data_CY8 # _chem_comp.id CY8 _chem_comp.name Cyclopamine _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H41 N O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "(3alpha,8alpha,14beta,22S,23R)-17,23-epoxyveratraman-3-ol" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2014-01-07 _chem_comp.pdbx_modified_date 2021-03-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 411.620 _chem_comp.one_letter_code ? _chem_comp.three_letter_code CY8 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4O9R _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal CY8 O01 O01 O 0 1 N N N 46.883 6.290 47.795 2.890 -0.316 -0.926 O01 CY8 1 CY8 O02 O02 O 0 1 N N N 52.633 14.243 53.096 -8.124 -0.833 -0.334 O02 CY8 2 CY8 N03 N03 N 0 1 N N N 46.958 3.140 46.098 5.746 0.292 1.156 N03 CY8 3 CY8 C04 C04 C 0 1 N N S 50.695 9.716 50.165 -2.594 0.079 0.626 C04 CY8 4 CY8 C05 C05 C 0 1 N N S 49.999 10.049 48.842 -1.985 1.102 -0.373 C05 CY8 5 CY8 C06 C06 C 0 1 N N S 49.878 8.683 48.179 -0.592 1.297 0.232 C06 CY8 6 CY8 C07 C07 C 0 1 N N R 50.731 10.965 51.106 -3.862 -0.482 0.030 C07 CY8 7 CY8 C08 C08 C 0 1 N N R 48.347 6.175 47.735 2.205 0.305 0.191 C08 CY8 8 CY8 C09 C09 C 0 1 N N N 49.503 7.780 49.326 -0.178 -0.131 0.595 C09 CY8 9 CY8 C10 C10 C 0 1 N N N 50.036 8.391 50.609 -1.453 -0.910 0.861 C10 CY8 10 CY8 C11 C11 C 0 1 N N N 48.837 8.605 47.085 0.412 1.780 -0.817 C11 CY8 11 CY8 C12 C12 C 0 1 N N R 48.637 4.660 47.359 3.218 0.369 1.365 C12 CY8 12 CY8 C13 C13 C 0 1 N N N 48.803 7.157 46.615 1.808 1.720 -0.196 C13 CY8 13 CY8 C14 C14 C 0 1 N N N 48.814 6.623 49.150 1.047 -0.556 0.594 C14 CY8 14 CY8 C15 C15 C 0 1 N N N 50.826 11.078 48.081 -2.896 2.320 -0.334 C15 CY8 15 CY8 C16 C16 C 0 1 N N S 47.237 4.057 47.188 4.468 -0.296 0.782 C16 CY8 16 CY8 C17 C17 C 0 1 N N N 51.179 12.200 50.310 -4.694 0.638 -0.550 C17 CY8 17 CY8 C18 C18 C 0 1 N N R 46.321 5.241 47.009 4.268 -0.018 -0.734 C18 CY8 18 CY8 C19 C19 C 0 1 N N N 51.756 10.701 52.243 -4.679 -1.195 1.111 C19 CY8 19 CY8 C20 C20 C 0 1 N N N 51.211 12.229 48.965 -4.277 1.843 -0.715 C20 CY8 20 CY8 C21 C21 C 0 1 N N N 49.345 11.300 51.696 -3.506 -1.477 -1.077 C21 CY8 21 CY8 C22 C22 C 0 1 N N N 51.581 13.412 51.117 -6.103 0.309 -1.010 C22 CY8 22 CY8 C23 C23 C 0 1 N N N 52.086 11.918 53.100 -6.023 -1.642 0.536 C23 CY8 23 CY8 C24 C24 C 0 1 N N N 44.918 4.795 47.394 5.275 -0.875 -1.478 C24 CY8 24 CY8 C25 C25 C 0 1 N N S 52.549 13.097 52.255 -6.833 -0.420 0.120 C25 CY8 25 CY8 C26 C26 C 0 1 N N N 49.487 4.401 46.105 3.505 1.821 1.753 C26 CY8 26 CY8 C27 C27 C 0 1 N N N 48.449 5.742 50.323 1.317 -1.977 1.017 C27 CY8 27 CY8 C28 C28 C 0 1 N N S 44.512 3.602 46.495 6.673 -0.403 -1.043 C28 CY8 28 CY8 C29 C29 C 0 1 N N N 45.632 2.548 46.323 6.825 -0.449 0.475 C29 CY8 29 CY8 C30 C30 C 0 1 N N N 43.261 2.904 47.023 7.729 -1.309 -1.680 C30 CY8 30 CY8 H1 H1 H 0 1 N N N 53.232 14.067 53.812 -8.693 -0.105 -0.618 H1 CY8 31 CY8 H2 H2 H 0 1 N N N 47.651 2.419 46.076 5.872 0.277 2.157 H2 CY8 32 CY8 H4 H4 H 0 1 N N N 51.742 9.480 49.922 -2.827 0.595 1.557 H4 CY8 33 CY8 H5 H5 H 0 1 N N N 48.996 10.454 49.044 -1.923 0.688 -1.380 H5 CY8 34 CY8 H6 H6 H 0 1 N N N 50.857 8.383 47.778 -0.622 1.945 1.108 H6 CY8 35 CY8 H7 H7 H 0 1 N N N 49.217 8.583 51.317 -1.469 -1.266 1.891 H7 CY8 36 CY8 H8 H8 H 0 1 N N N 50.777 7.726 51.077 -1.533 -1.749 0.170 H8 CY8 37 CY8 H9 H9 H 0 1 N N N 49.113 9.268 46.251 0.371 1.133 -1.693 H9 CY8 38 CY8 H10 H10 H 0 1 N N N 47.852 8.899 47.477 0.180 2.806 -1.105 H10 CY8 39 CY8 H11 H11 H 0 1 N N N 49.125 4.182 48.221 2.848 -0.192 2.224 H11 CY8 40 CY8 H12 H12 H 0 1 N N N 48.103 7.077 45.770 1.826 2.349 0.695 H12 CY8 41 CY8 H13 H13 H 0 1 N N N 49.812 6.870 46.284 2.532 2.106 -0.914 H13 CY8 42 CY8 H14 H14 H 0 1 N N N 51.739 10.595 47.703 -2.911 2.742 0.671 H14 CY8 43 CY8 H15 H15 H 0 1 N N N 50.235 11.458 47.235 -2.549 3.068 -1.048 H15 CY8 44 CY8 H16 H16 H 0 1 N N N 46.971 3.565 48.135 4.465 -1.366 0.995 H16 CY8 45 CY8 H17 H17 H 0 1 N N N 46.318 5.529 45.947 4.454 1.036 -0.944 H17 CY8 46 CY8 H18 H18 H 0 1 N N N 51.345 9.921 52.900 -4.129 -2.067 1.465 H18 CY8 47 CY8 H19 H19 H 0 1 N N N 52.689 10.341 51.786 -4.851 -0.514 1.944 H19 CY8 48 CY8 H20 H20 H 0 1 N N N 51.536 13.142 48.489 -4.966 2.563 -1.132 H20 CY8 49 CY8 H21 H21 H 0 1 N N N 49.427 12.183 52.347 -2.911 -2.288 -0.659 H21 CY8 50 CY8 H22 H22 H 0 1 N N N 48.640 11.512 50.879 -4.421 -1.883 -1.509 H22 CY8 51 CY8 H23 H23 H 0 1 N N N 48.980 10.444 52.283 -2.933 -0.968 -1.853 H23 CY8 52 CY8 H24 H24 H 0 1 N N N 52.062 14.135 50.442 -6.632 1.230 -1.253 H24 CY8 53 CY8 H25 H25 H 0 1 N N N 50.673 13.860 51.547 -6.059 -0.332 -1.891 H25 CY8 54 CY8 H26 H26 H 0 1 N N N 51.187 12.213 53.660 -5.853 -2.280 -0.332 H26 CY8 55 CY8 H27 H27 H 0 1 N N N 52.886 11.650 53.806 -6.575 -2.199 1.293 H27 CY8 56 CY8 H28 H28 H 0 1 N N N 44.212 5.626 47.247 5.137 -1.924 -1.214 H28 CY8 57 CY8 H29 H29 H 0 1 N N N 44.905 4.485 48.449 5.154 -0.743 -2.553 H29 CY8 58 CY8 H30 H30 H 0 1 N N N 53.536 12.864 51.828 -6.945 0.249 0.973 H30 CY8 59 CY8 H31 H31 H 0 1 N N N 50.487 4.839 46.242 2.607 2.267 2.181 H31 CY8 60 CY8 H32 H32 H 0 1 N N N 49.580 3.317 45.943 4.310 1.848 2.488 H32 CY8 61 CY8 H33 H33 H 0 1 N N N 49.002 4.862 45.232 3.803 2.381 0.867 H33 CY8 62 CY8 H34 H34 H 0 1 N N N 48.844 6.183 51.250 1.491 -2.010 2.092 H34 CY8 63 CY8 H35 H35 H 0 1 N N N 47.354 5.660 50.393 0.458 -2.600 0.768 H35 CY8 64 CY8 H36 H36 H 0 1 N N N 48.883 4.742 50.179 2.199 -2.350 0.495 H36 CY8 65 CY8 H37 H37 H 0 1 N N N 44.278 4.003 45.498 6.827 0.620 -1.385 H37 CY8 66 CY8 H38 H38 H 0 1 N N N 45.383 1.912 45.461 7.785 -0.012 0.749 H38 CY8 67 CY8 H39 H39 H 0 1 N N N 45.675 1.932 47.233 6.803 -1.489 0.802 H39 CY8 68 CY8 H40 H40 H 0 1 N N N 42.455 3.642 47.150 7.645 -1.256 -2.766 H40 CY8 69 CY8 H41 H41 H 0 1 N N N 42.942 2.133 46.307 8.722 -0.979 -1.376 H41 CY8 70 CY8 H42 H42 H 0 1 N N N 43.485 2.434 47.992 7.571 -2.337 -1.353 H42 CY8 71 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal CY8 N03 C29 SING N N 1 CY8 N03 C16 SING N N 2 CY8 C26 C12 SING N N 3 CY8 C29 C28 SING N N 4 CY8 C28 C30 SING N N 5 CY8 C28 C24 SING N N 6 CY8 C13 C11 SING N N 7 CY8 C13 C08 SING N N 8 CY8 C18 C16 SING N N 9 CY8 C18 C24 SING N N 10 CY8 C18 O01 SING N N 11 CY8 C11 C06 SING N N 12 CY8 C16 C12 SING N N 13 CY8 C12 C08 SING N N 14 CY8 C08 O01 SING N N 15 CY8 C08 C14 SING N N 16 CY8 C15 C05 SING N N 17 CY8 C15 C20 SING N N 18 CY8 C06 C05 SING N N 19 CY8 C06 C09 SING N N 20 CY8 C05 C04 SING N N 21 CY8 C20 C17 DOUB N N 22 CY8 C14 C09 DOUB N N 23 CY8 C14 C27 SING N N 24 CY8 C09 C10 SING N N 25 CY8 C04 C10 SING N N 26 CY8 C04 C07 SING N N 27 CY8 C17 C07 SING N N 28 CY8 C17 C22 SING N N 29 CY8 C07 C21 SING N N 30 CY8 C07 C19 SING N N 31 CY8 C22 C25 SING N N 32 CY8 C19 C23 SING N N 33 CY8 C25 O02 SING N N 34 CY8 C25 C23 SING N N 35 CY8 O02 H1 SING N N 36 CY8 N03 H2 SING N N 37 CY8 C04 H4 SING N N 38 CY8 C05 H5 SING N N 39 CY8 C06 H6 SING N N 40 CY8 C10 H7 SING N N 41 CY8 C10 H8 SING N N 42 CY8 C11 H9 SING N N 43 CY8 C11 H10 SING N N 44 CY8 C12 H11 SING N N 45 CY8 C13 H12 SING N N 46 CY8 C13 H13 SING N N 47 CY8 C15 H14 SING N N 48 CY8 C15 H15 SING N N 49 CY8 C16 H16 SING N N 50 CY8 C18 H17 SING N N 51 CY8 C19 H18 SING N N 52 CY8 C19 H19 SING N N 53 CY8 C20 H20 SING N N 54 CY8 C21 H21 SING N N 55 CY8 C21 H22 SING N N 56 CY8 C21 H23 SING N N 57 CY8 C22 H24 SING N N 58 CY8 C22 H25 SING N N 59 CY8 C23 H26 SING N N 60 CY8 C23 H27 SING N N 61 CY8 C24 H28 SING N N 62 CY8 C24 H29 SING N N 63 CY8 C25 H30 SING N N 64 CY8 C26 H31 SING N N 65 CY8 C26 H32 SING N N 66 CY8 C26 H33 SING N N 67 CY8 C27 H34 SING N N 68 CY8 C27 H35 SING N N 69 CY8 C27 H36 SING N N 70 CY8 C28 H37 SING N N 71 CY8 C29 H38 SING N N 72 CY8 C29 H39 SING N N 73 CY8 C30 H40 SING N N 74 CY8 C30 H41 SING N N 75 CY8 C30 H42 SING N N 76 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor CY8 SMILES ACDLabs 12.01 "OC6CC5=CCC4C(CC3=C(C1(OC2CC(CNC2C1C)C)CCC34)C)C5(C)CC6" CY8 InChI InChI 1.03 "InChI=1S/C27H41NO2/c1-15-11-24-25(28-14-15)17(3)27(30-24)10-8-20-21-6-5-18-12-19(29)7-9-26(18,4)23(21)13-22(20)16(27)2/h5,15,17,19-21,23-25,28-29H,6-14H2,1-4H3/t15-,17+,19-,20-,21-,23-,24+,25-,26-,27-/m0/s1" CY8 InChIKey InChI 1.03 QASFUMOKHFSJGL-LAFRSMQTSA-N CY8 SMILES_CANONICAL CACTVS 3.385 "C[C@@H]1CN[C@H]2[C@@H](C)[C@@]3(CC[C@H]4[C@@H]5CC=C6C[C@@H](O)CC[C@]6(C)[C@H]5CC4=C3C)O[C@@H]2C1" CY8 SMILES CACTVS 3.385 "C[CH]1CN[CH]2[CH](C)[C]3(CC[CH]4[CH]5CC=C6C[CH](O)CC[C]6(C)[CH]5CC4=C3C)O[CH]2C1" CY8 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C[C@H]1C[C@@H]2[C@H]([C@H]([C@]3(O2)CC[C@H]4[C@@H]5CC=C6C[C@H](CC[C@@]6([C@H]5CC4=C3C)C)O)C)NC1" CY8 SMILES "OpenEye OEToolkits" 1.7.6 "CC1CC2C(C(C3(O2)CCC4C5CC=C6CC(CCC6(C5CC4=C3C)C)O)C)NC1" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier CY8 "SYSTEMATIC NAME" ACDLabs 12.01 "(3alpha,8alpha,14beta,22S,23R)-17,23-epoxyveratraman-3-ol" CY8 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(3S,3'R,3'aS,6'S,6aS,6bS,7'aR,9R,11aS,11bR)-3',6',10,11b-tetramethylspiro[2,3,4,6,6a,6b,7,8,11,11a-decahydro-1H-benzo[a]fluorene-9,2'-3a,4,5,6,7,7a-hexahydro-3H-furo[3,2-b]pyridine]-3-ol" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site CY8 "Create component" 2014-01-07 RCSB CY8 "Initial release" 2014-03-05 RCSB CY8 "Modify synonyms" 2021-03-13 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id CY8 _pdbx_chem_comp_synonyms.name "(3alpha,8alpha,14beta,22S,23R)-17,23-epoxyveratraman-3-ol" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? ##