data_CYR # _chem_comp.id CYR _chem_comp.name "N~5~-[{[(2R)-2-AMINO-2-CARBOXYETHYL]SULFANYL}(IMINIO)METHYL]-L-ORNITHINATE" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C9 H19 N4 O4 S" _chem_comp.mon_nstd_parent_comp_id CYS _chem_comp.pdbx_synonyms "L-CYSTEIN-S-1-(IMINOMETHYL)-L-ORNITHINE" _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2005-08-04 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 279.337 _chem_comp.one_letter_code C _chem_comp.three_letter_code CYR _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2AAF _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal CYR O1 O1 O 0 1 N N N 29.580 48.993 0.445 6.859 0.899 -1.413 O1 CYR 1 CYR C1 C1 C 0 1 N N N 28.740 49.857 0.713 6.519 0.391 -0.218 C1 CYR 2 CYR O2 O2 O 0 1 N N N 28.132 50.409 -0.196 7.182 0.649 0.759 O2 CYR 3 CYR C2 C2 C 0 1 N N S 28.469 50.228 2.172 5.311 -0.502 -0.095 C2 CYR 4 CYR N2 N2 N 0 1 N N N 28.160 51.663 2.246 5.412 -1.295 1.137 N2 CYR 5 CYR C3 C3 C 0 1 N N N 27.292 49.405 2.696 4.045 0.356 -0.047 C3 CYR 6 CYR C4 C4 C 0 1 N N N 27.705 47.942 2.879 2.814 -0.551 -0.047 C4 CYR 7 CYR C5 C5 C 0 1 N N N 26.567 47.099 3.457 1.548 0.307 0.001 C5 CYR 8 CYR N6 N6 N 0 1 N N N 27.077 45.749 3.736 0.368 -0.562 0.000 N6 CYR 9 CYR C7 C7 C 0 1 N N N 25.984 44.875 4.187 -0.892 -0.011 0.040 C7 CYR 10 CYR N7 N7 N 1 1 N N N 26.488 43.504 4.352 -1.036 1.285 0.078 N7 CYR 11 CYR SG SG S 0 1 N N N 25.174 45.453 5.727 -2.310 -1.056 0.039 SG CYR 12 CYR CB CB C 0 1 N N N 26.544 45.857 6.872 -3.620 0.192 0.099 CB CYR 13 CYR CA CA C 0 1 N N R 27.066 44.649 7.653 -4.984 -0.501 0.107 CA CYR 14 CYR C C C 0 1 N N N 28.329 45.065 8.359 -6.075 0.538 0.157 C CYR 15 CYR O O O 0 1 N N N 29.416 45.004 7.789 -6.657 0.852 -0.854 O CYR 16 CYR N N N 0 1 N N N 26.059 44.144 8.582 -5.131 -1.307 -1.112 N CYR 17 CYR OXT OXT O 0 1 N Y N 28.168 45.516 9.596 -6.399 1.116 1.324 OXT CYR 18 CYR HO1 HO1 H 0 1 N N N 29.630 48.880 -0.497 7.634 1.472 -1.492 HO1 CYR 19 CYR HC2 H2 H 0 1 N N N 29.353 50.013 2.790 5.264 -1.171 -0.954 HC2 CYR 20 CYR HN21 1HN2 H 0 0 N N N 28.559 52.047 3.078 5.453 -0.639 1.902 HN21 CYR 21 CYR HN22 2HN2 H 0 0 N N N 27.168 51.790 2.263 4.542 -1.797 1.232 HN22 CYR 22 CYR H31 1H3 H 0 1 N N N 26.468 49.456 1.969 4.051 0.961 0.860 H31 CYR 23 CYR H32 2H3 H 0 1 N N N 26.969 49.813 3.665 4.016 1.009 -0.919 H32 CYR 24 CYR H41 1H4 H 0 1 N N N 28.549 47.909 3.584 2.808 -1.156 -0.954 H41 CYR 25 CYR H42 2H4 H 0 1 N N N 27.987 47.530 1.899 2.843 -1.204 0.825 H42 CYR 26 CYR H51 1H5 H 0 1 N N N 25.737 47.045 2.737 1.553 0.912 0.908 H51 CYR 27 CYR H52 2H5 H 0 1 N N N 26.200 47.557 4.387 1.518 0.960 -0.871 H52 CYR 28 CYR HN6 HN6 H 0 1 N N N 28.031 45.466 3.634 0.476 -1.525 -0.028 HN6 CYR 29 CYR HN71 1HN7 H 0 0 N N N 27.421 43.181 4.192 -1.925 1.673 0.106 HN71 CYR 30 CYR HN72 2HN7 H 0 0 N N N 25.706 42.961 4.657 -0.255 1.860 0.079 HN72 CYR 31 CYR HB3 1HB H 0 1 N N N 26.152 46.575 7.608 -3.511 0.790 1.004 HB3 CYR 32 CYR HB2 2HB H 0 1 N N N 27.375 46.267 6.280 -3.546 0.839 -0.775 HB2 CYR 33 CYR HA HA H 0 1 N N N 27.287 43.818 6.967 -5.058 -1.147 0.981 HA CYR 34 CYR H 1HN H 0 1 N N N 25.302 44.795 8.639 -6.077 -1.658 -1.115 H CYR 35 CYR H2 2HN H 0 1 N Y N 26.468 44.029 9.487 -5.056 -0.670 -1.891 H2 CYR 36 CYR HXT HXT H 0 1 N Y N 29.010 45.774 9.951 -7.098 1.783 1.356 HXT CYR 37 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal CYR O1 C1 SING N N 1 CYR O1 HO1 SING N N 2 CYR C1 O2 DOUB N N 3 CYR C1 C2 SING N N 4 CYR C2 N2 SING N N 5 CYR C2 C3 SING N N 6 CYR C2 HC2 SING N N 7 CYR N2 HN21 SING N N 8 CYR N2 HN22 SING N N 9 CYR C3 C4 SING N N 10 CYR C3 H31 SING N N 11 CYR C3 H32 SING N N 12 CYR C4 C5 SING N N 13 CYR C4 H41 SING N N 14 CYR C4 H42 SING N N 15 CYR C5 N6 SING N N 16 CYR C5 H51 SING N N 17 CYR C5 H52 SING N N 18 CYR N6 C7 SING N N 19 CYR N6 HN6 SING N N 20 CYR C7 N7 DOUB N N 21 CYR C7 SG SING N N 22 CYR N7 HN71 SING N N 23 CYR N7 HN72 SING N N 24 CYR SG CB SING N N 25 CYR CB CA SING N N 26 CYR CB HB3 SING N N 27 CYR CB HB2 SING N N 28 CYR CA C SING N N 29 CYR CA N SING N N 30 CYR CA HA SING N N 31 CYR C O DOUB N N 32 CYR C OXT SING N N 33 CYR N H SING N N 34 CYR N H2 SING N N 35 CYR OXT HXT SING N N 36 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor CYR SMILES ACDLabs 10.04 "O=C(O)C(N)CCCNC(\SCC(N)C(=O)O)=[NH2+]" CYR SMILES_CANONICAL CACTVS 3.341 "N[C@@H](CCCNC(=[NH2+])SC[C@H](N)C(O)=O)C(O)=O" CYR SMILES CACTVS 3.341 "N[CH](CCCNC(=[NH2+])SC[CH](N)C(O)=O)C(O)=O" CYR SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C(C[C@@H](C(=O)O)N)CNC(=[NH2+])SC[C@@H](C(=O)O)N" CYR SMILES "OpenEye OEToolkits" 1.5.0 "C(CC(C(=O)O)N)CNC(=[NH2+])SCC(C(=O)O)N" CYR InChI InChI 1.03 "InChI=1S/C9H18N4O4S/c10-5(7(14)15)2-1-3-13-9(12)18-4-6(11)8(16)17/h5-6H,1-4,10-11H2,(H2,12,13)(H,14,15)(H,16,17)/p+1/t5-,6-/m0/s1" CYR InChIKey InChI 1.03 FBDBZWJNHYXEKT-WDSKDSINSA-O # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier CYR "SYSTEMATIC NAME" ACDLabs 10.04 "{[(4S)-4-amino-4-carboxybutyl]amino}{[(2R)-2-amino-2-carboxyethyl]sulfanyl}methaniminium" CYR "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[[[(4S)-4-amino-5-hydroxy-5-oxo-pentyl]amino]-[(2R)-2-amino-3-hydroxy-3-oxo-propyl]sulfanyl-methylidene]azanium" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site CYR "Create component" 2005-08-04 RCSB CYR "Modify descriptor" 2011-06-04 RCSB CYR "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id CYR _pdbx_chem_comp_synonyms.name "L-CYSTEIN-S-1-(IMINOMETHYL)-L-ORNITHINE" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##