data_CSG # _chem_comp.id CSG _chem_comp.name "2'-amino-2'-deoxycytidine 5'-(tetrahydrogen triphosphate)" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C9 H17 N4 O13 P3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "2'-amino-2'-deoxycytidine-5'-triphosphate" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2009-04-23 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 482.172 _chem_comp.one_letter_code ? _chem_comp.three_letter_code CSG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3H5X _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal CSG C5 C5 C 0 1 N N N 29.702 -1.469 -2.944 -5.997 2.716 1.028 C5 CSG 1 CSG C4 C4 C 0 1 N N N 28.516 -2.238 -2.749 -5.698 3.190 -0.266 C4 CSG 2 CSG N4 N4 N 0 1 N N N 28.557 -3.559 -2.559 -6.209 4.392 -0.697 N4 CSG 3 CSG N3 N3 N 0 1 N N N 27.330 -1.658 -2.738 -4.920 2.471 -1.064 N3 CSG 4 CSG C2 C2 C 0 1 N N N 27.205 -0.324 -2.921 -4.419 1.306 -0.657 C2 CSG 5 CSG O2 O2 O 0 1 N N N 26.111 0.252 -2.924 -3.705 0.664 -1.410 O2 CSG 6 CSG C6 C6 C 0 1 N N N 29.561 -0.143 -3.119 -5.476 1.532 1.429 C6 CSG 7 CSG N1 N1 N 0 1 N N N 28.335 0.455 -3.118 -4.686 0.827 0.572 N1 CSG 8 CSG "C1'" "C1'" C 0 1 N N R 28.103 1.891 -3.304 -4.116 -0.456 0.993 "C1'" CSG 9 CSG "O4'" "O4'" O 0 1 N N N 29.232 2.542 -3.867 -2.701 -0.500 0.711 "O4'" CSG 10 CSG "C2'" "C2'" C 0 1 N N R 27.766 2.593 -1.991 -4.691 -1.615 0.140 "C2'" CSG 11 CSG "N2'" "N2'" N 0 1 N N N 26.710 3.550 -2.277 -5.955 -2.106 0.707 "N2'" CSG 12 CSG "C3'" "C3'" C 0 1 N N S 29.103 3.276 -1.686 -3.580 -2.686 0.258 "C3'" CSG 13 CSG "O3'" "O3'" O 0 1 N N N 29.089 4.324 -0.708 -3.911 -3.642 1.267 "O3'" CSG 14 CSG "C4'" "C4'" C 0 1 N N R 29.541 3.718 -3.068 -2.326 -1.887 0.662 "C4'" CSG 15 CSG "C5'" "C5'" C 0 1 N N N 31.021 3.835 -3.155 -1.221 -2.091 -0.376 "C5'" CSG 16 CSG "O5'" "O5'" O 0 1 N N N 31.458 2.558 -2.722 -0.032 -1.428 0.057 "O5'" CSG 17 CSG PA PA P 0 1 N N S 32.987 2.233 -2.495 1.335 -1.434 -0.794 PA CSG 18 CSG O1A O1A O 0 1 N N N 33.838 3.292 -3.176 1.068 -0.930 -2.160 O1A CSG 19 CSG O2A O2A O 0 1 N N N 33.176 0.793 -2.938 1.908 -2.936 -0.879 O2A CSG 20 CSG O3A O3A O 0 1 N N N 33.087 2.354 -0.874 2.419 -0.486 -0.075 O3A CSG 21 CSG PB PB P 0 1 N N S 32.782 3.604 0.124 3.763 0.251 -0.568 PB CSG 22 CSG O1B O1B O 0 1 N N N 31.390 3.451 0.680 3.376 1.602 -1.355 O1B CSG 23 CSG O2B O2B O 0 1 N N N 33.093 4.934 -0.534 4.515 -0.648 -1.471 O2B CSG 24 CSG O3B O3B O 0 1 N N N 33.807 3.440 1.351 4.674 0.616 0.708 O3B CSG 25 CSG PG PG P 0 1 N N N 35.414 3.406 1.227 6.211 1.057 0.895 PG CSG 26 CSG O1G O1G O 0 1 N N N 35.962 4.317 2.304 6.422 1.655 2.375 O1G CSG 27 CSG O2G O2G O 0 1 N N N 35.885 1.980 1.412 7.166 -0.223 0.693 O2G CSG 28 CSG O3G O3G O 0 1 N N N 35.860 3.888 -0.141 6.554 2.091 -0.108 O3G CSG 29 CSG H5 H5 H 0 1 N N N 30.677 -1.934 -2.951 -6.629 3.289 1.690 H5 CSG 30 CSG HN4 HN4 H 0 1 N N N 29.506 -3.873 -2.585 -6.778 4.916 -0.111 HN4 CSG 31 CSG HN4A HN4A H 0 0 N N N 27.760 -4.145 -2.413 -6.002 4.716 -1.587 HN4A CSG 32 CSG H6 H6 H 0 1 N N N 30.442 0.465 -3.264 -5.690 1.147 2.415 H6 CSG 33 CSG "H1'" "H1'" H 0 1 N N N 27.248 1.962 -3.993 -4.305 -0.628 2.053 "H1'" CSG 34 CSG "H2'" "H2'" H 0 1 N N N 27.410 1.968 -1.159 -4.826 -1.306 -0.896 "H2'" CSG 35 CSG "HN2'" "HN2'" H 0 0 N N N 26.221 3.770 -1.433 -6.330 -2.861 0.153 "HN2'" CSG 36 CSG HN2A HN2A H 0 0 N N N 27.110 4.384 -2.657 -5.834 -2.388 1.668 HN2A CSG 37 CSG "H3'" "H3'" H 0 1 N N N 29.803 2.595 -1.180 -3.425 -3.183 -0.700 "H3'" CSG 38 CSG "HO3'" "HO3'" H 0 0 N N N 29.086 3.945 0.163 -3.249 -4.337 1.384 "HO3'" CSG 39 CSG "H4'" "H4'" H 0 1 N N N 29.078 4.675 -3.353 -1.980 -2.212 1.643 "H4'" CSG 40 CSG "H5'" "H5'" H 0 1 N N N 31.354 4.056 -4.180 -1.022 -3.157 -0.490 "H5'" CSG 41 CSG "H5'A" "H5'A" H 0 0 N N N 31.428 4.661 -2.553 -1.541 -1.676 -1.332 "H5'A" CSG 42 CSG HO2A HO2A H 0 0 N N N 33.215 0.756 -3.886 2.106 -3.331 -0.019 HO2A CSG 43 CSG HO1B HO1B H 0 0 N N N 31.429 3.419 1.629 2.881 2.239 -0.823 HO1B CSG 44 CSG HO1G HO1G H 0 0 N N N 36.077 3.824 3.108 7.327 1.942 2.558 HO1G CSG 45 CSG HO2G HO2G H 0 0 N N N 35.984 1.566 0.563 6.997 -0.942 1.318 HO2G CSG 46 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal CSG C6 C5 DOUB N N 1 CSG C5 C4 SING N N 2 CSG C5 H5 SING N N 3 CSG C4 N3 DOUB N N 4 CSG C4 N4 SING N N 5 CSG N4 HN4 SING N N 6 CSG N4 HN4A SING N N 7 CSG C2 N3 SING N N 8 CSG N1 C2 SING N N 9 CSG O2 C2 DOUB N N 10 CSG C6 N1 SING N N 11 CSG C6 H6 SING N N 12 CSG "C1'" N1 SING N N 13 CSG "O4'" "C1'" SING N N 14 CSG "C1'" "C2'" SING N N 15 CSG "C1'" "H1'" SING N N 16 CSG "O4'" "C4'" SING N N 17 CSG "N2'" "C2'" SING N N 18 CSG "C2'" "C3'" SING N N 19 CSG "C2'" "H2'" SING N N 20 CSG "N2'" "HN2'" SING N N 21 CSG "N2'" HN2A SING N N 22 CSG "C4'" "C3'" SING N N 23 CSG "C3'" "O3'" SING N N 24 CSG "C3'" "H3'" SING N N 25 CSG "O3'" "HO3'" SING N N 26 CSG "C5'" "C4'" SING N N 27 CSG "C4'" "H4'" SING N N 28 CSG "C5'" "O5'" SING N N 29 CSG "C5'" "H5'" SING N N 30 CSG "C5'" "H5'A" SING N N 31 CSG "O5'" PA SING N N 32 CSG O1A PA DOUB N N 33 CSG O2A PA SING N N 34 CSG PA O3A SING N N 35 CSG O2A HO2A SING N N 36 CSG O3A PB SING N N 37 CSG O2B PB DOUB N N 38 CSG PB O1B SING N N 39 CSG PB O3B SING N N 40 CSG O1B HO1B SING N N 41 CSG PG O3B SING N N 42 CSG O3G PG DOUB N N 43 CSG PG O2G SING N N 44 CSG PG O1G SING N N 45 CSG O1G HO1G SING N N 46 CSG O2G HO2G SING N N 47 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor CSG SMILES ACDLabs 10.04 "O=P(O)(O)OP(=O)(O)OP(=O)(O)OCC2OC(N1C(=O)N=C(N)C=C1)C(N)C2O" CSG SMILES_CANONICAL CACTVS 3.341 "N[C@@H]1[C@H](O)[C@@H](CO[P@@](O)(=O)O[P@](O)(=O)O[P](O)(O)=O)O[C@H]1N2C=CC(=NC2=O)N" CSG SMILES CACTVS 3.341 "N[CH]1[CH](O)[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)O[CH]1N2C=CC(=NC2=O)N" CSG SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1=CN(C(=O)N=C1N)[C@H]2[C@@H]([C@@H]([C@H](O2)CO[P@](=O)(O)O[P@@](=O)(O)OP(=O)(O)O)O)N" CSG SMILES "OpenEye OEToolkits" 1.5.0 "C1=CN(C(=O)N=C1N)C2C(C(C(O2)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)N" CSG InChI InChI 1.03 "InChI=1S/C9H17N4O13P3/c10-5-1-2-13(9(15)12-5)8-6(11)7(14)4(24-8)3-23-28(19,20)26-29(21,22)25-27(16,17)18/h1-2,4,6-8,14H,3,11H2,(H,19,20)(H,21,22)(H2,10,12,15)(H2,16,17,18)/t4-,6-,7-,8-/m1/s1" CSG InChIKey InChI 1.03 WNVZQYHBHSLUHJ-XVFCMESISA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier CSG "SYSTEMATIC NAME" ACDLabs 10.04 "2'-amino-2'-deoxycytidine 5'-(tetrahydrogen triphosphate)" CSG "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,4R,5R)-4-amino-5-(4-amino-2-oxo-pyrimidin-1-yl)-3-hydroxy-oxolan-2-yl]methyl (hydroxy-phosphonooxy-phosphoryl) hydrogen phosphate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site CSG "Create component" 2009-04-23 RCSB CSG "Modify descriptor" 2011-06-04 RCSB CSG "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id CSG _pdbx_chem_comp_synonyms.name "2'-amino-2'-deoxycytidine-5'-triphosphate" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##