data_CXC # _chem_comp.id CXC _chem_comp.name "[[(2~{R},3~{S},4~{R},5~{R})-5-[2,6-bis(azanyl)purin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H17 N6 O13 P3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2019-05-24 _chem_comp.pdbx_modified_date 2022-03-25 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 522.196 _chem_comp.one_letter_code ? _chem_comp.three_letter_code CXC _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6K4B _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal CXC "O5'" O1 O 0 1 N N N 48.588 47.731 -23.548 0.919 1.212 0.200 "O5'" CXC 1 CXC "C5'" C1 C 0 1 N N N 49.653 48.254 -22.792 -0.131 2.155 0.423 "C5'" CXC 2 CXC "C4'" C2 C 0 1 N N R 50.473 49.411 -23.424 -1.275 1.886 -0.556 "C4'" CXC 3 CXC "O4'" O2 O 0 1 N N N 51.340 50.028 -22.420 -1.882 0.616 -0.261 "O4'" CXC 4 CXC "C1'" C3 C 0 1 N N R 52.768 49.684 -22.774 -3.290 0.743 -0.555 "C1'" CXC 5 CXC N1 N1 N 0 1 Y N N 57.176 47.498 -21.279 -7.661 -2.065 -0.349 N1 CXC 6 CXC C6 C4 C 0 1 Y N N 56.194 46.599 -21.423 -6.869 -2.368 0.674 C6 CXC 7 CXC C2 C5 C 0 1 Y N N 56.900 48.794 -21.520 -7.302 -1.159 -1.248 C2 CXC 8 CXC N3 N2 N 0 1 Y N N 55.655 49.147 -21.894 -6.149 -0.512 -1.179 N3 CXC 9 CXC C4 C6 C 0 1 Y N N 54.680 48.231 -22.049 -5.297 -0.754 -0.188 C4 CXC 10 CXC C5 C7 C 0 1 Y N N 54.965 46.951 -21.802 -5.635 -1.706 0.788 C5 CXC 11 CXC "C2'" C8 C 0 1 N N R 52.709 49.852 -24.272 -3.641 2.162 -0.038 "C2'" CXC 12 CXC "O2'" O3 O 0 1 N N N 52.287 51.179 -24.620 -4.782 2.685 -0.720 "O2'" CXC 13 CXC "C3'" C9 C 0 1 N N S 51.554 48.960 -24.492 -2.366 2.963 -0.397 "C3'" CXC 14 CXC "O3'" O4 O 0 1 N N N 51.112 49.134 -25.858 -2.550 3.673 -1.623 "O3'" CXC 15 CXC C8 C10 C 0 1 Y N N 52.908 47.100 -22.378 -3.681 -0.918 1.305 C8 CXC 16 CXC N2 N3 N 0 1 N N N 57.832 49.747 -21.389 -8.163 -0.879 -2.297 N2 CXC 17 CXC N6 N4 N 0 1 N N N 56.376 45.311 -21.201 -7.252 -3.315 1.608 N6 CXC 18 CXC N7 N5 N 0 1 Y N N 53.859 46.247 -22.003 -4.606 -1.757 1.669 N7 CXC 19 CXC N9 N6 N 0 1 Y N N 53.398 48.340 -22.417 -4.061 -0.274 0.164 N9 CXC 20 CXC O1A O5 O 0 1 N N N 50.337 46.063 -24.567 1.954 0.843 2.588 O1A CXC 21 CXC O1B O6 O 0 1 N N N 48.104 43.224 -25.837 5.105 -1.000 1.999 O1B CXC 22 CXC O1G O7 O 0 1 N N N 44.647 45.753 -28.006 6.704 -2.707 -2.210 O1G CXC 23 CXC O2A O8 O 0 1 N N N 48.905 47.595 -26.054 2.921 2.535 0.984 O2A CXC 24 CXC O2B O9 O 0 1 N N N 49.474 45.137 -26.825 5.603 1.076 0.653 O2B CXC 25 CXC O2G O10 O 0 1 N N N 46.192 47.184 -26.594 7.438 -0.194 -1.975 O2G CXC 26 CXC O3A O11 O 0 1 N N N 47.967 45.601 -24.971 3.287 0.096 0.448 O3A CXC 27 CXC O3B O12 O 0 1 N N N 46.781 44.928 -27.215 5.376 -1.094 -0.614 O3B CXC 28 CXC O3G O13 O 0 1 N N N 46.827 46.553 -28.959 7.730 -1.832 -0.077 O3G CXC 29 CXC PA P1 P 0 1 N N N 49.057 46.770 -24.829 2.284 1.201 1.053 PA CXC 30 CXC PB P2 P 0 1 N N N 48.183 44.635 -26.261 4.859 -0.203 0.622 PB CXC 31 CXC PG P3 P 0 1 N N N 45.989 46.326 -27.776 6.832 -1.465 -1.195 PG CXC 32 CXC H1 H1 H 0 1 N N N 49.235 48.624 -21.844 -0.496 2.057 1.445 H1 CXC 33 CXC H2 H2 H 0 1 N N N 50.350 47.428 -22.587 0.250 3.165 0.268 H2 CXC 34 CXC H3 H3 H 0 1 N N N 49.795 50.150 -23.875 -0.897 1.887 -1.578 H3 CXC 35 CXC H4 H4 H 0 1 N N N 53.416 50.475 -22.370 -3.466 0.669 -1.628 H4 CXC 36 CXC H5 H5 H 0 1 N N N 53.626 49.520 -24.780 -3.804 2.153 1.040 H5 CXC 37 CXC H6 H6 H 0 1 N N N 53.007 51.785 -24.491 -5.041 3.571 -0.431 H6 CXC 38 CXC H7 H7 H 0 1 N N N 51.833 47.914 -24.300 -2.108 3.651 0.409 H7 CXC 39 CXC H8 H8 H 0 1 N N N 50.329 48.617 -26.006 -3.264 4.324 -1.597 H8 CXC 40 CXC H9 H9 H 0 1 N N N 51.890 46.828 -22.616 -2.751 -0.754 1.829 H9 CXC 41 CXC H10 H10 H 0 1 N N N 57.431 50.638 -21.604 -9.012 -1.344 -2.364 H10 CXC 42 CXC H11 H11 H 0 1 N N N 58.172 49.753 -20.449 -7.917 -0.219 -2.964 H11 CXC 43 CXC H12 H12 H 0 1 N N N 57.323 45.151 -20.924 -8.107 -3.766 1.519 H12 CXC 44 CXC H13 H13 H 0 1 N N N 55.760 45.008 -20.474 -6.666 -3.529 2.351 H13 CXC 45 CXC H14 H14 H 0 1 N N N 50.948 46.241 -25.272 1.535 -0.020 2.709 H14 CXC 46 CXC H15 H15 H 0 1 N N N 48.940 42.799 -25.991 4.646 -1.850 2.048 H15 CXC 47 CXC H16 H16 H 0 1 N N N 44.519 45.609 -28.936 7.545 -2.986 -2.599 H16 CXC 48 CXC H17 H17 H 0 1 N N N 46.885 47.809 -26.771 6.900 0.102 -2.722 H17 CXC 49 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal CXC O3G PG DOUB N N 1 CXC O1G PG SING N N 2 CXC PG O3B SING N N 3 CXC PG O2G SING N N 4 CXC O3B PB SING N N 5 CXC O2B PB DOUB N N 6 CXC PB O1B SING N N 7 CXC PB O3A SING N N 8 CXC O2A PA DOUB N N 9 CXC "O3'" "C3'" SING N N 10 CXC O3A PA SING N N 11 CXC PA O1A SING N N 12 CXC PA "O5'" SING N N 13 CXC "O2'" "C2'" SING N N 14 CXC "C3'" "C2'" SING N N 15 CXC "C3'" "C4'" SING N N 16 CXC "C2'" "C1'" SING N N 17 CXC "O5'" "C5'" SING N N 18 CXC "C4'" "C5'" SING N N 19 CXC "C4'" "O4'" SING N N 20 CXC "C1'" "O4'" SING N N 21 CXC "C1'" N9 SING N N 22 CXC N9 C8 SING Y N 23 CXC N9 C4 SING Y N 24 CXC C8 N7 DOUB Y N 25 CXC C4 N3 DOUB Y N 26 CXC C4 C5 SING Y N 27 CXC N7 C5 SING Y N 28 CXC N3 C2 SING Y N 29 CXC C5 C6 DOUB Y N 30 CXC C2 N2 SING N N 31 CXC C2 N1 DOUB Y N 32 CXC C6 N1 SING Y N 33 CXC C6 N6 SING N N 34 CXC "C5'" H1 SING N N 35 CXC "C5'" H2 SING N N 36 CXC "C4'" H3 SING N N 37 CXC "C1'" H4 SING N N 38 CXC "C2'" H5 SING N N 39 CXC "O2'" H6 SING N N 40 CXC "C3'" H7 SING N N 41 CXC "O3'" H8 SING N N 42 CXC C8 H9 SING N N 43 CXC N2 H10 SING N N 44 CXC N2 H11 SING N N 45 CXC N6 H12 SING N N 46 CXC N6 H13 SING N N 47 CXC O1A H14 SING N N 48 CXC O1B H15 SING N N 49 CXC O1G H16 SING N N 50 CXC O2G H17 SING N N 51 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor CXC InChI InChI 1.03 "InChI=1S/C10H17N6O13P3/c11-7-4-8(15-10(12)14-7)16(2-13-4)9-6(18)5(17)3(27-9)1-26-31(22,23)29-32(24,25)28-30(19,20)21/h2-3,5-6,9,17-18H,1H2,(H,22,23)(H,24,25)(H2,19,20,21)(H4,11,12,14,15)/t3-,5-,6-,9-/m1/s1" CXC InChIKey InChI 1.03 CABDYDUZLRXGTB-UUOKFMHZSA-N CXC SMILES_CANONICAL CACTVS 3.385 "Nc1nc(N)c2ncn([C@@H]3O[C@H](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)[C@@H](O)[C@H]3O)c2n1" CXC SMILES CACTVS 3.385 "Nc1nc(N)c2ncn([CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)[CH](O)[CH]3O)c2n1" CXC SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc2c(nc(nc2n1[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)O)N)N" CXC SMILES "OpenEye OEToolkits" 2.0.7 "c1nc2c(nc(nc2n1C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)O)N)N" # _pdbx_chem_comp_identifier.comp_id CXC _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[[(2~{R},3~{S},4~{R},5~{R})-5-[2,6-bis(azanyl)purin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site CXC "Create component" 2019-05-24 PDBJ CXC "Initial release" 2022-03-30 RCSB ##