data_CTD # _chem_comp.id CTD _chem_comp.name 3-DEAZACYTIDINE _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H14 N2 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 242.229 _chem_comp.one_letter_code ? _chem_comp.three_letter_code CTD _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1ALN _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal CTD N1 N1 N 0 1 N N N 35.234 48.795 9.511 -0.055 -0.153 1.019 N1 CTD 1 CTD C2 C2 C 0 1 N N N 36.089 47.970 8.832 -0.438 -1.019 1.975 C2 CTD 2 CTD C3 C3 C 0 1 N N N 35.648 46.637 8.615 -0.163 -0.749 3.319 C3 CTD 3 CTD C4 C4 C 0 1 N N N 34.389 46.278 8.902 0.505 0.418 3.649 C4 CTD 4 CTD C5 C5 C 0 1 N N N 33.542 47.193 9.601 0.883 1.302 2.616 C5 CTD 5 CTD C6 C6 C 0 1 N N N 33.979 48.428 9.900 0.600 0.995 1.333 C6 CTD 6 CTD O2 O2 O 0 1 N N N 37.145 48.357 8.329 -1.026 -2.044 1.668 O2 CTD 7 CTD N4 N4 N 0 1 N N N 33.946 45.083 8.542 0.791 0.715 4.969 N4 CTD 8 CTD "C1'" C1* C 0 1 N N R 35.754 50.283 9.862 -0.351 -0.452 -0.383 "C1'" CTD 9 CTD "C2'" C2* C 0 1 N N R 35.661 51.640 9.271 -1.206 0.673 -1.005 "C2'" CTD 10 CTD "O2'" O2* O 0 1 N N N 36.553 51.751 8.130 -2.589 0.313 -1.015 "O2'" CTD 11 CTD "C3'" C3* C 0 1 N N S 35.989 52.454 10.432 -0.668 0.797 -2.450 "C3'" CTD 12 CTD "C4'" C4* C 0 1 N N R 35.504 51.602 11.604 0.444 -0.271 -2.529 "C4'" CTD 13 CTD "O4'" O4* O 0 1 N N N 35.707 50.234 11.289 0.864 -0.467 -1.161 "O4'" CTD 14 CTD "O3'" O3* O 0 1 N N N 37.377 52.621 10.545 -1.701 0.515 -3.396 "O3'" CTD 15 CTD "C5'" C5* C 0 1 N N N 34.147 51.898 12.094 1.612 0.234 -3.378 "C5'" CTD 16 CTD "O5'" O5* O 0 1 N N N 33.248 51.652 11.021 2.658 -0.738 -3.377 "O5'" CTD 17 CTD H3 H3 H 0 1 N N N 36.307 45.851 8.208 -0.467 -1.442 4.090 H3 CTD 18 CTD H5 H5 H 0 1 N N N 32.517 46.937 9.920 1.405 2.218 2.851 H5 CTD 19 CTD H6 H6 H 0 1 N N N 33.323 49.123 10.451 0.895 1.672 0.546 H6 CTD 20 CTD HN41 1HN4 H 0 0 N N N 32.987 44.809 8.760 1.259 1.535 5.191 HN41 CTD 21 CTD HN42 2HN4 H 0 0 N N N 34.577 44.376 8.919 0.520 0.105 5.673 HN42 CTD 22 CTD "H1'" H1* H 0 1 N N N 36.573 50.362 9.110 -0.866 -1.409 -0.466 "H1'" CTD 23 CTD "H2'" H2* H 0 1 N N N 34.684 51.942 8.826 -1.059 1.607 -0.461 "H2'" CTD 24 CTD "HO2'" *HO2 H 0 0 N N N 36.493 52.620 7.751 -3.060 1.026 -1.468 "HO2'" CTD 25 CTD "H3'" H3* H 0 1 N N N 35.533 53.470 10.381 -0.256 1.791 -2.621 "H3'" CTD 26 CTD "H4'" H4* H 0 1 N N N 36.124 51.879 12.487 0.050 -1.199 -2.942 "H4'" CTD 27 CTD "HO3'" *HO3 H 0 0 N N N 37.591 53.152 11.302 -1.294 0.546 -4.272 "HO3'" CTD 28 CTD "H5'1" 1H5* H 0 0 N N N 33.885 51.335 13.020 1.273 0.402 -4.400 "H5'1" CTD 29 CTD "H5'2" 2H5* H 0 0 N N N 34.050 52.925 12.517 1.986 1.170 -2.961 "H5'2" CTD 30 CTD "HO5'" *HO5 H 0 0 N N N 32.372 51.842 11.337 3.373 -0.381 -3.922 "HO5'" CTD 31 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal CTD N1 C2 SING N N 1 CTD N1 C6 SING N N 2 CTD N1 "C1'" SING N N 3 CTD C2 C3 SING N N 4 CTD C2 O2 DOUB N N 5 CTD C3 C4 DOUB N N 6 CTD C3 H3 SING N N 7 CTD C4 C5 SING N N 8 CTD C4 N4 SING N N 9 CTD C5 C6 DOUB N N 10 CTD C5 H5 SING N N 11 CTD C6 H6 SING N N 12 CTD N4 HN41 SING N N 13 CTD N4 HN42 SING N N 14 CTD "C1'" "C2'" SING N N 15 CTD "C1'" "O4'" SING N N 16 CTD "C1'" "H1'" SING N N 17 CTD "C2'" "O2'" SING N N 18 CTD "C2'" "C3'" SING N N 19 CTD "C2'" "H2'" SING N N 20 CTD "O2'" "HO2'" SING N N 21 CTD "C3'" "C4'" SING N N 22 CTD "C3'" "O3'" SING N N 23 CTD "C3'" "H3'" SING N N 24 CTD "C4'" "O4'" SING N N 25 CTD "C4'" "C5'" SING N N 26 CTD "C4'" "H4'" SING N N 27 CTD "O3'" "HO3'" SING N N 28 CTD "C5'" "O5'" SING N N 29 CTD "C5'" "H5'1" SING N N 30 CTD "C5'" "H5'2" SING N N 31 CTD "O5'" "HO5'" SING N N 32 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor CTD SMILES ACDLabs 10.04 "O=C1C=C(N)C=CN1C2OC(C(O)C2O)CO" CTD SMILES_CANONICAL CACTVS 3.341 "NC1=CC(=O)N(C=C1)[C@@H]2O[C@H](CO)[C@@H](O)[C@H]2O" CTD SMILES CACTVS 3.341 "NC1=CC(=O)N(C=C1)[CH]2O[CH](CO)[CH](O)[CH]2O" CTD SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1=CN(C(=O)C=C1N)[C@H]2[C@@H]([C@@H]([C@H](O2)CO)O)O" CTD SMILES "OpenEye OEToolkits" 1.5.0 "C1=CN(C(=O)C=C1N)C2C(C(C(O2)CO)O)O" CTD InChI InChI 1.03 "InChI=1S/C10H14N2O5/c11-5-1-2-12(7(14)3-5)10-9(16)8(15)6(4-13)17-10/h1-3,6,8-10,13,15-16H,4,11H2/t6-,8-,9-,10-/m1/s1" CTD InChIKey InChI 1.03 OGADSZTVCUXSOK-PEBGCTIMSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier CTD "SYSTEMATIC NAME" ACDLabs 10.04 "4-amino-1-beta-D-ribofuranosylpyridin-2(1H)-one" CTD "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "4-amino-1-[(2R,3R,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]pyridin-2-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site CTD "Create component" 1999-07-08 RCSB CTD "Modify descriptor" 2011-06-04 RCSB #