data_CYB # _chem_comp.id CYB _chem_comp.name PHYCOUROBILIN _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C32 H40 N4 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 576.683 _chem_comp.one_letter_code ? _chem_comp.three_letter_code CYB _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal CYB CHA CHA C 0 1 N N N 36.362 17.714 44.866 0.048 0.542 2.102 CHA CYB 1 CYB NA "N A" N 0 1 N N N 36.808 15.300 44.452 -1.581 -0.151 0.411 NA CYB 2 CYB C1A C1A C 0 1 N N N 36.604 16.401 45.305 -1.250 0.347 1.618 C1A CYB 3 CYB C2A C2A C 0 1 N N N 36.649 15.954 46.652 -2.448 0.631 2.311 C2A CYB 4 CYB C3A C3A C 0 1 N N N 36.818 14.519 46.614 -3.469 0.292 1.469 C3A CYB 5 CYB C4A C4A C 0 1 N N N 37.146 14.202 45.261 -2.889 -0.195 0.296 C4A CYB 6 CYB CMA CMA C 0 1 N N N 36.659 13.537 47.768 -4.943 0.415 1.755 CMA CYB 7 CYB CAA CAA C 0 1 N N N 36.517 16.814 47.894 -2.575 1.204 3.699 CAA CYB 8 CYB CBA CBA C 0 1 N N N 35.112 16.778 48.470 -2.627 0.064 4.718 CBA CYB 9 CYB CGA CGA C 0 1 N N N 34.773 17.840 49.512 -2.754 0.637 6.107 CGA CYB 10 CYB O1A O1A O 0 1 N N N 34.082 17.498 50.480 -2.798 1.834 6.264 O1A CYB 11 CYB O2A O2A O 0 1 N N N 35.202 19.232 49.375 -2.818 -0.181 7.168 O2A CYB 12 CYB CHB CHB C 0 1 N N N 37.539 12.958 44.680 -3.644 -0.692 -0.910 CHB CYB 13 CYB NB "N B" N 0 1 N N N 39.405 12.295 46.272 -1.994 0.220 -2.489 NB CYB 14 CYB C1B C1B C 0 1 N N S 38.554 12.050 45.144 -2.656 -1.009 -2.034 C1B CYB 15 CYB C2B C2B C 0 1 N N N 38.972 10.817 44.541 -3.392 -1.551 -3.237 C2B CYB 16 CYB C3B C3B C 0 1 N N N 39.743 10.207 45.615 -3.162 -0.711 -4.243 C3B CYB 17 CYB C4B C4B C 0 1 N N N 39.828 11.097 46.690 -2.300 0.384 -3.789 C4B CYB 18 CYB CMB CMB C 0 1 N N N 38.612 10.288 43.152 -4.229 -2.804 -3.288 CMB CYB 19 CYB CAB CAB C 0 1 N N N 40.160 8.804 46.080 -3.707 -0.864 -5.640 CAB CYB 20 CYB CBB CBB C 0 1 N N N 40.724 8.027 44.901 -5.057 -0.151 -5.743 CBB CYB 21 CYB OB "O B" O 0 1 N N N 40.155 10.840 47.853 -1.917 1.304 -4.486 OB CYB 22 CYB NC "N C" N 0 1 N N N 39.158 19.113 39.330 2.381 1.472 -2.679 NC CYB 23 CYB C1C C1C C 0 1 N N N 39.454 19.730 38.187 2.238 1.697 -3.999 C1C CYB 24 CYB C2C C2C C 0 1 N N N 38.920 18.973 37.128 3.145 0.828 -4.757 C2C CYB 25 CYB C3C C3C C 0 1 N N N 38.186 17.863 37.678 3.846 0.070 -3.920 C3C CYB 26 CYB C4C C4C C 0 1 N N S 38.155 18.115 39.068 3.400 0.426 -2.521 C4C CYB 27 CYB CAC CAC C 0 1 N N N 37.251 16.832 37.039 4.884 -0.955 -4.295 CAC CYB 28 CYB CBC CBC C 0 1 N N N 37.901 16.013 36.591 6.260 -0.288 -4.360 CBC CYB 29 CYB OC "O C" O 0 1 N N N 40.100 20.778 38.116 1.470 2.501 -4.491 OC CYB 30 CYB CHD CHD C 0 1 N N N 37.142 17.639 39.980 2.798 -0.794 -1.821 CHD CYB 31 CYB ND "N D" N 0 1 Y N N 36.259 17.381 42.346 1.134 -0.110 -0.031 ND CYB 32 CYB C1D C1D C 0 1 Y N N 36.856 18.144 41.293 2.387 -0.418 -0.421 C1D CYB 33 CYB C2D C2D C 0 1 Y N N 36.789 19.513 41.678 3.220 -0.342 0.650 C2D CYB 34 CYB C3D C3D C 0 1 Y N N 36.830 19.505 43.120 2.465 0.037 1.756 C3D CYB 35 CYB C4D C4D C 0 1 Y N N 36.469 18.165 43.516 1.149 0.177 1.318 C4D CYB 36 CYB CMD CMD C 0 1 N N N 36.608 20.691 40.737 4.703 -0.611 0.641 CMD CYB 37 CYB CAD CAD C 0 1 N N N 37.243 20.678 44.031 2.972 0.249 3.159 CAD CYB 38 CYB CBD CBD C 0 1 N N N 38.715 20.639 44.503 2.895 -1.067 3.934 CBD CYB 39 CYB CGD CGD C 0 1 N N N 39.722 21.393 43.624 3.402 -0.855 5.337 CGD CYB 40 CYB O1D O1D O 0 1 N N N 39.547 21.413 42.412 3.785 0.237 5.682 O1D CYB 41 CYB O2D O2D O 0 1 N N N 40.889 22.110 44.098 3.427 -1.880 6.204 O2D CYB 42 CYB HHA HHA H 0 1 N N N 36.066 18.444 45.638 0.201 0.975 3.080 HHA CYB 43 CYB HMA1 1HMA H 0 0 N N N 35.639 13.714 48.182 -5.511 0.061 0.895 HMA1 CYB 44 CYB HMA2 2HMA H 0 0 N N N 36.789 12.430 47.739 -5.196 -0.184 2.629 HMA2 CYB 45 CYB HMA3 3HMA H 0 0 N N N 37.334 13.903 48.576 -5.190 1.460 1.948 HMA3 CYB 46 CYB HAA1 1HAA H 0 0 N N N 36.845 17.861 47.696 -1.715 1.840 3.909 HAA1 CYB 47 CYB HAA2 2HAA H 0 0 N N N 37.275 16.533 48.662 -3.488 1.794 3.767 HAA2 CYB 48 CYB HBA1 1HBA H 0 0 N N N 34.904 15.765 48.887 -3.487 -0.571 4.508 HBA1 CYB 49 CYB HBA2 2HBA H 0 0 N N N 34.367 16.815 47.642 -1.714 -0.525 4.651 HBA2 CYB 50 CYB H2A H2A H 0 1 N N N 34.991 19.893 50.024 -2.900 0.185 8.058 H2A CYB 51 CYB HHB1 1HHB H 0 0 N N N 37.798 13.186 43.620 -4.196 -1.594 -0.646 HHB1 CYB 52 CYB HHB2 2HHB H 0 0 N N N 36.606 12.353 44.597 -4.341 0.075 -1.244 HHB2 CYB 53 CYB HB "H B" H 0 1 N N N 39.667 13.179 46.707 -1.440 0.807 -1.951 HB CYB 54 CYB H1B H1B H 0 1 N N N 37.520 12.381 44.891 -1.914 -1.730 -1.691 H1B CYB 55 CYB HMB1 1HMB H 0 0 N N N 38.902 11.091 42.435 -4.632 -2.930 -4.293 HMB1 CYB 56 CYB HMB2 2HMB H 0 0 N N N 38.937 9.330 42.683 -3.610 -3.664 -3.034 HMB2 CYB 57 CYB HMB3 3HMB H 0 0 N N N 37.498 10.288 43.106 -5.049 -2.722 -2.575 HMB3 CYB 58 CYB HAB1 1HAB H 0 0 N N N 39.326 8.261 46.583 -3.009 -0.423 -6.352 HAB1 CYB 59 CYB HAB2 2HAB H 0 0 N N N 40.869 8.838 46.940 -3.836 -1.922 -5.866 HAB2 CYB 60 CYB HBB1 1HBB H 0 0 N N N 41.558 8.570 44.399 -5.450 -0.262 -6.753 HBB1 CYB 61 CYB HBB2 2HBB H 0 0 N N N 41.027 7.008 45.239 -5.755 -0.592 -5.031 HBB2 CYB 62 CYB HBB3 3HBB H 0 0 N N N 40.015 7.993 44.041 -4.927 0.906 -5.517 HBB3 CYB 63 CYB HC "H C" H 0 1 N N N 39.604 19.353 40.216 1.898 1.916 -1.965 HC CYB 64 CYB H2C H2C H 0 1 N N N 39.053 19.208 36.059 3.230 0.807 -5.833 H2C CYB 65 CYB H4C H4C H 0 1 N N N 38.078 17.295 39.820 4.245 0.808 -1.948 H4C CYB 66 CYB HAC1 1HAC H 0 0 N N N 36.548 17.282 36.300 4.640 -1.380 -5.269 HAC1 CYB 67 CYB HAC2 2HAC H 0 0 N N N 36.486 16.440 37.749 4.900 -1.747 -3.547 HAC2 CYB 68 CYB HBC1 1HBC H 0 0 N N N 38.605 15.563 37.330 7.011 -1.030 -4.632 HBC1 CYB 69 CYB HBC2 2HBC H 0 0 N N N 37.220 15.262 36.126 6.244 0.504 -5.109 HBC2 CYB 70 CYB HBC3 3HBC H 0 0 N N N 38.667 16.405 35.881 6.504 0.136 -3.387 HBC3 CYB 71 CYB HHD1 1HHD H 0 0 N N N 37.327 16.546 40.103 1.925 -1.137 -2.377 HHD1 CYB 72 CYB HHD2 2HHD H 0 0 N N N 36.179 17.676 39.419 3.540 -1.591 -1.780 HHD2 CYB 73 CYB HD "H D" H 0 1 N N N 35.788 16.479 42.278 0.351 -0.094 -0.604 HD CYB 74 CYB HMD1 1HMD H 0 0 N N N 35.687 20.484 40.144 4.882 -1.664 0.856 HMD1 CYB 75 CYB HMD2 2HMD H 0 0 N N N 36.556 21.763 41.039 5.110 -0.366 -0.339 HMD2 CYB 76 CYB HMD3 3HMD H 0 0 N N N 37.420 20.616 39.976 5.188 0.002 1.399 HMD3 CYB 77 CYB HAD1 1HAD H 0 0 N N N 36.557 20.749 44.907 4.006 0.590 3.124 HAD1 CYB 78 CYB HAD2 2HAD H 0 0 N N N 37.021 21.651 43.534 2.358 1.000 3.657 HAD2 CYB 79 CYB HBD1 1HBD H 0 0 N N N 39.043 19.581 44.633 1.860 -1.408 3.969 HBD1 CYB 80 CYB HBD2 2HBD H 0 0 N N N 38.785 21.001 45.555 3.508 -1.818 3.436 HBD2 CYB 81 CYB H2D H2D H 0 1 N N N 41.512 22.577 43.554 3.752 -1.743 7.104 H2D CYB 82 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal CYB CHA C1A DOUB N Z 1 CYB CHA C4D SING N N 2 CYB CHA HHA SING N N 3 CYB NA C1A SING N N 4 CYB NA C4A DOUB N N 5 CYB C1A C2A SING N N 6 CYB C2A C3A DOUB N N 7 CYB C2A CAA SING N N 8 CYB C3A C4A SING N N 9 CYB C3A CMA SING N N 10 CYB C4A CHB SING N N 11 CYB CMA HMA1 SING N N 12 CYB CMA HMA2 SING N N 13 CYB CMA HMA3 SING N N 14 CYB CAA CBA SING N N 15 CYB CAA HAA1 SING N N 16 CYB CAA HAA2 SING N N 17 CYB CBA CGA SING N N 18 CYB CBA HBA1 SING N N 19 CYB CBA HBA2 SING N N 20 CYB CGA O1A DOUB N N 21 CYB CGA O2A SING N N 22 CYB O2A H2A SING N N 23 CYB CHB C1B SING N N 24 CYB CHB HHB1 SING N N 25 CYB CHB HHB2 SING N N 26 CYB NB C1B SING N N 27 CYB NB C4B SING N N 28 CYB NB HB SING N N 29 CYB C1B C2B SING N N 30 CYB C1B H1B SING N N 31 CYB C2B C3B DOUB N N 32 CYB C2B CMB SING N N 33 CYB C3B C4B SING N N 34 CYB C3B CAB SING N N 35 CYB C4B OB DOUB N N 36 CYB CMB HMB1 SING N N 37 CYB CMB HMB2 SING N N 38 CYB CMB HMB3 SING N N 39 CYB CAB CBB SING N N 40 CYB CAB HAB1 SING N N 41 CYB CAB HAB2 SING N N 42 CYB CBB HBB1 SING N N 43 CYB CBB HBB2 SING N N 44 CYB CBB HBB3 SING N N 45 CYB NC C1C SING N N 46 CYB NC C4C SING N N 47 CYB NC HC SING N N 48 CYB C1C C2C SING N N 49 CYB C1C OC DOUB N N 50 CYB C2C C3C DOUB N N 51 CYB C2C H2C SING N N 52 CYB C3C C4C SING N N 53 CYB C3C CAC SING N N 54 CYB C4C CHD SING N N 55 CYB C4C H4C SING N N 56 CYB CAC CBC SING N N 57 CYB CAC HAC1 SING N N 58 CYB CAC HAC2 SING N N 59 CYB CBC HBC1 SING N N 60 CYB CBC HBC2 SING N N 61 CYB CBC HBC3 SING N N 62 CYB CHD C1D SING N N 63 CYB CHD HHD1 SING N N 64 CYB CHD HHD2 SING N N 65 CYB ND C1D SING Y N 66 CYB ND C4D SING Y N 67 CYB ND HD SING N N 68 CYB C1D C2D DOUB Y N 69 CYB C2D C3D SING Y N 70 CYB C2D CMD SING N N 71 CYB C3D C4D DOUB Y N 72 CYB C3D CAD SING N N 73 CYB CMD HMD1 SING N N 74 CYB CMD HMD2 SING N N 75 CYB CMD HMD3 SING N N 76 CYB CAD CBD SING N N 77 CYB CAD HAD1 SING N N 78 CYB CAD HAD2 SING N N 79 CYB CBD CGD SING N N 80 CYB CBD HBD1 SING N N 81 CYB CBD HBD2 SING N N 82 CYB CGD O1D DOUB N N 83 CYB CGD O2D SING N N 84 CYB O2D H2D SING N N 85 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor CYB SMILES_CANONICAL CACTVS 3.341 "CCC1=CC(=O)N[C@H]1Cc2[nH]c(\C=C3/N=C(C[C@@H]4NC(=O)C(=C4C)CC)C(=C3CCC(O)=O)C)c(CCC(O)=O)c2C" CYB SMILES CACTVS 3.341 "CCC1=CC(=O)N[CH]1Cc2[nH]c(C=C3N=C(C[CH]4NC(=O)C(=C4C)CC)C(=C3CCC(O)=O)C)c(CCC(O)=O)c2C" CYB SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CCC1=CC(=O)NC1Cc2c(c(c([nH]2)\C=C/3\C(=C(C(=N3)CC4C(=C(C(=O)N4)CC)C)C)CCC(=O)O)CCC(=O)O)C" CYB SMILES "OpenEye OEToolkits" 1.5.0 "CCC1=CC(=O)NC1Cc2c(c(c([nH]2)C=C3C(=C(C(=N3)CC4C(=C(C(=O)N4)CC)C)C)CCC(=O)O)CCC(=O)O)C" CYB InChI InChI 1.03 "InChI=1S/C32H40N4O6/c1-6-19-12-29(37)35-26(19)14-24-18(5)22(9-11-31(40)41)28(34-24)15-27-21(8-10-30(38)39)17(4)23(33-27)13-25-16(3)20(7-2)32(42)36-25/h12,15,25-26,34H,6-11,13-14H2,1-5H3,(H,35,37)(H,36,42)(H,38,39)(H,40,41)/b27-15-/t25-,26-/m0/s1" CYB InChIKey InChI 1.03 MDIUQMZLLDXBIH-PIKPBIHPSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier CYB "SYSTEMATIC NAME" ACD-LABS 4.04 "3-(2-[(Z)-(3-(2-carboxyethyl)-5-{[(2S)-4-ethyl-3-methyl-5-oxo-2,5-dihydro-1H-pyrrol-2-yl]methyl}-4-methyl-2H-pyrrol-2-ylidene)methyl]-5-{[(2S)-3-ethyl-5-oxo-2,5-dihydro-1H-pyrrol-2-yl]methyl}-4-methyl-1H-pyrrol-3-yl)propanoic acid" CYB "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "3-[(2Z)-2-[[3-(2-carboxyethyl)-5-[(3-ethyl-5-oxo-1,2-dihydropyrrol-2-yl)methyl]-4-methyl-1H-pyrrol-2-yl]methylidene]-5-[(4-ethyl-3-methyl-5-oxo-1,2-dihydropyrrol-2-yl)methyl]-4-methyl-pyrrol-3-yl]propanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site CYB "Create component" 1999-07-08 RCSB CYB "Modify descriptor" 2011-06-04 RCSB #