data_CU0 # _chem_comp.id CU0 _chem_comp.name "[(2~{R},3~{S},4~{S})-3,4-bis(oxidanyl)oxolan-2-yl]methyl phosphono hydrogen phosphate" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C5 H12 O10 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2019-05-15 _chem_comp.pdbx_modified_date 2020-05-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 294.090 _chem_comp.one_letter_code ? _chem_comp.three_letter_code CU0 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6K0R _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal CU0 PB P1 P 0 1 N N N -81.376 -18.645 35.818 3.934 0.253 0.380 PB CU0 1 CU0 O1B O1 O 0 1 N N N -80.497 -19.678 35.246 4.462 1.040 1.682 O1B CU0 2 CU0 O2B O2 O 0 1 N N N -80.939 -18.193 37.200 4.628 0.868 -0.936 O2B CU0 3 CU0 O3B O3 O 0 1 N N N -82.806 -19.114 35.910 4.281 -1.181 0.496 O3B CU0 4 CU0 PA P2 P 0 1 N N N -82.393 -16.755 33.851 1.182 -0.408 -0.498 PA CU0 5 CU0 O1A O4 O 0 1 N N N -81.886 -16.877 32.467 1.394 -1.860 -0.302 O1A CU0 6 CU0 O2A O5 O 0 1 N N N -82.645 -15.288 34.202 1.235 -0.066 -2.070 O2A CU0 7 CU0 O3A O6 O 0 1 N N N -81.343 -17.354 34.887 2.336 0.412 0.269 O3A CU0 8 CU0 "O5'" O7 O 0 1 N N N -83.770 -17.563 33.968 -0.256 0.009 0.094 "O5'" CU0 9 CU0 "C5'" C1 C 0 1 N N N -84.888 -17.200 34.810 -1.475 -0.620 -0.308 "C5'" CU0 10 CU0 "C4'" C2 C 0 1 N N R -86.011 -16.630 33.973 -2.647 0.013 0.445 "C4'" CU0 11 CU0 "O4'" O8 O 0 1 N N N -86.466 -15.369 34.517 -2.811 1.380 0.033 "O4'" CU0 12 CU0 "C3'" C3 C 0 1 N N S -85.722 -16.391 32.489 -3.953 -0.729 0.100 "C3'" CU0 13 CU0 "O3'" O9 O 0 1 N N N -86.177 -17.463 31.666 -4.536 -1.289 1.278 "O3'" CU0 14 CU0 "C2'" C4 C 0 1 N N S -86.455 -15.074 32.189 -4.869 0.370 -0.492 "C2'" CU0 15 CU0 "O2'" O10 O 0 1 N N N -87.804 -15.297 31.786 -6.211 0.222 -0.023 "O2'" CU0 16 CU0 "C1'" C5 C 0 1 N N N -86.389 -14.358 33.535 -4.226 1.664 0.068 "C1'" CU0 17 CU0 H1 H1 H 0 1 N N N -81.657 -18.305 37.812 4.443 1.807 -1.076 H1 CU0 18 CU0 H3 H3 H 0 1 N N N -82.425 -14.741 33.457 1.103 0.871 -2.274 H3 CU0 19 CU0 H4 H4 H 0 1 N N N -85.248 -18.094 35.340 -1.617 -0.487 -1.380 H4 CU0 20 CU0 H5 H5 H 0 1 N N N -84.562 -16.446 35.542 -1.428 -1.684 -0.077 H5 CU0 21 CU0 H6 H6 H 0 1 N N N -86.847 -17.343 34.025 -2.466 -0.031 1.519 H6 CU0 22 CU0 H7 H7 H 0 1 N N N -84.641 -16.236 32.355 -3.766 -1.508 -0.639 H7 CU0 23 CU0 H8 H8 H 0 1 N N N -85.699 -18.255 31.884 -5.361 -1.768 1.120 H8 CU0 24 CU0 H9 H9 H 0 1 N N N -85.899 -14.502 31.432 -4.836 0.359 -1.581 H9 CU0 25 CU0 H10 H10 H 0 1 N N N -88.224 -14.463 31.610 -6.823 0.888 -0.366 H10 CU0 26 CU0 H11 H11 H 0 1 N N N -85.442 -13.806 33.628 -4.556 1.845 1.091 H11 CU0 27 CU0 H12 H12 H 0 1 N N N -87.233 -13.660 33.638 -4.463 2.517 -0.569 H12 CU0 28 CU0 H13 H13 H 0 1 N N N -81.008 -20.452 35.042 5.418 0.988 1.812 H13 CU0 29 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal CU0 "O3'" "C3'" SING N N 1 CU0 "O2'" "C2'" SING N N 2 CU0 "C2'" "C3'" SING N N 3 CU0 "C2'" "C1'" SING N N 4 CU0 O1A PA DOUB N N 5 CU0 "C3'" "C4'" SING N N 6 CU0 "C1'" "O4'" SING N N 7 CU0 PA "O5'" SING N N 8 CU0 PA O2A SING N N 9 CU0 PA O3A SING N N 10 CU0 "O5'" "C5'" SING N N 11 CU0 "C4'" "O4'" SING N N 12 CU0 "C4'" "C5'" SING N N 13 CU0 O3A PB SING N N 14 CU0 O1B PB SING N N 15 CU0 PB O3B DOUB N N 16 CU0 PB O2B SING N N 17 CU0 O2B H1 SING N N 18 CU0 O2A H3 SING N N 19 CU0 "C5'" H4 SING N N 20 CU0 "C5'" H5 SING N N 21 CU0 "C4'" H6 SING N N 22 CU0 "C3'" H7 SING N N 23 CU0 "O3'" H8 SING N N 24 CU0 "C2'" H9 SING N N 25 CU0 "O2'" H10 SING N N 26 CU0 "C1'" H11 SING N N 27 CU0 "C1'" H12 SING N N 28 CU0 O1B H13 SING N N 29 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor CU0 InChI InChI 1.03 "InChI=1S/C5H12O10P2/c6-3-1-13-4(5(3)7)2-14-17(11,12)15-16(8,9)10/h3-7H,1-2H2,(H,11,12)(H2,8,9,10)/t3-,4+,5-/m0/s1" CU0 InChIKey InChI 1.03 HNPYBPXXPMVWIY-LMVFSUKVSA-N CU0 SMILES_CANONICAL CACTVS 3.385 "O[C@H]1CO[C@H](CO[P](O)(=O)O[P](O)(O)=O)[C@H]1O" CU0 SMILES CACTVS 3.385 "O[CH]1CO[CH](CO[P](O)(=O)O[P](O)(O)=O)[CH]1O" CU0 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1[C@@H]([C@@H]([C@H](O1)COP(=O)(O)OP(=O)(O)O)O)O" CU0 SMILES "OpenEye OEToolkits" 2.0.7 "C1C(C(C(O1)COP(=O)(O)OP(=O)(O)O)O)O" # _pdbx_chem_comp_identifier.comp_id CU0 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[(2~{R},3~{S},4~{S})-3,4-bis(oxidanyl)oxolan-2-yl]methyl phosphono hydrogen phosphate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site CU0 "Create component" 2019-05-15 PDBJ CU0 "Initial release" 2020-05-06 RCSB ##