data_CVM # _chem_comp.id CVM _chem_comp.name CYMAL-4 _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H40 O11" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "4-CYCLOHEXYLBUTYL 4-O-ALPHA-D-GLUCOPYRANOSYL-BETA-D-GLUCOPYRANOSIDE" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2009-05-11 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 480.546 _chem_comp.one_letter_code ? _chem_comp.three_letter_code CVM _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2WIE _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal CVM C1 C1 C 0 1 N N N -37.025 20.815 3.537 -3.002 0.981 -0.217 C1 CVM 1 CVM C2 C2 C 0 1 N N N -36.676 21.388 4.908 -4.336 1.216 0.494 C2 CVM 2 CVM C3 C3 C 0 1 N N N -36.470 20.242 5.889 -5.443 0.448 -0.233 C3 CVM 3 CVM C4 C4 C 0 1 N N N -35.765 20.653 7.176 -6.777 0.683 0.477 C4 CVM 4 CVM C6 C6 C 0 1 N N N -35.378 19.394 7.944 -7.884 -0.084 -0.249 C6 CVM 5 CVM C7 C7 C 0 1 N N N -36.563 18.878 8.755 -9.236 0.249 0.385 C7 CVM 6 CVM C8 C8 C 0 1 N N N -36.494 19.379 10.194 -10.342 -0.518 -0.342 C8 CVM 7 CVM C9 C9 C 0 1 N N N -35.333 18.703 10.911 -10.081 -2.022 -0.226 C9 CVM 8 CVM C10 C10 C 0 1 N N N -34.171 18.564 9.934 -8.729 -2.355 -0.860 C10 CVM 9 CVM C11 C11 C 0 1 N N N -34.235 19.683 8.903 -7.623 -1.587 -0.133 C11 CVM 10 CVM O12 O12 O 0 1 N N N -35.895 20.877 2.667 -1.968 1.697 0.462 O12 CVM 11 CVM C13 C13 C 0 1 N N R -35.368 19.597 2.302 -0.674 1.545 -0.124 C13 CVM 12 CVM O14 O14 O 0 1 N N N -34.084 19.791 1.705 -0.256 0.183 -0.009 O14 CVM 13 CVM C15 C15 C 0 1 N N R -33.395 18.575 1.384 1.021 -0.086 -0.590 C15 CVM 14 CVM C16 C16 C 0 1 N N S -34.222 17.646 0.495 2.089 0.750 0.120 C16 CVM 15 CVM C17 C17 C 0 1 N N R -35.652 17.497 1.008 1.721 2.233 0.010 C17 CVM 16 CVM C18 C18 C 0 1 N N R -36.254 18.866 1.296 0.326 2.447 0.604 C18 CVM 17 CVM C19 C19 C 0 1 N N N -32.058 18.921 0.728 1.350 -1.572 -0.433 C19 CVM 18 CVM O20 O20 O 0 1 N N N -31.141 17.828 0.855 0.410 -2.349 -1.178 O20 CVM 19 CVM O21 O21 O 0 1 N N N -36.465 16.818 0.043 2.674 3.017 0.732 O21 CVM 20 CVM O22 O22 O 0 1 N N N -37.589 18.694 1.788 -0.058 3.814 0.441 O22 CVM 21 CVM O23 O23 O 0 1 N N N -33.571 16.375 0.442 3.359 0.526 -0.497 O23 CVM 22 CVM C24 C24 C 0 1 N N R -33.918 15.607 -0.712 4.474 0.780 0.360 C24 CVM 23 CVM O25 O25 O 0 1 N N N -34.242 16.516 -1.776 4.570 -0.258 1.337 O25 CVM 24 CVM C26 C26 C 0 1 N N R -33.862 16.145 -3.101 4.726 -1.567 0.784 C26 CVM 25 CVM C27 C27 C 0 1 N N S -33.856 14.635 -3.235 6.021 -1.624 -0.030 C27 CVM 26 CVM C28 C28 C 0 1 N N S -32.682 14.121 -2.428 5.976 -0.552 -1.123 C28 CVM 27 CVM C29 C29 C 0 1 N N R -32.773 14.622 -0.990 5.759 0.817 -0.471 C29 CVM 28 CVM C30 C30 C 0 1 N N N -34.831 16.771 -4.098 4.789 -2.594 1.916 C30 CVM 29 CVM O31 O31 O 0 1 N N N -36.114 16.149 -3.972 3.538 -2.622 2.605 O31 CVM 30 CVM O32 O32 O 0 1 N N N -33.698 14.269 -4.610 6.151 -2.914 -0.631 O32 CVM 31 CVM O33 O33 O 0 1 N N N -32.680 12.689 -2.439 7.211 -0.549 -1.842 O33 CVM 32 CVM O34 O34 O 0 1 N N N -31.520 15.198 -0.594 5.642 1.816 -1.487 O34 CVM 33 CVM H11C H11C H 0 0 N N N -37.334 19.766 3.653 -2.770 -0.084 -0.211 H11C CVM 34 CVM H12C H12C H 0 0 N N N -37.843 21.407 3.101 -3.072 1.332 -1.246 H12C CVM 35 CVM H21C H21C H 0 0 N N N -35.753 21.982 4.836 -4.267 0.865 1.523 H21C CVM 36 CVM H22C H22C H 0 0 N N N -37.495 22.034 5.259 -4.569 2.281 0.488 H22C CVM 37 CVM H31C H31C H 0 0 N N N -37.458 19.840 6.155 -5.513 0.799 -1.263 H31C CVM 38 CVM H32C H32C H 0 0 N N N -35.826 19.502 5.391 -5.210 -0.617 -0.227 H32C CVM 39 CVM H41C H41C H 0 0 N N N -34.862 21.234 6.936 -6.708 0.332 1.507 H41C CVM 40 CVM H42C H42C H 0 0 N N N -36.435 21.274 7.788 -7.010 1.748 0.472 H42C CVM 41 CVM H6 H6 H 0 1 N N N -35.067 18.637 7.208 -7.895 0.203 -1.301 H6 CVM 42 CVM H71C H71C H 0 0 N N N -37.496 19.236 8.295 -9.225 -0.038 1.436 H71C CVM 43 CVM H72C H72C H 0 0 N N N -36.534 17.778 8.762 -9.422 1.320 0.302 H72C CVM 44 CVM H111 H111 H 0 0 N N N -33.287 19.732 8.348 -6.659 -1.824 -0.585 H111 CVM 45 CVM H112 H112 H 0 0 N N N -34.401 20.647 9.405 -7.612 -1.874 0.918 H112 CVM 46 CVM H81C H81C H 0 0 N N N -36.342 20.468 10.196 -11.306 -0.281 0.109 H81C CVM 47 CVM H82C H82C H 0 0 N N N -37.435 19.139 10.712 -10.354 -0.232 -1.393 H82C CVM 48 CVM H91C H91C H 0 0 N N N -35.023 19.312 11.773 -10.070 -2.309 0.825 H91C CVM 49 CVM H92C H92C H 0 0 N N N -35.641 17.710 11.270 -10.870 -2.568 -0.744 H92C CVM 50 CVM H101 H101 H 0 0 N N N -33.221 18.627 10.484 -8.543 -3.425 -0.777 H101 CVM 51 CVM H102 H102 H 0 0 N N N -34.237 17.592 9.423 -8.740 -2.068 -1.911 H102 CVM 52 CVM H13 H13 H 0 1 N N N -35.312 18.985 3.214 -0.716 1.824 -1.177 H13 CVM 53 CVM H18 H18 H 0 1 N N N -36.304 19.474 0.381 0.339 2.195 1.664 H18 CVM 54 CVM H15 H15 H 0 1 N N N -33.221 18.021 2.318 1.001 0.172 -1.649 H15 CVM 55 CVM H16 H16 H 0 1 N N N -34.290 18.080 -0.513 2.138 0.464 1.170 H16 CVM 56 CVM H191 H191 H 0 0 N N N -32.223 19.131 -0.339 2.356 -1.763 -0.807 H191 CVM 57 CVM H192 H192 H 0 0 N N N -31.633 19.804 1.228 1.295 -1.847 0.620 H192 CVM 58 CVM H17 H17 H 0 1 N N N -35.623 16.906 1.935 1.721 2.532 -1.038 H17 CVM 59 CVM H21 H21 H 0 1 N N N -37.330 16.668 0.406 2.501 3.968 0.705 H21 CVM 60 CVM H22 H22 H 0 1 N N N -37.575 18.656 2.737 -0.936 4.020 0.791 H22 CVM 61 CVM H20 H20 H 0 1 N N N -30.938 17.483 -0.006 0.558 -3.303 -1.124 H20 CVM 62 CVM H24 H24 H 0 1 N N N -34.815 14.985 -0.578 4.337 1.739 0.861 H24 CVM 63 CVM H29 H29 H 0 1 N N N -33.006 13.733 -0.386 6.605 1.051 0.175 H29 CVM 64 CVM H26 H26 H 0 1 N N N -32.847 16.513 -3.311 3.879 -1.791 0.136 H26 CVM 65 CVM H27 H27 H 0 1 N N N -34.801 14.205 -2.871 6.872 -1.440 0.626 H27 CVM 66 CVM H301 H301 H 0 0 N N N -34.924 17.848 -3.892 4.997 -3.580 1.500 H301 CVM 67 CVM H302 H302 H 0 0 N N N -34.451 16.624 -5.120 5.581 -2.320 2.613 H302 CVM 68 CVM H28 H28 H 0 1 N N N -31.750 14.493 -2.878 5.154 -0.764 -1.808 H28 CVM 69 CVM H32 H32 H 0 1 N N N -33.663 15.053 -5.145 6.951 -3.021 -1.164 H32 CVM 70 CVM H33 H33 H 0 1 N N N -32.680 12.379 -3.337 7.252 0.107 -2.551 H33 CVM 71 CVM H34 H34 H 0 1 N N N -30.973 15.325 -1.360 5.498 2.709 -1.145 H34 CVM 72 CVM H31 H31 H 0 1 N N N -36.311 16.011 -3.053 3.505 -3.253 3.337 H31 CVM 73 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal CVM C1 C2 SING N N 1 CVM C1 O12 SING N N 2 CVM C2 C3 SING N N 3 CVM C3 C4 SING N N 4 CVM C4 C6 SING N N 5 CVM C6 C7 SING N N 6 CVM C6 C11 SING N N 7 CVM C7 C8 SING N N 8 CVM C8 C9 SING N N 9 CVM C9 C10 SING N N 10 CVM C10 C11 SING N N 11 CVM O12 C13 SING N N 12 CVM C13 O14 SING N N 13 CVM C13 C18 SING N N 14 CVM O14 C15 SING N N 15 CVM C15 C16 SING N N 16 CVM C15 C19 SING N N 17 CVM C16 C17 SING N N 18 CVM C16 O23 SING N N 19 CVM C17 C18 SING N N 20 CVM C17 O21 SING N N 21 CVM C18 O22 SING N N 22 CVM C19 O20 SING N N 23 CVM O23 C24 SING N N 24 CVM C24 O25 SING N N 25 CVM C24 C29 SING N N 26 CVM O25 C26 SING N N 27 CVM C26 C27 SING N N 28 CVM C26 C30 SING N N 29 CVM C27 C28 SING N N 30 CVM C27 O32 SING N N 31 CVM C28 C29 SING N N 32 CVM C28 O33 SING N N 33 CVM C29 O34 SING N N 34 CVM C30 O31 SING N N 35 CVM C1 H11C SING N N 36 CVM C1 H12C SING N N 37 CVM C2 H21C SING N N 38 CVM C2 H22C SING N N 39 CVM C3 H31C SING N N 40 CVM C3 H32C SING N N 41 CVM C4 H41C SING N N 42 CVM C4 H42C SING N N 43 CVM C6 H6 SING N N 44 CVM C7 H71C SING N N 45 CVM C7 H72C SING N N 46 CVM C11 H111 SING N N 47 CVM C11 H112 SING N N 48 CVM C8 H81C SING N N 49 CVM C8 H82C SING N N 50 CVM C9 H91C SING N N 51 CVM C9 H92C SING N N 52 CVM C10 H101 SING N N 53 CVM C10 H102 SING N N 54 CVM C13 H13 SING N N 55 CVM C18 H18 SING N N 56 CVM C15 H15 SING N N 57 CVM C16 H16 SING N N 58 CVM C19 H191 SING N N 59 CVM C19 H192 SING N N 60 CVM C17 H17 SING N N 61 CVM O21 H21 SING N N 62 CVM O22 H22 SING N N 63 CVM O20 H20 SING N N 64 CVM C24 H24 SING N N 65 CVM C29 H29 SING N N 66 CVM C26 H26 SING N N 67 CVM C27 H27 SING N N 68 CVM C30 H301 SING N N 69 CVM C30 H302 SING N N 70 CVM C28 H28 SING N N 71 CVM O32 H32 SING N N 72 CVM O33 H33 SING N N 73 CVM O34 H34 SING N N 74 CVM O31 H31 SING N N 75 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor CVM SMILES ACDLabs 10.04 "O(CCCCC1CCCCC1)C3OC(C(OC2OC(CO)C(O)C(O)C2O)C(O)C3O)CO" CVM SMILES_CANONICAL CACTVS 3.352 "OC[C@H]1O[C@H](O[C@H]2[C@H](O)[C@@H](O)[C@H](OCCCCC3CCCCC3)O[C@@H]2CO)[C@H](O)[C@@H](O)[C@@H]1O" CVM SMILES CACTVS 3.352 "OC[CH]1O[CH](O[CH]2[CH](O)[CH](O)[CH](OCCCCC3CCCCC3)O[CH]2CO)[CH](O)[CH](O)[CH]1O" CVM SMILES_CANONICAL "OpenEye OEToolkits" 1.6.1 "C1CCC(CC1)CCCCO[C@H]2[C@@H]([C@H]([C@@H]([C@H](O2)CO)O[C@@H]3[C@@H]([C@H]([C@@H]([C@H](O3)CO)O)O)O)O)O" CVM SMILES "OpenEye OEToolkits" 1.6.1 "C1CCC(CC1)CCCCOC2C(C(C(C(O2)CO)OC3C(C(C(C(O3)CO)O)O)O)O)O" CVM InChI InChI 1.03 "InChI=1S/C22H40O11/c23-10-13-15(25)16(26)18(28)22(31-13)33-20-14(11-24)32-21(19(29)17(20)27)30-9-5-4-8-12-6-2-1-3-7-12/h12-29H,1-11H2/t13-,14-,15-,16+,17-,18-,19-,20-,21-,22-/m1/s1" CVM InChIKey InChI 1.03 JRNQXDHDSXBSFV-WXFJLFHKSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier CVM "SYSTEMATIC NAME" ACDLabs 10.04 "4-cyclohexylbutyl 4-O-alpha-D-glucopyranosyl-beta-D-glucopyranoside" CVM "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "(2R,3R,4S,5S,6R)-2-[(2R,3S,4R,5R,6R)-6-(4-cyclohexylbutoxy)-4,5-dihydroxy-2-(hydroxymethyl)oxan-3-yl]oxy-6-(hydroxymethyl)oxane-3,4,5-triol" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site CVM "Create component" 2009-05-11 EBI CVM "Modify descriptor" 2011-06-04 RCSB CVM "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id CVM _pdbx_chem_comp_synonyms.name "4-CYCLOHEXYLBUTYL 4-O-ALPHA-D-GLUCOPYRANOSYL-BETA-D-GLUCOPYRANOSIDE" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##