data_CY9 # _chem_comp.id CY9 _chem_comp.name "(3S,3aR,4S,6S,6aR,7E,10S,12R,13E,15R,15aR)-3-benzyl-6,12-dihydroxy-4,10,12-trimethyl-5-methylidene-1,11-dioxo-2,3,3a,4,5,6,6a,9,10,11,12,15-dodecahydro-1H-cycloundeca[d]isoindol-15-yl acetate" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C30 H37 N O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "Cytochalasin D" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2008-09-25 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 507.618 _chem_comp.one_letter_code ? _chem_comp.three_letter_code CY9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3EKS _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal CY9 C1 C1 C 0 1 N N N 159.753 -16.491 31.326 159.753 -16.491 31.326 C1 CY9 1 CY9 C5 C5 C 0 1 N N S 157.034 -14.931 29.815 157.034 -14.931 29.815 C5 CY9 2 CY9 C4 C4 C 0 1 N N R 157.572 -16.273 30.319 157.572 -16.273 30.319 C4 CY9 3 CY9 C3 C3 C 0 1 N N S 158.616 -16.842 29.353 158.616 -16.842 29.353 C3 CY9 4 CY9 O1 O1 O 0 1 N N N 160.691 -16.375 32.115 160.691 -16.375 32.115 O1 CY9 5 CY9 C6 C6 C 0 1 N N N 158.175 -13.918 29.891 158.175 -13.918 29.891 C6 CY9 6 CY9 C25 C25 C 0 1 Y N N 157.191 -18.037 26.650 157.191 -18.037 26.650 C25 CY9 7 CY9 C26 C26 C 0 1 Y N N 156.120 -18.190 25.778 156.120 -18.190 25.778 C26 CY9 8 CY9 C27 C27 C 0 1 Y N N 154.914 -18.700 26.246 154.914 -18.700 26.246 C27 CY9 9 CY9 C28 C28 C 0 1 Y N N 154.778 -19.055 27.583 154.778 -19.055 27.583 C28 CY9 10 CY9 C29 C29 C 0 1 Y N N 155.849 -18.902 28.456 155.849 -18.902 28.456 C29 CY9 11 CY9 C24 C24 C 0 1 Y N N 157.057 -18.395 27.988 157.057 -18.395 27.988 C24 CY9 12 CY9 C10 C10 C 0 1 N N N 158.255 -18.267 28.929 158.255 -18.267 28.929 C10 CY9 13 CY9 N2 N2 N 0 1 N N N 159.906 -16.864 30.059 159.906 -16.864 30.059 N2 CY9 14 CY9 C9 C9 C 0 1 N N R 158.300 -16.149 31.663 158.300 -16.149 31.663 C9 CY9 15 CY9 C11 C11 C 0 1 N N N 156.508 -15.041 28.382 156.508 -15.041 28.382 C11 CY9 16 CY9 C12 C12 C 0 1 N N N 158.653 -13.253 28.768 158.653 -13.253 28.768 C12 CY9 17 CY9 C7 C7 C 0 1 N N S 158.818 -13.703 31.260 158.818 -13.703 31.260 C7 CY9 18 CY9 O7 O7 O 0 1 N N N 158.505 -12.381 31.706 158.505 -12.381 31.706 O7 CY9 19 CY9 C8 C8 C 0 1 N N R 158.228 -14.727 32.233 158.228 -14.727 32.233 C8 CY9 20 CY9 C13 C13 C 0 1 N N N 158.994 -14.587 33.552 158.994 -14.587 33.552 C13 CY9 21 CY9 C14 C14 C 0 1 N N N 158.396 -13.960 34.639 158.396 -13.960 34.639 C14 CY9 22 CY9 C15 C15 C 0 1 N N N 159.079 -13.806 35.842 159.079 -13.806 35.842 C15 CY9 23 CY9 C16 C16 C 0 1 N N S 158.853 -14.953 36.828 158.853 -14.953 36.828 C16 CY9 24 CY9 C22 C22 C 0 1 N N N 159.298 -14.554 38.237 159.298 -14.554 38.237 C22 CY9 25 CY9 C17 C17 C 0 1 N N N 159.625 -16.201 36.392 159.625 -16.201 36.392 C17 CY9 26 CY9 O17 O17 O 0 1 N N N 160.852 -16.180 36.305 160.852 -16.180 36.305 O17 CY9 27 CY9 C18 C18 C 0 1 N N R 158.854 -17.485 36.085 158.854 -17.485 36.085 C18 CY9 28 CY9 O18 O18 O 0 1 N N N 159.787 -18.520 35.761 159.787 -18.520 35.761 O18 CY9 29 CY9 C23 C23 C 0 1 N N N 158.024 -17.874 37.310 158.024 -17.874 37.310 C23 CY9 30 CY9 C19 C19 C 0 1 N N N 158.021 -17.236 35.000 158.021 -17.236 35.000 C19 CY9 31 CY9 C20 C20 C 0 1 N N N 158.493 -17.435 33.708 158.493 -17.435 33.708 C20 CY9 32 CY9 C21 C21 C 0 1 N N R 157.679 -17.182 32.609 157.679 -17.182 32.609 C21 CY9 33 CY9 O21 O21 O 0 1 N N N 156.395 -16.712 33.043 156.395 -16.712 33.043 O21 CY9 34 CY9 C30 C30 C 0 1 N N N 155.426 -17.638 32.813 155.426 -17.638 32.813 C30 CY9 35 CY9 C31 C31 C 0 1 N N N 154.103 -17.338 33.118 154.103 -17.338 33.118 C31 CY9 36 CY9 O30 O30 O 0 1 N N N 155.708 -18.726 32.313 155.708 -18.726 32.313 O30 CY9 37 CY9 H5 H5 H 0 1 N N N 156.188 -14.611 30.440 156.188 -14.611 30.440 H5 CY9 38 CY9 H4 H4 H 0 1 N N N 156.686 -16.918 30.411 156.686 -16.918 30.411 H4 CY9 39 CY9 H3 H3 H 0 1 N N N 158.660 -16.218 28.448 158.660 -16.218 28.448 H3 CY9 40 CY9 H25 H25 H 0 1 N N N 158.128 -17.640 26.289 158.128 -17.640 26.289 H25 CY9 41 CY9 H26 H26 H 0 1 N N N 156.224 -17.913 24.739 156.224 -17.913 24.739 H26 CY9 42 CY9 H27 H27 H 0 1 N N N 154.081 -18.821 25.569 154.081 -18.821 25.569 H27 CY9 43 CY9 H28 H28 H 0 1 N N N 153.840 -19.450 27.944 153.840 -19.450 27.944 H28 CY9 44 CY9 H29 H29 H 0 1 N N N 155.743 -19.176 29.495 155.743 -19.176 29.495 H29 CY9 45 CY9 H10 H10 H 0 1 N N N 159.129 -18.688 28.410 159.129 -18.688 28.410 H10 CY9 46 CY9 H10A H10A H 0 0 N N N 157.974 -18.796 29.852 157.974 -18.796 29.851 H10A CY9 47 CY9 HN2 HN2 H 0 1 N N N 160.778 -17.124 29.644 160.778 -17.124 29.643 HN2 CY9 48 CY9 H11 H11 H 0 1 N N N 155.408 -15.067 28.395 155.408 -15.067 28.396 H11 CY9 49 CY9 H11A H11A H 0 0 N N N 156.847 -14.171 27.800 156.847 -14.172 27.799 H11A CY9 50 CY9 H11B H11B H 0 0 N N N 156.891 -15.963 27.921 156.891 -15.963 27.921 H11B CY9 51 CY9 H12 H12 H 0 1 N N N 159.452 -12.599 29.086 159.452 -12.599 29.086 H12 CY9 52 CY9 H12A H12A H 0 0 N N N 158.290 -13.369 27.757 158.290 -13.369 27.757 H12A CY9 53 CY9 H7 H7 H 0 1 N N N 159.910 -13.825 31.205 159.910 -13.825 31.205 H7 CY9 54 CY9 HO7 HO7 H 0 1 N N N 158.436 -12.374 32.653 158.436 -12.374 32.653 HO7 CY9 55 CY9 H8 H8 H 0 1 N N N 157.158 -14.536 32.401 157.158 -14.535 32.401 H8 CY9 56 CY9 H13 H13 H 0 1 N N N 159.998 -14.975 33.637 159.998 -14.975 33.637 H13 CY9 57 CY9 H14 H14 H 0 1 N N N 157.387 -13.587 34.549 157.387 -13.587 34.549 H14 CY9 58 CY9 H15 H15 H 0 1 N N N 160.155 -13.754 35.620 160.155 -13.754 35.620 H15 CY9 59 CY9 H15A H15A H 0 0 N N N 158.696 -12.890 36.317 158.697 -12.891 36.317 H15A CY9 60 CY9 H16 H16 H 0 1 N N N 157.776 -15.176 36.838 157.776 -15.176 36.838 H16 CY9 61 CY9 H22 H22 H 0 1 N N N 160.394 -14.458 38.263 160.393 -14.458 38.263 H22 CY9 62 CY9 H22A H22A H 0 0 N N N 158.840 -13.591 38.507 158.839 -13.591 38.507 H22A CY9 63 CY9 H22B H22B H 0 0 N N N 158.981 -15.326 38.954 158.981 -15.326 38.954 H22B CY9 64 CY9 HO18 HO18 H 0 0 N N N 159.994 -18.482 34.835 159.994 -18.482 34.835 HO18 CY9 65 CY9 H23 H23 H 0 1 N N N 158.683 -17.967 38.186 158.683 -17.967 38.186 H23 CY9 66 CY9 H23A H23A H 0 0 N N N 157.268 -17.098 37.502 157.268 -17.098 37.502 H23A CY9 67 CY9 H23B H23B H 0 0 N N N 157.524 -18.836 37.123 157.524 -18.836 37.124 H23B CY9 68 CY9 H19 H19 H 0 1 N N N 157.011 -16.889 35.161 157.011 -16.889 35.161 H19 CY9 69 CY9 H20 H20 H 0 1 N N N 159.502 -17.790 33.556 159.502 -17.790 33.556 H20 CY9 70 CY9 H21 H21 H 0 1 N N N 157.569 -18.129 32.060 157.569 -18.129 32.060 H21 CY9 71 CY9 H31 H31 H 0 1 N N N 153.987 -17.259 34.209 153.987 -17.259 34.209 H31 CY9 72 CY9 H31A H31A H 0 0 N N N 153.827 -16.382 32.650 153.827 -16.382 32.650 H31A CY9 73 CY9 H31B H31B H 0 0 N N N 153.449 -18.136 32.737 153.449 -18.136 32.737 H31B CY9 74 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal CY9 C1 O1 DOUB N N 1 CY9 C1 N2 SING N N 2 CY9 C1 C9 SING N N 3 CY9 C5 C4 SING N N 4 CY9 C5 C6 SING N N 5 CY9 C5 C11 SING N N 6 CY9 C4 C3 SING N N 7 CY9 C4 C9 SING N N 8 CY9 C3 C10 SING N N 9 CY9 C3 N2 SING N N 10 CY9 C6 C12 DOUB N N 11 CY9 C6 C7 SING N N 12 CY9 C25 C26 DOUB Y N 13 CY9 C25 C24 SING Y N 14 CY9 C26 C27 SING Y N 15 CY9 C27 C28 DOUB Y N 16 CY9 C28 C29 SING Y N 17 CY9 C29 C24 DOUB Y N 18 CY9 C24 C10 SING N N 19 CY9 C9 C8 SING N N 20 CY9 C9 C21 SING N N 21 CY9 C7 O7 SING N N 22 CY9 C7 C8 SING N N 23 CY9 C8 C13 SING N N 24 CY9 C13 C14 DOUB N N 25 CY9 C14 C15 SING N N 26 CY9 C15 C16 SING N N 27 CY9 C16 C22 SING N N 28 CY9 C16 C17 SING N N 29 CY9 C17 O17 DOUB N N 30 CY9 C17 C18 SING N N 31 CY9 C18 O18 SING N N 32 CY9 C18 C23 SING N N 33 CY9 C18 C19 SING N N 34 CY9 C19 C20 DOUB N N 35 CY9 C20 C21 SING N N 36 CY9 C21 O21 SING N N 37 CY9 O21 C30 SING N N 38 CY9 C30 C31 SING N N 39 CY9 C30 O30 DOUB N N 40 CY9 C5 H5 SING N N 41 CY9 C4 H4 SING N N 42 CY9 C3 H3 SING N N 43 CY9 C25 H25 SING N E 44 CY9 C26 H26 SING N N 45 CY9 C27 H27 SING N N 46 CY9 C28 H28 SING N N 47 CY9 C29 H29 SING N N 48 CY9 C10 H10 SING N N 49 CY9 C10 H10A SING N N 50 CY9 N2 HN2 SING N N 51 CY9 C11 H11 SING N N 52 CY9 C11 H11A SING N N 53 CY9 C11 H11B SING N N 54 CY9 C12 H12 SING N N 55 CY9 C12 H12A SING N N 56 CY9 C7 H7 SING N N 57 CY9 O7 HO7 SING N N 58 CY9 C8 H8 SING N N 59 CY9 C13 H13 SING N N 60 CY9 C14 H14 SING N N 61 CY9 C15 H15 SING N N 62 CY9 C15 H15A SING N N 63 CY9 C16 H16 SING N N 64 CY9 C22 H22 SING N N 65 CY9 C22 H22A SING N E 66 CY9 C22 H22B SING N N 67 CY9 O18 HO18 SING N N 68 CY9 C23 H23 SING N N 69 CY9 C23 H23A SING N N 70 CY9 C23 H23B SING N N 71 CY9 C19 H19 SING N N 72 CY9 C20 H20 SING N N 73 CY9 C21 H21 SING N N 74 CY9 C31 H31 SING N N 75 CY9 C31 H31A SING N N 76 CY9 C31 H31B SING N N 77 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor CY9 SMILES ACDLabs 10.04 "O=C1NC(C3C12C(C=CCC(C(=O)C(O)(C=CC2OC(=O)C)C)C)C(O)/C(=C)C3C)Cc4ccccc4" CY9 SMILES_CANONICAL CACTVS 3.341 "C[C@H]1C/C=C/[C@H]2[C@H](O)C(=C)[C@@H](C)[C@H]3[C@H](Cc4ccccc4)NC(=O)[C@@]23[C@H](OC(C)=O)/C=C/[C@@](C)(O)C1=O" CY9 SMILES CACTVS 3.341 "C[CH]1CC=C[CH]2[CH](O)C(=C)[CH](C)[CH]3[CH](Cc4ccccc4)NC(=O)[C]23[CH](OC(C)=O)C=C[C](C)(O)C1=O" CY9 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C[C@H]1C\C=C\[C@H]2[C@@H](C(=C)[C@H]([C@@H]3[C@@]2([C@@H](\C=C\[C@@](C1=O)(C)O)OC(=O)C)C(=O)N[C@H]3Cc4ccccc4)C)O" CY9 SMILES "OpenEye OEToolkits" 1.5.0 "CC1CC=CC2C(C(=C)C(C3C2(C(C=CC(C1=O)(C)O)OC(=O)C)C(=O)NC3Cc4ccccc4)C)O" CY9 InChI InChI 1.03 "InChI=1S/C30H37NO6/c1-17-10-9-13-22-26(33)19(3)18(2)25-23(16-21-11-7-6-8-12-21)31-28(35)30(22,25)24(37-20(4)32)14-15-29(5,36)27(17)34/h6-9,11-15,17-18,22-26,33,36H,3,10,16H2,1-2,4-5H3,(H,31,35)/b13-9+,15-14+/t17-,18+,22-,23-,24+,25-,26+,29+,30+/m0/s1" CY9 InChIKey InChI 1.03 SDZRWUKZFQQKKV-JHADDHBZSA-N # _pdbx_chem_comp_identifier.comp_id CY9 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program ACDLabs _pdbx_chem_comp_identifier.program_version 10.04 _pdbx_chem_comp_identifier.identifier "(3S,3aR,4S,6S,6aR,7E,10S,12R,13E,15R,15aR)-3-benzyl-6,12-dihydroxy-4,10,12-trimethyl-5-methylidene-1,11-dioxo-2,3,3a,4,5,6,6a,9,10,11,12,15-dodecahydro-1H-cycloundeca[d]isoindol-15-yl acetate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site CY9 "Create component" 2008-09-25 RCSB CY9 "Modify aromatic_flag" 2011-06-04 RCSB CY9 "Modify descriptor" 2011-06-04 RCSB CY9 "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id CY9 _pdbx_chem_comp_synonyms.name "Cytochalasin D" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##