data_CY6
#
_chem_comp.id CY6
_chem_comp.name "N-((3S,6R)-6-((S,E)-4-ETHOXYCARBONYL-1-((S)-2-OXOPYRROLIDIN-3-YL)BUT-3-EN-2-YLCARBAMOYL)-2,9-DIMETHYL-4-OXODEC-8-EN-3-YL)-5-METHYLISOXAZOLE-3-CARBOXAMIDE"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C29 H42 N4 O7"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2005-09-14
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 558.666
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code CY6
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 2ALV
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
CY6 C5 C5 C 0 1 N N N N N N 73.376 47.714 18.433 -8.420 -0.585 -4.414 C5 CY6 1
CY6 C6 C6 C 0 1 Y N N N N N 72.893 46.299 18.605 -7.469 -0.606 -3.246 C6 CY6 2
CY6 O7 O7 O 0 1 Y N N N N N 71.959 45.824 17.767 -6.571 -1.560 -2.963 O7 CY6 3
CY6 N8 N8 N 0 1 Y N N N N N 71.708 44.482 18.177 -5.941 -1.302 -1.963 N8 CY6 4
CY6 C9 C9 C 0 1 Y N N N N N 72.486 44.290 19.181 -6.324 -0.166 -1.436 C9 CY6 5
CY6 C10 C10 C 0 1 Y N N N N N 73.304 45.457 19.521 -7.354 0.335 -2.280 C10 CY6 6
CY6 C11 C11 C 0 1 N N N N N N 72.594 43.047 19.954 -5.789 0.473 -0.209 C11 CY6 7
CY6 O12 O12 O 0 1 N N N N N N 73.091 42.080 19.314 -6.236 1.539 0.166 O12 CY6 8
CY6 N13 N13 N 0 1 N N N N N N 72.227 42.939 21.272 -4.805 -0.128 0.490 N13 CY6 9
CY6 C14 C14 C 0 1 N N S N N N 72.326 41.774 22.182 -4.276 0.503 1.701 C14 CY6 10
CY6 C15 C15 C 0 1 N N N N N N 72.133 42.143 23.753 -5.155 0.128 2.897 C15 CY6 11
CY6 C16 C16 C 0 1 N N N N N N 72.290 40.962 24.778 -4.698 0.910 4.130 C16 CY6 12
CY6 C17 C17 C 0 1 N N N N N N 70.736 42.815 24.019 -6.613 0.471 2.586 C17 CY6 13
CY6 C18 C18 C 0 1 N N N N N N 71.359 40.649 21.702 -2.868 0.024 1.943 C18 CY6 14
CY6 O19 O19 O 0 1 N N N N N N 70.125 40.839 21.547 -2.648 -0.797 2.801 O19 CY6 15
CY6 C20 C20 C 0 1 N N N N N N 72.013 39.283 21.487 -1.734 0.571 1.114 C20 CY6 16
CY6 C21 C21 C 0 1 N N R N N N 71.141 38.020 21.092 -0.445 -0.178 1.458 C21 CY6 17
CY6 C22 C22 C 0 1 N N N N N N 72.139 36.810 20.916 -0.580 -1.645 1.042 C22 CY6 18
CY6 C23 C23 C 0 1 N N N N N N 73.063 37.040 19.734 0.629 -2.413 1.508 C23 CY6 19
CY6 C24 C24 C 0 1 N N N N N N 74.102 36.098 19.379 1.439 -2.954 0.632 C24 CY6 20
CY6 C25 C25 C 0 1 N N N N N N 74.674 36.115 18.000 1.260 -2.669 -0.836 C25 CY6 21
CY6 C26 C26 C 0 1 N N N N N N 74.640 35.110 20.392 2.550 -3.862 1.094 C26 CY6 22
CY6 C29 C29 C 0 1 N N N N N N 70.214 37.799 22.319 0.711 0.448 0.721 C29 CY6 23
CY6 O30 O30 O 0 1 N N N N N N 70.708 38.051 23.497 0.507 1.131 -0.260 O30 CY6 24
CY6 N31 N31 N 0 1 N N N N N N 68.919 37.377 22.192 1.973 0.249 1.153 N31 CY6 25
CY6 C32 C32 C 0 1 N N S N N N 68.100 37.211 23.398 3.101 0.785 0.388 C32 CY6 26
CY6 C33 C33 C 0 1 N N N N N N 67.573 35.869 23.853 4.332 -0.040 0.663 C33 CY6 27
CY6 C34 C34 C 0 1 N N N N N N 68.844 35.026 24.270 4.948 -0.669 -0.335 C34 CY6 28
CY6 C35 C35 C 0 1 N N N N N N 68.547 33.649 24.904 6.147 -1.475 -0.067 C35 CY6 29
CY6 O36 O36 O 0 1 N N N N N N 67.364 33.281 25.088 6.577 -1.566 1.066 O36 CY6 30
CY6 O37 O37 O 0 1 N N N N N N 69.525 32.760 25.330 6.771 -2.112 -1.078 O37 CY6 31
CY6 C38 C38 C 0 1 N N N N N N 70.368 33.085 26.474 7.956 -2.907 -0.814 C38 CY6 32
CY6 C39 C39 C 0 1 N N N N N N 69.823 32.505 27.809 8.464 -3.517 -2.122 C39 CY6 33
CY6 C40 C40 C 0 1 N N N N N N 66.898 38.228 23.380 3.357 2.235 0.805 C40 CY6 34
CY6 C41 C41 C 0 1 N N S N N N 66.922 39.359 24.447 4.454 2.834 -0.077 C41 CY6 35
CY6 C42 C42 C 0 1 N N N N N N 67.180 39.033 25.945 4.839 4.246 0.422 C42 CY6 36
CY6 C43 C43 C 0 1 N N N N N N 66.770 40.370 26.624 5.107 4.987 -0.907 C43 CY6 37
CY6 N44 N44 N 0 1 N N N N N N 65.608 40.710 25.796 4.313 4.279 -1.918 N44 CY6 38
CY6 C45 C45 C 0 1 N N N N N N 65.654 40.151 24.564 3.938 3.061 -1.481 C45 CY6 39
CY6 O46 O46 O 0 1 N N N N N N 64.813 40.257 23.638 3.281 2.266 -2.120 O46 CY6 40
CY6 H51 1H5 H 0 1 N N N N N N 72.643 48.282 17.842 -7.947 -0.086 -5.260 H51 CY6 41
CY6 H52 2H5 H 0 1 N N N N N N 74.344 47.710 17.911 -8.677 -1.607 -4.693 H52 CY6 42
CY6 H53 3H5 H 0 1 N N N N N N 73.494 48.184 19.420 -9.326 -0.046 -4.136 H53 CY6 43
CY6 H10 H10 H 0 1 N N N N N N 74.037 45.586 20.304 -7.915 1.252 -2.175 H10 CY6 44
CY6 H13 H13 H 0 1 N N N N N N 71.836 43.766 21.677 -4.448 -0.979 0.190 H13 CY6 45
CY6 H14 H14 H 0 1 N N N N N N 73.359 41.400 22.125 -4.276 1.586 1.577 H14 CY6 46
CY6 H15 H15 H 0 1 N N N N N N 72.971 42.833 23.935 -5.066 -0.941 3.091 H15 CY6 47
CY6 H161 1H16 H 0 0 N N N N N N 71.433 40.959 25.467 -4.847 1.976 3.960 H161 CY6 48
CY6 H162 2H16 H 0 0 N N N N N N 73.220 41.094 25.350 -5.281 0.596 4.996 H162 CY6 49
CY6 H163 3H16 H 0 0 N N N N N N 72.327 40.006 24.234 -3.642 0.716 4.314 H163 CY6 50
CY6 H171 1H17 H 0 0 N N N N N N 69.937 42.159 23.643 -6.938 -0.086 1.707 H171 CY6 51
CY6 H172 2H17 H 0 0 N N N N N N 70.690 43.784 23.500 -7.238 0.204 3.438 H172 CY6 52
CY6 H173 3H17 H 0 0 N N N N N N 70.604 42.972 25.100 -6.701 1.540 2.391 H173 CY6 53
CY6 H201 1H20 H 0 0 N N N N N N 72.391 39.025 22.487 -1.606 1.632 1.329 H201 CY6 54
CY6 H202 2H20 H 0 0 N N N N N N 72.733 39.420 20.667 -1.960 0.438 0.056 H202 CY6 55
CY6 H21 H21 H 0 1 N N N N N N 70.557 38.132 20.167 -0.266 -0.121 2.531 H21 CY6 56
CY6 H221 1H22 H 0 0 N N N N N N 71.556 35.895 20.735 -1.477 -2.069 1.493 H221 CY6 57
CY6 H222 2H22 H 0 0 N N N N N N 72.744 36.708 21.829 -0.655 -1.709 -0.044 H222 CY6 58
CY6 H23 H23 H 0 1 N N N N N N 72.941 37.934 19.140 0.828 -2.518 2.565 H23 CY6 59
CY6 H251 1H25 H 0 0 N N N N N N 75.297 35.221 17.851 0.477 -1.923 -0.969 H251 CY6 60
CY6 H252 2H25 H 0 0 N N N N N N 75.289 37.017 17.870 2.196 -2.291 -1.250 H252 CY6 61
CY6 H253 3H25 H 0 0 N N N N N N 73.857 36.119 17.264 0.979 -3.587 -1.353 H253 CY6 62
CY6 H261 1H26 H 0 0 N N N N N N 73.931 35.019 21.228 2.521 -3.948 2.180 H261 CY6 63
CY6 H262 2H26 H 0 0 N N N N N N 75.610 35.465 20.771 2.422 -4.849 0.648 H262 CY6 64
CY6 H263 3H26 H 0 0 N N N N N N 74.770 34.128 19.914 3.510 -3.447 0.788 H263 CY6 65
CY6 H31 H31 H 0 1 N N N N N N 68.535 37.184 21.289 2.133 -0.249 1.969 H31 CY6 66
CY6 H32 H32 H 0 1 N N N N N N 68.882 37.393 24.150 2.870 0.749 -0.676 H32 CY6 67
CY6 H33 H33 H 0 1 N N N N N N 66.541 35.552 23.886 4.714 -0.122 1.670 H33 CY6 68
CY6 H34 H34 H 0 1 N N N N N N 69.851 35.388 24.122 4.566 -0.588 -1.342 H34 CY6 69
CY6 H381 1H38 H 0 0 N N N N N N 70.389 34.180 26.571 7.710 -3.705 -0.112 H381 CY6 70
CY6 H382 2H38 H 0 0 N N N N N N 71.369 32.665 26.297 8.732 -2.273 -0.384 H382 CY6 71
CY6 H391 1H39 H 0 0 N N N N N N 68.853 32.969 28.041 9.353 -4.115 -1.923 H391 CY6 72
CY6 H392 2H39 H 0 0 N N N N N N 70.536 32.718 28.619 7.688 -4.152 -2.551 H392 CY6 73
CY6 H393 3H39 H 0 0 N N N N N N 69.694 31.417 27.711 8.710 -2.720 -2.823 H393 CY6 74
CY6 H401 1H40 H 0 0 N N N N N N 66.004 37.629 23.609 2.440 2.814 0.689 H401 CY6 75
CY6 H402 2H40 H 0 0 N N N N N N 66.900 38.714 22.393 3.674 2.263 1.848 H402 CY6 76
CY6 H41 H41 H 0 1 N N N N N N 67.790 39.869 24.003 5.328 2.183 -0.093 H41 CY6 77
CY6 H421 1H42 H 0 0 N N N N N N 68.212 38.719 26.163 4.014 4.706 0.966 H421 CY6 78
CY6 H422 2H42 H 0 0 N N N N N N 66.576 38.184 26.297 5.738 4.210 1.036 H422 CY6 79
CY6 H431 1H43 H 0 0 N N N N N N 67.558 41.136 26.659 4.782 6.025 -0.832 H431 CY6 80
CY6 H432 2H43 H 0 0 N N N N N N 66.520 40.253 27.689 6.166 4.940 -1.159 H432 CY6 81
CY6 H44 H44 H 0 1 N N N N N N 64.859 41.294 26.109 4.088 4.641 -2.789 H44 CY6 82
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
CY6 C5 C6 SING N N 1
CY6 C5 H51 SING N N 2
CY6 C5 H52 SING N N 3
CY6 C5 H53 SING N N 4
CY6 C6 O7 SING Y N 5
CY6 C6 C10 DOUB Y N 6
CY6 O7 N8 SING Y N 7
CY6 N8 C9 DOUB Y N 8
CY6 C9 C10 SING Y N 9
CY6 C9 C11 SING N N 10
CY6 C10 H10 SING N N 11
CY6 C11 O12 DOUB N N 12
CY6 C11 N13 SING N N 13
CY6 N13 C14 SING N N 14
CY6 N13 H13 SING N N 15
CY6 C14 C15 SING N N 16
CY6 C14 C18 SING N N 17
CY6 C14 H14 SING N N 18
CY6 C15 C16 SING N N 19
CY6 C15 C17 SING N N 20
CY6 C15 H15 SING N N 21
CY6 C16 H161 SING N N 22
CY6 C16 H162 SING N N 23
CY6 C16 H163 SING N N 24
CY6 C17 H171 SING N N 25
CY6 C17 H172 SING N N 26
CY6 C17 H173 SING N N 27
CY6 C18 O19 DOUB N N 28
CY6 C18 C20 SING N N 29
CY6 C20 C21 SING N N 30
CY6 C20 H201 SING N N 31
CY6 C20 H202 SING N N 32
CY6 C21 C22 SING N N 33
CY6 C21 C29 SING N N 34
CY6 C21 H21 SING N N 35
CY6 C22 C23 SING N N 36
CY6 C22 H221 SING N N 37
CY6 C22 H222 SING N N 38
CY6 C23 C24 DOUB N N 39
CY6 C23 H23 SING N N 40
CY6 C24 C25 SING N N 41
CY6 C24 C26 SING N N 42
CY6 C25 H251 SING N N 43
CY6 C25 H252 SING N N 44
CY6 C25 H253 SING N N 45
CY6 C26 H261 SING N N 46
CY6 C26 H262 SING N N 47
CY6 C26 H263 SING N N 48
CY6 C29 O30 DOUB N N 49
CY6 C29 N31 SING N N 50
CY6 N31 C32 SING N N 51
CY6 N31 H31 SING N N 52
CY6 C32 C33 SING N N 53
CY6 C32 C40 SING N N 54
CY6 C32 H32 SING N N 55
CY6 C33 C34 DOUB N E 56
CY6 C33 H33 SING N N 57
CY6 C34 C35 SING N N 58
CY6 C34 H34 SING N N 59
CY6 C35 O36 DOUB N N 60
CY6 C35 O37 SING N N 61
CY6 O37 C38 SING N N 62
CY6 C38 C39 SING N N 63
CY6 C38 H381 SING N N 64
CY6 C38 H382 SING N N 65
CY6 C39 H391 SING N N 66
CY6 C39 H392 SING N N 67
CY6 C39 H393 SING N N 68
CY6 C40 C41 SING N N 69
CY6 C40 H401 SING N N 70
CY6 C40 H402 SING N N 71
CY6 C41 C42 SING N N 72
CY6 C41 C45 SING N N 73
CY6 C41 H41 SING N N 74
CY6 C42 C43 SING N N 75
CY6 C42 H421 SING N N 76
CY6 C42 H422 SING N N 77
CY6 C43 N44 SING N N 78
CY6 C43 H431 SING N N 79
CY6 C43 H432 SING N N 80
CY6 N44 C45 SING N N 81
CY6 N44 H44 SING N N 82
CY6 C45 O46 DOUB N N 83
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
CY6 SMILES ACDLabs 10.04 "O=C(NC(C(=O)CC(C(=O)NC(\C=C\C(=O)OCC)CC1C(=O)NCC1)C\C=C(/C)C)C(C)C)c2noc(c2)C"
CY6 SMILES_CANONICAL CACTVS 3.341 "CCOC(=O)/C=C/[C@H](C[C@@H]1CCNC1=O)NC(=O)[C@H](CC=C(C)C)CC(=O)[C@@H](NC(=O)c2cc(C)on2)C(C)C"
CY6 SMILES CACTVS 3.341 "CCOC(=O)C=C[CH](C[CH]1CCNC1=O)NC(=O)[CH](CC=C(C)C)CC(=O)[CH](NC(=O)c2cc(C)on2)C(C)C"
CY6 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CCOC(=O)\C=C\[C@H](C[C@@H]1CCNC1=O)NC(=O)[C@H](CC=C(C)C)CC(=O)[C@H](C(C)C)NC(=O)c2cc(on2)C"
CY6 SMILES "OpenEye OEToolkits" 1.5.0 "CCOC(=O)C=CC(CC1CCNC1=O)NC(=O)C(CC=C(C)C)CC(=O)C(C(C)C)NC(=O)c2cc(on2)C"
CY6 InChI InChI 1.03 "InChI=1S/C29H42N4O7/c1-7-39-25(35)11-10-22(15-21-12-13-30-27(21)36)31-28(37)20(9-8-17(2)3)16-24(34)26(18(4)5)32-29(38)23-14-19(6)40-33-23/h8,10-11,14,18,20-22,26H,7,9,12-13,15-16H2,1-6H3,(H,30,36)(H,31,37)(H,32,38)/b11-10+/t20-,21+,22-,26+/m1/s1"
CY6 InChIKey InChI 1.03 CSNQHKJCKPMZCY-YFUAOJPXSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
CY6 "SYSTEMATIC NAME" ACDLabs 10.04 "ethyl (2E,4S)-4-{[(2R,5S)-6-methyl-2-(3-methylbut-2-en-1-yl)-5-{[(5-methylisoxazol-3-yl)carbonyl]amino}-4-oxoheptanoyl]amino}-5-[(3S)-2-oxopyrrolidin-3-yl]pent-2-enoate"
CY6 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "ethyl (E,4S)-4-[[(2R,5S)-6-methyl-2-(3-methylbut-2-enyl)-5-[(5-methyl-1,2-oxazol-3-yl)carbonylamino]-4-oxo-heptanoyl]amino]-5-[(3S)-2-oxopyrrolidin-3-yl]pent-2-enoate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
CY6 "Create component" 2005-09-14 RCSB
CY6 "Modify descriptor" 2011-06-04 RCSB
CY6 "Modify PCM" 2024-09-27 PDBE
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id CY6
_pdbx_chem_comp_pcm.modified_residue_id CYS
_pdbx_chem_comp_pcm.type None
_pdbx_chem_comp_pcm.category "Covalent chemical modification"
_pdbx_chem_comp_pcm.position "Amino-acid side chain"
_pdbx_chem_comp_pcm.polypeptide_position "Any position"
_pdbx_chem_comp_pcm.comp_id_linking_atom C33
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
#