data_CRK # _chem_comp.id CRK _chem_comp.name "4-{(Z)-[2-[3-(METHYLSULFANYL)PROPANOYL]-5-OXO-1-(2-OXOETHYL)-1,5-DIHYDRO-4H-IMIDAZOL-4-YLIDENE]METHYL}BENZENOLATE" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C16 H15 N2 O5 S" _chem_comp.mon_nstd_parent_comp_id "MET, TYR, GLY" _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -1 _chem_comp.pdbx_initial_date 2004-10-11 _chem_comp.pdbx_modified_date 2024-06-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 347.366 _chem_comp.one_letter_code MYG _chem_comp.three_letter_code CRK _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1XMZ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal CRK C1 C1 C 0 1 N N N N Y N 49.428 50.445 58.046 -1.031 0.028 0.315 C1 CRK 1 CRK C2 C2 C 0 1 N N N N Y N 49.619 49.614 60.137 1.115 -0.457 0.510 C2 CRK 2 CRK C3 C3 C 0 1 N N N N Y Y 52.729 50.115 58.582 -0.541 -3.205 -0.233 C3 CRK 3 CRK CA1 CA1 C 0 1 N N N N Y N 49.901 50.743 56.713 -2.490 -0.134 0.321 CA1 CRK 4 CRK CA2 CA2 C 0 1 N N N N Y N 48.334 50.283 59.847 0.924 0.949 0.111 CA2 CRK 5 CRK CA3 CA3 C 0 1 N N N N Y N 51.579 49.151 58.779 -0.463 -2.347 1.003 CA3 CRK 6 CRK CB CB C 0 1 N N N N N N 48.978 51.501 55.760 -3.378 1.033 -0.027 CB CRK 7 CRK CB2 CB2 C 0 1 N N N N N N 47.168 50.363 60.532 1.916 1.889 -0.128 CB2 CRK 8 CRK CD2 CD2 C 0 1 Y N N N N N 47.471 49.314 62.657 3.647 0.277 -0.753 CD2 CRK 9 CRK CD1 CD1 C 0 1 Y N N N N N 45.201 49.937 61.996 4.262 2.312 0.422 CD1 CRK 10 CRK CE CE C 0 1 N N N N N N 49.782 53.730 52.857 -7.581 1.305 -0.214 CE CRK 11 CRK CE2 CE2 C 0 1 Y N N N N N 46.979 48.633 63.751 4.959 -0.099 -0.774 CE2 CRK 12 CRK CE1 CE1 C 0 1 Y N N N N N 44.698 49.289 63.087 5.571 1.924 0.394 CE1 CRK 13 CRK CG CG C 0 1 N N N N N N 49.667 52.835 55.427 -4.844 0.600 0.055 CG CRK 14 CRK CG2 CG2 C 0 1 Y N N N N N 46.587 49.953 61.702 3.277 1.492 -0.153 CG2 CRK 15 CRK CZ CZ C 0 1 Y N N N N N 45.557 48.600 64.046 5.930 0.719 -0.203 CZ CRK 16 CRK N2 N2 N 0 1 N N N N Y N 48.246 50.801 58.545 -0.407 1.139 0.023 N2 CRK 17 CRK N3 N3 N 0 1 N N N N Y N 50.302 49.773 58.910 -0.130 -0.972 0.622 N3 CRK 18 CRK O1 O1 O 0 1 N N N N N N 50.987 50.262 56.269 -2.980 -1.206 0.606 O1 CRK 19 CRK O2 O2 O 0 1 N N N N Y N 50.111 49.039 61.092 2.171 -1.033 0.699 O2 CRK 20 CRK O3 O3 O 0 1 N N N N Y Y 53.823 49.669 58.262 -0.339 -2.719 -1.320 O3 CRK 21 CRK OH OH O -1 1 N N N N N N 45.066 47.912 64.984 7.232 0.339 -0.227 OH CRK 22 CRK SD SD S 0 1 N N N N N N 48.682 53.841 54.286 -5.913 2.004 -0.364 SD CRK 23 CRK HA31 HA31 H 0 0 N N N N Y N 51.545 48.475 57.912 -1.426 -2.359 1.515 HA31 CRK 24 CRK HA32 HA32 H 0 0 N N N N Y N 51.772 48.567 59.691 0.307 -2.737 1.668 HA32 CRK 25 CRK HB1 HB1 H 0 1 N N N N N N 48.823 50.917 54.841 -3.201 1.847 0.676 HB1 CRK 26 CRK HB2A HB2A H 0 0 N N N N N N 48.008 51.688 56.244 -3.155 1.370 -1.039 HB2A CRK 27 CRK HB2 HB2 H 0 1 N N N N N N 46.458 50.946 59.964 1.652 2.923 -0.294 HB2 CRK 28 CRK HD2 HD2 H 0 1 N N N N N N 48.539 49.373 62.508 2.895 -0.356 -1.200 HD2 CRK 29 CRK HD1 HD1 H 0 1 N N N N N N 44.521 50.454 61.336 3.985 3.248 0.885 HD1 CRK 30 CRK HE1A HE1A H 0 0 N N N N N N 49.352 54.297 52.018 -7.735 0.950 0.805 HE1A CRK 31 CRK HE2A HE2A H 0 0 N N N N N N 50.765 54.150 53.118 -8.318 2.073 -0.447 HE2A CRK 32 CRK HE3 HE3 H 0 1 N N N N N N 49.899 52.676 52.566 -7.690 0.473 -0.909 HE3 CRK 33 CRK HE2 HE2 H 0 1 N N N N N N 47.666 48.113 64.402 5.244 -1.033 -1.235 HE2 CRK 34 CRK HE1 HE1 H 0 1 N N N N N N 43.630 49.286 63.246 6.329 2.554 0.835 HE1 CRK 35 CRK HG1 HG1 H 0 1 N N N N N N 49.817 53.399 56.359 -5.021 -0.215 -0.647 HG1 CRK 36 CRK HG2 HG2 H 0 1 N N N N N N 50.642 52.625 54.964 -5.067 0.262 1.067 HG2 CRK 37 CRK OXT OXT O 0 1 N Y N N Y Y ? ? ? -0.836 -4.511 -0.126 O4 CRK 38 CRK HXT HXT H 0 1 N Y N N Y Y ? ? ? -0.874 -5.021 -0.947 H2 CRK 39 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal CRK C1 CA1 SING N N 1 CRK C1 N2 DOUB N N 2 CRK C1 N3 SING N N 3 CRK C2 CA2 SING N N 4 CRK C2 N3 SING N N 5 CRK C2 O2 DOUB N N 6 CRK C3 CA3 SING N N 7 CRK C3 O3 DOUB N N 8 CRK CA1 CB SING N N 9 CRK CA1 O1 DOUB N N 10 CRK CA2 CB2 DOUB N E 11 CRK CA2 N2 SING N N 12 CRK CA3 N3 SING N N 13 CRK CA3 HA31 SING N N 14 CRK CA3 HA32 SING N N 15 CRK CB CG SING N N 16 CRK CB HB1 SING N N 17 CRK CB HB2A SING N N 18 CRK CB2 CG2 SING N N 19 CRK CB2 HB2 SING N N 20 CRK CD2 CE2 DOUB Y N 21 CRK CD2 CG2 SING Y N 22 CRK CD2 HD2 SING N N 23 CRK CD1 CE1 SING Y N 24 CRK CD1 CG2 DOUB Y N 25 CRK CD1 HD1 SING N N 26 CRK CE SD SING N N 27 CRK CE HE1A SING N N 28 CRK CE HE2A SING N N 29 CRK CE HE3 SING N N 30 CRK CE2 CZ SING Y N 31 CRK CE2 HE2 SING N N 32 CRK CE1 CZ DOUB Y N 33 CRK CE1 HE1 SING N N 34 CRK CG SD SING N N 35 CRK CG HG1 SING N N 36 CRK CG HG2 SING N N 37 CRK CZ OH SING N N 38 CRK C3 OXT SING N N 39 CRK OXT HXT SING N N 40 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor CRK SMILES ACDLabs 10.04 "O=C(C1=N/C(C(=O)N1CC=O)=C/c2ccc([O-])cc2)CCSC" CRK InChI InChI 1.06 "InChI=1S/C16H16N2O5S/c1-24-7-6-13(20)15-17-12(16(23)18(15)9-14(21)22)8-10-2-4-11(19)5-3-10/h2-5,8,19H,6-7,9H2,1H3,(H,21,22)/p-1/b12-8+" CRK InChIKey InChI 1.06 RFUOIMPCLYYIPW-XYOKQWHBSA-M CRK SMILES_CANONICAL CACTVS 3.385 "CSCCC(=O)C1=NC(=C/c2ccc([O-])cc2)/C(=O)N1CC(O)=O" CRK SMILES CACTVS 3.385 "CSCCC(=O)C1=NC(=Cc2ccc([O-])cc2)C(=O)N1CC(O)=O" CRK SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CSCCC(=O)C1=N/C(=C/c2ccc(cc2)[O-])/C(=O)N1CC(=O)O" CRK SMILES "OpenEye OEToolkits" 2.0.7 "CSCCC(=O)C1=NC(=Cc2ccc(cc2)[O-])C(=O)N1CC(=O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier CRK "SYSTEMATIC NAME" ACDLabs 10.04 "4-[(E)-{2-[3-(methylsulfanyl)propanoyl]-5-oxo-1-(2-oxoethyl)-1,5-dihydro-4H-imidazol-4-ylidene}methyl]phenolate" CRK "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "4-[(~{E})-[1-(2-hydroxy-2-oxoethyl)-2-(3-methylsulfanylpropanoyl)-5-oxidanylidene-imidazol-4-ylidene]methyl]phenolate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site CRK "Create component" 2004-10-11 RCSB CRK "Modify descriptor" 2011-06-04 RCSB CRK "Modify descriptor" 2012-01-05 RCSB CRK "Modify coordinates" 2012-01-05 RCSB CRK "Modify backbone" 2023-11-03 PDBE CRK "Other modification" 2024-06-28 PDBE #