data_CZU # _chem_comp.id CZU _chem_comp.name "[[(2~{R},3~{S},4~{R},5~{R})-3,4-bis(oxidanyl)-5-(6-oxidanylidene-1~{H}-purin-9-yl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H15 N4 O14 P3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "Inosine-5'-triphosphate" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2019-05-24 _chem_comp.pdbx_modified_date 2022-03-25 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 508.166 _chem_comp.one_letter_code ? _chem_comp.three_letter_code CZU _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6K49 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal CZU C2 C1 C 0 1 N N N 57.206 48.692 -21.690 7.273 1.573 -1.681 C2 CZU 1 CZU C4 C2 C 0 1 Y N N 54.883 48.560 -22.172 5.528 0.895 -0.337 C4 CZU 2 CZU C5 C3 C 0 1 Y N N 54.909 47.263 -21.821 6.051 1.621 0.737 C5 CZU 3 CZU C6 C4 C 0 1 N N N 56.035 46.673 -21.418 7.256 2.342 0.540 C6 CZU 4 CZU O6 O1 O 0 1 N N N 56.036 45.483 -21.104 7.752 2.991 1.445 O6 CZU 5 CZU "C1'" C5 C 0 1 N N R 52.958 50.074 -23.006 3.487 -0.564 -0.641 "C1'" CZU 6 CZU "C2'" C6 C 0 1 N N R 52.310 49.887 -24.349 3.950 -2.035 -0.549 "C2'" CZU 7 CZU "C3'" C7 C 0 1 N N S 51.407 51.102 -24.357 2.633 -2.840 -0.484 "C3'" CZU 8 CZU "C4'" C8 C 0 1 N N R 50.903 51.062 -22.895 1.530 -1.760 -0.544 "C4'" CZU 9 CZU "C5'" C9 C 0 1 N N N 49.522 50.424 -22.669 0.358 -2.145 0.361 "C5'" CZU 10 CZU C8 C10 C 0 1 Y N N 52.896 47.755 -22.400 4.236 0.665 1.431 C8 CZU 11 CZU N1 N1 N 0 1 N N N 57.221 47.413 -21.348 7.834 2.299 -0.681 N1 CZU 12 CZU N3 N2 N 0 1 N N N 56.009 49.292 -22.115 6.168 0.901 -1.515 N3 CZU 13 CZU N7 N3 N 0 1 Y N N 53.679 46.770 -21.960 5.218 1.442 1.788 N7 CZU 14 CZU N9 N4 N 0 1 Y N N 53.631 48.857 -22.535 4.386 0.302 0.126 N9 CZU 15 CZU O1A O2 O 0 1 N N N 49.829 47.452 -24.760 -2.704 -2.617 0.775 O1A CZU 16 CZU O1B O3 O 0 1 N N N 49.020 48.166 -27.113 -5.396 -1.162 0.508 O1B CZU 17 CZU O1G O4 O 0 1 N N N 45.407 46.137 -29.428 -7.458 0.343 -1.199 O1G CZU 18 CZU "O2'" O5 O 0 1 N N N 53.265 49.937 -25.432 4.704 -2.396 -1.708 "O2'" CZU 19 CZU O2A O6 O 0 1 N N N 48.444 47.696 -22.599 -1.816 -1.093 2.580 O2A CZU 20 CZU O2B O7 O 0 1 N N N 48.089 45.920 -26.325 -4.973 0.766 2.081 O2B CZU 21 CZU O2G O8 O 0 1 N N N 45.000 45.326 -27.049 -7.292 2.620 -0.123 O2G CZU 22 CZU "O3'" O9 O 0 1 N N N 52.235 52.245 -24.556 2.530 -3.724 -1.602 "O3'" CZU 23 CZU O3A O10 O 0 1 N N N 47.432 48.111 -25.016 -3.089 -0.139 0.487 O3A CZU 24 CZU O3B O11 O 0 1 N N N 46.406 47.689 -27.489 -5.160 1.133 -0.515 O3B CZU 25 CZU O3G O12 O 0 1 N N N 43.804 47.478 -27.955 -6.419 2.193 -2.565 O3G CZU 26 CZU "O4'" O13 O 0 1 N N N 51.754 50.083 -22.267 2.165 -0.557 -0.060 "O4'" CZU 27 CZU "O5'" O14 O 0 1 N N N 49.013 49.816 -23.859 -0.698 -1.195 0.203 "O5'" CZU 28 CZU PA P1 P 0 1 N N N 48.645 48.259 -23.936 -2.090 -1.290 1.006 PA CZU 29 CZU PB P2 P 0 1 N N N 47.752 47.367 -26.478 -4.670 0.121 0.637 PB CZU 30 CZU PG P3 P 0 1 N N N 45.082 46.712 -27.941 -6.601 1.546 -1.103 PG CZU 31 CZU H1 H1 H 0 1 N N N 58.114 49.274 -21.642 7.755 1.556 -2.647 H1 CZU 32 CZU H2 H2 H 0 1 N N N 53.566 50.988 -22.930 3.446 -0.242 -1.681 H2 CZU 33 CZU H3 H3 H 0 1 N N N 51.716 48.961 -24.372 4.540 -2.194 0.354 H3 CZU 34 CZU H4 H4 H 0 1 N N N 50.584 51.012 -25.081 2.572 -3.397 0.451 H4 CZU 35 CZU H5 H5 H 0 1 N N N 50.969 52.053 -22.423 1.187 -1.624 -1.570 H5 CZU 36 CZU H6 H6 H 0 1 N N N 48.820 51.204 -22.340 -0.002 -3.137 0.088 H6 CZU 37 CZU H7 H7 H 0 1 N N N 49.609 49.656 -21.887 0.688 -2.152 1.400 H7 CZU 38 CZU H8 H8 H 0 1 N N N 51.840 47.673 -22.612 3.425 0.355 2.073 H8 CZU 39 CZU H10 H10 H 0 1 N N N 53.818 49.165 -25.403 5.020 -3.310 -1.703 H10 CZU 40 CZU H11 H11 H 0 1 N N N 49.041 46.969 -22.468 -1.414 -0.243 2.806 H11 CZU 41 CZU H12 H12 H 0 1 N N N 48.975 45.767 -26.631 -4.529 1.611 2.236 H12 CZU 42 CZU H13 H13 H 0 1 N N N 45.158 44.577 -27.612 -6.785 3.435 -0.012 H13 CZU 43 CZU H14 H14 H 0 1 N N N 51.697 53.028 -24.566 3.234 -4.385 -1.647 H14 CZU 44 CZU H15 H15 H 0 1 N N N 43.441 47.473 -28.833 -7.248 2.466 -2.981 H15 CZU 45 CZU H16 H16 H 0 1 N N N 58.070 46.981 -21.043 8.655 2.790 -0.843 H16 CZU 46 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal CZU O1G PG DOUB N N 1 CZU O3G PG SING N N 2 CZU PG O3B SING N N 3 CZU PG O2G SING N N 4 CZU O3B PB SING N N 5 CZU O1B PB DOUB N N 6 CZU PB O2B SING N N 7 CZU PB O3A SING N N 8 CZU "O2'" "C2'" SING N N 9 CZU O3A PA SING N N 10 CZU O1A PA DOUB N N 11 CZU "O3'" "C3'" SING N N 12 CZU "C3'" "C2'" SING N N 13 CZU "C3'" "C4'" SING N N 14 CZU "C2'" "C1'" SING N N 15 CZU PA "O5'" SING N N 16 CZU PA O2A SING N N 17 CZU "O5'" "C5'" SING N N 18 CZU "C1'" N9 SING N N 19 CZU "C1'" "O4'" SING N N 20 CZU "C4'" "C5'" SING N N 21 CZU "C4'" "O4'" SING N N 22 CZU N9 C8 SING Y N 23 CZU N9 C4 SING Y N 24 CZU C8 N7 DOUB Y N 25 CZU C4 N3 SING N N 26 CZU C4 C5 DOUB Y N 27 CZU N3 C2 DOUB N N 28 CZU N7 C5 SING Y N 29 CZU C5 C6 SING N N 30 CZU C2 N1 SING N N 31 CZU C6 N1 SING N N 32 CZU C6 O6 DOUB N N 33 CZU C2 H1 SING N N 34 CZU "C1'" H2 SING N N 35 CZU "C2'" H3 SING N N 36 CZU "C3'" H4 SING N N 37 CZU "C4'" H5 SING N N 38 CZU "C5'" H6 SING N N 39 CZU "C5'" H7 SING N N 40 CZU C8 H8 SING N N 41 CZU "O2'" H10 SING N N 42 CZU O2A H11 SING N N 43 CZU O2B H12 SING N N 44 CZU O2G H13 SING N N 45 CZU "O3'" H14 SING N N 46 CZU O3G H15 SING N N 47 CZU N1 H16 SING N N 48 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor CZU InChI InChI 1.03 "InChI=1S/C10H15N4O14P3/c15-6-4(1-25-30(21,22)28-31(23,24)27-29(18,19)20)26-10(7(6)16)14-3-13-5-8(14)11-2-12-9(5)17/h2-4,6-7,10,15-16H,1H2,(H,21,22)(H,23,24)(H,11,12,17)(H2,18,19,20)/t4-,6-,7-,10-/m1/s1" CZU InChIKey InChI 1.03 HAEJPQIATWHALX-KQYNXXCUSA-N CZU SMILES_CANONICAL CACTVS 3.385 "O[C@H]1[C@@H](O)[C@@H](O[C@@H]1CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)n2cnc3C(=O)NC=Nc23" CZU SMILES CACTVS 3.385 "O[CH]1[CH](O)[CH](O[CH]1CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)n2cnc3C(=O)NC=Nc23" CZU SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc2c(n1[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)O)N=CNC2=O" CZU SMILES "OpenEye OEToolkits" 2.0.7 "c1nc2c(n1C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)O)N=CNC2=O" # _pdbx_chem_comp_identifier.comp_id CZU _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[[(2~{R},3~{S},4~{R},5~{R})-3,4-bis(oxidanyl)-5-(6-oxidanylidene-1~{H}-purin-9-yl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id CZU _pdbx_chem_comp_synonyms.name "Inosine-5'-triphosphate" _pdbx_chem_comp_synonyms.provenance AUTHOR _pdbx_chem_comp_synonyms.type ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site CZU "Create component" 2019-05-24 PDBJ CZU "Modify synonyms" 2022-03-23 PDBJ CZU "Initial release" 2022-03-30 RCSB ##