data_CVP # _chem_comp.id CVP _chem_comp.name "4-[(piperazin-1-yl)methyl]-N-{[4-({[(pyridin-3-yl)methyl]carbamoyl}amino)phenyl]methyl}benzamide" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H30 N6 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2017-10-04 _chem_comp.pdbx_modified_date 2018-09-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 458.555 _chem_comp.one_letter_code ? _chem_comp.three_letter_code CVP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6B75 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal CVP C1 C1 C 0 1 Y N N 17.136 -65.977 -5.959 -3.251 -1.474 -0.872 C1 CVP 1 CVP C3 C2 C 0 1 N N N 14.897 -65.063 -6.549 -5.052 -0.139 -0.073 C3 CVP 2 CVP C11 C3 C 0 1 Y N N 19.535 -66.267 -6.136 -1.155 -2.219 -1.767 C11 CVP 3 CVP C12 C4 C 0 1 Y N N 18.273 -66.282 -6.727 -2.391 -1.630 -1.951 C12 CVP 4 CVP C13 C5 C 0 1 Y N N 12.208 -62.143 -8.914 -9.373 0.760 0.791 C13 CVP 5 CVP C15 C6 C 0 1 Y N N 12.737 -61.913 -11.234 -10.840 2.222 -0.219 C15 CVP 6 CVP C16 C7 C 0 1 Y N N 13.338 -63.180 -11.226 -9.809 3.069 -0.578 C16 CVP 7 CVP C17 C8 C 0 1 Y N N 13.352 -63.929 -10.030 -8.509 2.739 -0.227 C17 CVP 8 CVP C18 C9 C 0 1 N N N 21.100 -65.859 -4.192 0.575 -3.294 -0.313 C18 CVP 9 CVP C20 C10 C 0 1 N N N 21.284 -67.261 -2.135 2.849 -2.606 0.230 C20 CVP 10 CVP C21 C11 C 0 1 Y N N 21.830 -68.532 -1.486 3.846 -1.565 0.557 C21 CVP 11 CVP C23 C12 C 0 1 Y N N 22.252 -68.522 -0.139 5.178 -1.917 0.785 C23 CVP 12 CVP C24 C13 C 0 1 Y N N 22.841 -69.667 0.423 6.104 -0.941 1.090 C24 CVP 13 CVP C25 C14 C 0 1 Y N N 23.057 -70.832 -0.356 5.715 0.385 1.170 C25 CVP 14 CVP C26 C15 C 0 1 Y N N 22.642 -70.846 -1.701 4.397 0.740 0.946 C26 CVP 15 CVP C27 C16 C 0 1 Y N N 22.058 -69.698 -2.264 3.462 -0.225 0.633 C27 CVP 16 CVP C28 C17 C 0 1 N N N 23.723 -72.084 0.254 6.732 1.446 1.504 C28 CVP 17 CVP C30 C18 C 0 1 N N N 25.945 -72.749 1.115 8.154 3.145 0.526 C30 CVP 18 CVP N2 N1 N 0 1 N N N 15.923 -65.927 -6.707 -4.507 -0.884 -1.056 N2 CVP 19 CVP N4 N2 N 0 1 N N N 13.938 -65.124 -7.498 -6.304 0.341 -0.207 N4 CVP 20 CVP O5 O1 O 0 1 N N N 14.809 -64.319 -5.586 -4.413 0.100 0.933 O5 CVP 21 CVP C6 C19 C 0 1 N N N 12.748 -64.270 -7.528 -6.896 1.150 0.861 C6 CVP 22 CVP C7 C20 C 0 1 Y N N 12.765 -63.437 -8.844 -8.292 1.558 0.466 C7 CVP 23 CVP C8 C21 C 0 1 Y N N 17.293 -65.555 -4.619 -2.866 -1.911 0.389 C8 CVP 24 CVP C9 C22 C 0 1 Y N N 18.568 -65.557 -4.017 -1.629 -2.499 0.566 C9 CVP 25 CVP C10 C23 C 0 1 Y N N 19.692 -65.902 -4.787 -0.774 -2.652 -0.510 C10 CVP 26 CVP N14 N3 N 0 1 Y N N 12.201 -61.430 -10.079 -10.597 1.109 0.446 N14 CVP 27 CVP N19 N4 N 0 1 N N N 21.493 -67.064 -3.470 1.564 -2.263 0.011 N19 CVP 28 CVP O22 O2 O 0 1 N N N 20.737 -66.425 -1.421 3.187 -3.771 0.159 O22 CVP 29 CVP N29 N5 N 0 1 N N N 25.196 -72.130 -0.017 7.336 1.952 0.264 N29 CVP 30 CVP C31 C24 C 0 1 N N N 27.481 -72.795 0.857 8.700 3.687 -0.797 C31 CVP 31 CVP N32 N6 N 0 1 N N N 27.804 -73.370 -0.477 9.493 2.643 -1.462 N32 CVP 32 CVP C33 C25 C 0 1 N N N 27.122 -72.679 -1.595 8.675 1.451 -1.724 C33 CVP 33 CVP C34 C26 C 0 1 N N N 25.583 -72.667 -1.359 8.129 0.908 -0.400 C34 CVP 34 CVP H1 H1 H 0 1 N N N 20.402 -66.539 -6.720 -0.486 -2.341 -2.606 H1 CVP 35 CVP H2 H2 H 0 1 N N N 18.169 -66.528 -7.774 -2.688 -1.292 -2.932 H2 CVP 36 CVP H3 H3 H 0 1 N N N 11.777 -61.706 -8.026 -9.213 -0.161 1.331 H3 CVP 37 CVP H4 H4 H 0 1 N N N 12.700 -61.329 -12.142 -11.855 2.472 -0.488 H4 CVP 38 CVP H5 H5 H 0 1 N N N 13.785 -63.578 -12.125 -10.014 3.980 -1.122 H5 CVP 39 CVP H6 H6 H 0 1 N N N 13.823 -64.901 -10.022 -7.683 3.382 -0.495 H6 CVP 40 CVP H7 H7 H 0 1 N N N 21.815 -65.703 -5.014 0.520 -4.013 0.504 H7 CVP 41 CVP H8 H8 H 0 1 N N N 21.152 -65.010 -3.495 0.871 -3.806 -1.229 H8 CVP 42 CVP H9 H9 H 0 1 N N N 22.122 -67.633 0.460 5.482 -2.951 0.723 H9 CVP 43 CVP H10 H10 H 0 1 N N N 23.133 -69.660 1.463 7.134 -1.212 1.266 H10 CVP 44 CVP H11 H11 H 0 1 N N N 22.772 -71.736 -2.299 4.100 1.777 1.010 H11 CVP 45 CVP H12 H12 H 0 1 N N N 21.778 -69.703 -3.307 2.434 0.054 0.458 H12 CVP 46 CVP H13 H13 H 0 1 N N N 23.563 -72.076 1.342 6.243 2.265 2.031 H13 CVP 47 CVP H14 H14 H 0 1 N N N 23.255 -72.981 -0.179 7.509 1.018 2.138 H14 CVP 48 CVP H15 H15 H 0 1 N N N 25.757 -72.162 2.026 7.541 3.908 1.006 H15 CVP 49 CVP H16 H16 H 0 1 N N N 25.580 -73.777 1.260 8.984 2.880 1.180 H16 CVP 50 CVP H17 H17 H 0 1 N N N 15.820 -66.609 -7.431 -4.985 -1.010 -1.890 H17 CVP 51 CVP H18 H18 H 0 1 N N N 14.048 -65.797 -8.229 -6.813 0.150 -1.010 H18 CVP 52 CVP H19 H19 H 0 1 N N N 12.756 -63.593 -6.661 -6.935 0.566 1.780 H19 CVP 53 CVP H20 H20 H 0 1 N N N 11.843 -64.895 -7.497 -6.289 2.041 1.021 H20 CVP 54 CVP H21 H21 H 0 1 N N N 16.432 -65.230 -4.054 -3.533 -1.791 1.230 H21 CVP 55 CVP H22 H22 H 0 1 N N N 18.680 -65.296 -2.975 -1.328 -2.839 1.546 H22 CVP 56 CVP H23 H23 H 0 1 N N N 21.944 -67.792 -3.986 1.294 -1.332 0.067 H23 CVP 57 CVP H25 H25 H 0 1 N N N 27.954 -73.413 1.634 7.869 3.977 -1.441 H25 CVP 58 CVP H26 H26 H 0 1 N N N 27.881 -71.772 0.909 9.330 4.555 -0.603 H26 CVP 59 CVP H27 H27 H 0 1 N N N 27.529 -74.331 -0.483 10.310 2.409 -0.918 H27 CVP 60 CVP H29 H29 H 0 1 N N N 27.342 -73.205 -2.536 7.844 1.716 -2.378 H29 CVP 61 CVP H30 H30 H 0 1 N N N 27.488 -71.644 -1.660 9.288 0.688 -2.204 H30 CVP 62 CVP H31 H31 H 0 1 N N N 25.115 -72.042 -2.134 8.960 0.618 0.244 H31 CVP 63 CVP H32 H32 H 0 1 N N N 25.208 -73.698 -1.444 7.499 0.041 -0.595 H32 CVP 64 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal CVP C15 C16 DOUB Y N 1 CVP C15 N14 SING Y N 2 CVP C16 C17 SING Y N 3 CVP N14 C13 DOUB Y N 4 CVP C17 C7 DOUB Y N 5 CVP C13 C7 SING Y N 6 CVP C7 C6 SING N N 7 CVP C6 N4 SING N N 8 CVP N4 C3 SING N N 9 CVP C12 C11 DOUB Y N 10 CVP C12 C1 SING Y N 11 CVP N2 C3 SING N N 12 CVP N2 C1 SING N N 13 CVP C3 O5 DOUB N N 14 CVP C11 C10 SING Y N 15 CVP C1 C8 DOUB Y N 16 CVP C10 C18 SING N N 17 CVP C10 C9 DOUB Y N 18 CVP C8 C9 SING Y N 19 CVP C18 N19 SING N N 20 CVP N19 C20 SING N N 21 CVP C27 C26 DOUB Y N 22 CVP C27 C21 SING Y N 23 CVP C20 C21 SING N N 24 CVP C20 O22 DOUB N N 25 CVP C26 C25 SING Y N 26 CVP C33 C34 SING N N 27 CVP C33 N32 SING N N 28 CVP C21 C23 DOUB Y N 29 CVP C34 N29 SING N N 30 CVP N32 C31 SING N N 31 CVP C25 C28 SING N N 32 CVP C25 C24 DOUB Y N 33 CVP C23 C24 SING Y N 34 CVP N29 C28 SING N N 35 CVP N29 C30 SING N N 36 CVP C31 C30 SING N N 37 CVP C11 H1 SING N N 38 CVP C12 H2 SING N N 39 CVP C13 H3 SING N N 40 CVP C15 H4 SING N N 41 CVP C16 H5 SING N N 42 CVP C17 H6 SING N N 43 CVP C18 H7 SING N N 44 CVP C18 H8 SING N N 45 CVP C23 H9 SING N N 46 CVP C24 H10 SING N N 47 CVP C26 H11 SING N N 48 CVP C27 H12 SING N N 49 CVP C28 H13 SING N N 50 CVP C28 H14 SING N N 51 CVP C30 H15 SING N N 52 CVP C30 H16 SING N N 53 CVP N2 H17 SING N N 54 CVP N4 H18 SING N N 55 CVP C6 H19 SING N N 56 CVP C6 H20 SING N N 57 CVP C8 H21 SING N N 58 CVP C9 H22 SING N N 59 CVP N19 H23 SING N N 60 CVP C31 H25 SING N N 61 CVP C31 H26 SING N N 62 CVP N32 H27 SING N N 63 CVP C33 H29 SING N N 64 CVP C33 H30 SING N N 65 CVP C34 H31 SING N N 66 CVP C34 H32 SING N N 67 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor CVP SMILES ACDLabs 12.01 "c1(ccc(cc1)CNC(c3ccc(CN2CCNCC2)cc3)=O)NC(=O)NCc4cnccc4" CVP InChI InChI 1.03 "InChI=1S/C26H30N6O2/c33-25(23-7-3-21(4-8-23)19-32-14-12-27-13-15-32)29-17-20-5-9-24(10-6-20)31-26(34)30-18-22-2-1-11-28-16-22/h1-11,16,27H,12-15,17-19H2,(H,29,33)(H2,30,31,34)" CVP InChIKey InChI 1.03 UPQVXXVUUYBILK-UHFFFAOYSA-N CVP SMILES_CANONICAL CACTVS 3.385 "O=C(NCc1cccnc1)Nc2ccc(CNC(=O)c3ccc(CN4CCNCC4)cc3)cc2" CVP SMILES CACTVS 3.385 "O=C(NCc1cccnc1)Nc2ccc(CNC(=O)c3ccc(CN4CCNCC4)cc3)cc2" CVP SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "c1cc(cnc1)CNC(=O)Nc2ccc(cc2)CNC(=O)c3ccc(cc3)CN4CCNCC4" CVP SMILES "OpenEye OEToolkits" 2.0.6 "c1cc(cnc1)CNC(=O)Nc2ccc(cc2)CNC(=O)c3ccc(cc3)CN4CCNCC4" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier CVP "SYSTEMATIC NAME" ACDLabs 12.01 "4-[(piperazin-1-yl)methyl]-N-{[4-({[(pyridin-3-yl)methyl]carbamoyl}amino)phenyl]methyl}benzamide" CVP "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "4-(piperazin-1-ylmethyl)-~{N}-[[4-(pyridin-3-ylmethylcarbamoylamino)phenyl]methyl]benzamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site CVP "Create component" 2017-10-04 RCSB CVP "Initial release" 2018-10-03 RCSB #