H 0 1 N N N 8.583 0.199 -15.705 -2.029 -0.394 3.391 H7 CPD 54
CPD H8 H8 H 0 1 N N N 4.408 -0.735 -14.540 1.698 1.612 2.881 H8 CPD 55
CPD H9 H9 H 0 1 N N N 8.747 1.822 -13.802 -2.663 1.226 5.133 H9 CPD 56
CPD H10 H10 H 0 1 N N N 4.577 0.867 -12.656 1.062 3.236 4.619 H10 CPD 57
CPD H121 1H12 H 0 0 N N N 6.876 -5.120 -14.217 1.595 -1.103 -0.320 H121 CPD 58
CPD H122 2H12 H 0 0 N N N 5.874 -3.741 -14.239 0.595 -2.437 -0.943 H122 CPD 59
CPD H14 H14 H 0 1 N N N 9.710 -3.909 -14.686 2.305 0.681 -1.751 H14 CPD 60
CPD H15 H15 H 0 1 N N N 6.210 -2.606 -12.302 -0.327 -2.335 -3.219 H15 CPD 61
CPD H16 H16 H 0 1 N N N 11.179 -2.444 -13.326 2.687 1.474 -4.049 H16 CPD 62
CPD H17 H17 H 0 1 N N N 7.676 -1.142 -10.942 0.042 -1.546 -5.520 H17 CPD 63
CPD H221 1H22 H 0 0 N N N 2.916 -5.813 -15.166 -4.183 -4.472 -0.669 H221 CPD 64
CPD H222 2H22 H 0 0 N N N 3.415 -7.325 -15.752 -3.051 -4.817 -1.999 H222 CPD 65
CPD H231 1H23 H 0 0 N N N 0.962 -7.099 -15.970 -5.360 -5.494 -2.597 H231 CPD 66
CPD H232 2H23 H 0 0 N N N 1.200 -5.642 -17.070 -5.922 -3.829 -2.316 H232 CPD 67
CPD H233 3H23 H 0 0 N N N 1.699 -7.154 -17.656 -4.790 -4.174 -3.646 H233 CPD 68
CPD H241 1H24 H 0 0 N N N 6.119 -6.658 -16.704 -2.114 0.611 -2.343 H241 CPD 69
CPD H242 2H24 H 0 0 N N N 7.665 -5.927 -16.538 -3.258 -0.681 -2.776 H242 CPD 70
CPD H251 1H25 H 0 0 N N N 6.284 -6.587 -19.256 -4.591 -0.182 -0.746 H251 CPD 71
CPD H252 2H25 H 0 0 N N N 7.580 -5.595 -19.246 -3.447 1.110 -0.313 H252 CPD 72
CPD H261 1H26 H 0 0 N N N 9.084 -7.262 -18.407 -3.969 2.282 -2.434 H261 CPD 73
CPD H262 2H26 H 0 0 N N N 8.049 -7.621 -17.079 -5.113 0.989 -2.867 H262 CPD 74
CPD H271 1H27 H 0 0 N N N 8.069 -9.935 -20.548 -7.193 3.645 -1.648 H271 CPD 75
CPD H272 2H27 H 0 0 N N N 7.942 -8.099 -20.756 -5.686 3.847 -2.574 H272 CPD 76
CPD H273 3H27 H 0 0 N N N 9.379 -8.700 -20.115 -6.829 2.553 -3.007 H273 CPD 77
CPD H281 1H28 H 0 0 N N N 6.195 -10.335 -18.822 -7.489 1.620 -0.309 H281 CPD 78
CPD H282 2H28 H 0 0 N N N 6.304 -9.343 -17.270 -7.098 0.720 -1.794 H282 CPD 79
CPD H283 3H28 H 0 0 N N N 5.621 -8.593 -18.624 -6.190 0.403 -0.296 H283 CPD 80
CPD HN1 HN1 H 0 1 N N N 4.143 -0.887 -17.900 3.033 -1.135 2.807 HN1 CPD 81
CPD HN3 HN3 H 0 1 N N N 11.426 -0.647 -11.540 0.890 0.410 -6.894 HN3 CPD 82
CPD HN5 HN5 H 0 1 N N N 3.963 -5.860 -18.140 -4.000 -2.174 -2.300 HN5 CPD 83
CPD HO2 HO2 H 0 1 N N N 7.280 -2.011 -20.298 0.498 -3.769 0.185 HO2 CPD 84
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
CPD C1 C2 SING N N 1
CPD C1 CL1 SING N N 2
CPD C1 CL2 SING N N 3
CPD C1 H1 SING N N 4
CPD C2 N1 SING N N 5
CPD C2 O1 DOUB N N 6
CPD C3 C4 SING N N 7
CPD C3 C5 SING N N 8
CPD C3 N1 SING N N 9
CPD C3 H3 SING N N 10
CPD C4 O2 SING N N 11
CPD C4 H41 SING N N 12
CPD C4 H42 SING N N 13
CPD C5 C6 SING N N 14
CPD C5 O5 SING N N 15
CPD C5 H5 SING N N 16
CPD C6 C7 DOUB Y N 17
CPD C6 C8 SING Y N 18
CPD C7 C9 SING Y N 19
CPD C7 H7 SING N N 20
CPD C8 C10 DOUB Y N 21
CPD C8 H8 SING N N 22
CPD C9 C11 DOUB Y N 23
CPD C9 H9 SING N N 24
CPD C10 C11 SING Y N 25
CPD C10 H10 SING N N 26
CPD C11 N2 SING N N 27
CPD C12 C13 SING N N 28
CPD C12 P SING N N 29
CPD C12 H121 SING N N 30
CPD C12 H122 SING N N 31
CPD C13 C14 DOUB Y N 32
CPD C13 C15 SING Y N 33
CPD C14 C16 SING Y N 34
CPD C14 H14 SING N N 35
CPD C15 C17 DOUB Y N 36
CPD C15 H15 SING N N 37
CPD C16 C18 DOUB Y N 38
CPD C16 H16 SING N N 39
CPD C17 C18 SING Y N 40
CPD C17 H17 SING N N 41
CPD C18 N3 SING N N 42
CPD C19 C20 SING N N 43
CPD C19 N3 SING N N 44
CPD C19 O8 DOUB N N 45
CPD C20 F1 SING N N 46
CPD C20 F2 SING N N 47
CPD C20 F3 SING N N 48
CPD C21 N4 SING N N 49
CPD C21 N5 SING N N 50
CPD C21 O7 DOUB N N 51
CPD C22 C23 SING N N 52
CPD C22 N5 SING N N 53
CPD C22 H221 SING N N 54
CPD C22 H222 SING N N 55
CPD C23 H231 SING N N 56
CPD C23 H232 SING N N 57
CPD C23 H233 SING N N 58
CPD C24 C25 SING N N 59
CPD C24 N4 SING N N 60
CPD C24 H241 SING N N 61
CPD C24 H242 SING N N 62
CPD C25 C26 SING N N 63
CPD C25 H251 SING N N 64
CPD C25 H252 SING N N 65
CPD C26 N6 SING N N 66
CPD C26 H261 SING N N 67
CPD C26 H262 SING N N 68
CPD C27 N6 SING N N 69
CPD C27 H271 SING N N 70
CPD C27 H272 SING N N 71
CPD C27 H273 SING N N 72
CPD C28 N6 SING N N 73
CPD C28 H281 SING N N 74
CPD C28 H282 SING N N 75
CPD C28 H283 SING N N 76
CPD N1 HN1 SING N N 77
CPD N2 O3 SING N N 78
CPD N2 O4 DOUB N N 79
CPD N3 HN3 SING N N 80
CPD N4 P SING N N 81
CPD N5 HN5 SING N N 82
CPD O2 HO2 SING N N 83
CPD O5 P SING N N 84
CPD O6 P DOUB N N 85
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
CPD SMILES ACDLabs 10.04 "FC(F)(F)C(=O)Nc1ccc(cc1)CP(=O)(OC(c2ccc(cc2)[N+]([O-])=O)C(NC(=O)C(Cl)Cl)CO)N(C(=O)NCC)CCCN(C)C"
CPD SMILES_CANONICAL CACTVS 3.341 "CCNC(=O)N(CCCN(C)C)[P@](=O)(Cc1ccc(NC(=O)C(F)(F)F)cc1)O[C@H]([C@@H](CO)NC(=O)C(Cl)Cl)c2ccc(cc2)[N+]([O-])=O"
CPD SMILES CACTVS 3.341 "CCNC(=O)N(CCCN(C)C)[P](=O)(Cc1ccc(NC(=O)C(F)(F)F)cc1)O[CH]([CH](CO)NC(=O)C(Cl)Cl)c2ccc(cc2)[N+]([O-])=O"
CPD SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CCNC(=O)N(CCCN(C)C)[P@](=O)(Cc1ccc(cc1)NC(=O)C(F)(F)F)O[C@@H](c2ccc(cc2)[N+](=O)[O-])[C@@H](CO)NC(=O)C(Cl)Cl"
CPD SMILES "OpenEye OEToolkits" 1.5.0 "CCNC(=O)N(CCCN(C)C)P(=O)(Cc1ccc(cc1)NC(=O)C(F)(F)F)OC(c2ccc(cc2)[N+](=O)[O-])C(CO)NC(=O)C(Cl)Cl"
CPD InChI InChI 1.03
"InChI=1S/C28H36Cl2F3N6O8P/c1-4-34-27(43)38(15-5-14-37(2)3)48(46,17-18-6-10-20(11-7-18)35-26(42)28(31,32)33)47-23(22(16-40)36-25(41)24(29)30)19-8-12-21(13-9-19)39(44)45/h6-13,22-24,40H,4-5,14-17H2,1-3H3,(H,34,43)(H,35,42)(H,36,41)/t22-,23+,48+/m1/s1"
CPD InChIKey InChI 1.03 SITLNJAUKLVJOA-CTQJRONWSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
CPD "SYSTEMATIC NAME" ACDLabs 10.04 "(1S,2R)-2-[(dichloroacetyl)amino]-3-hydroxy-1-(4-nitrophenyl)propyl (S)-N-[3-(dimethylamino)propyl]-N-(ethylcarbamoyl)-P-{4-[(trifluoroacetyl)amino]benzyl}phosphonamidoate"
CPD "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "N-[4-[[[(1S,2R)-2-(2,2-dichloroethanoylamino)-3-hydroxy-1-(4-nitrophenyl)propoxy]-(3-dimethylaminopropyl-(ethylcarbamoyl)amino)phosphoryl]methyl]phenyl]-2,2,2-trifluoro-ethanamide"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
CPD "Create component" 1999-07-08 EBI
CPD "Modify descriptor" 2011-06-04 RCSB
#