data_D06 # _chem_comp.id D06 _chem_comp.name "(2S)-2-amino-1-(1,3-dihydro-2H-isoindol-2-yl)-2-[(1r,4S)-4-(pyrrolidin-1-yl)cyclohexyl]ethan-1-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H29 N3 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-11-23 _chem_comp.pdbx_modified_date 2022-09-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 327.464 _chem_comp.one_letter_code ? _chem_comp.three_letter_code D06 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7SVM _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal D06 C2 C1 C 0 1 N N S -43.666 15.575 15.035 0.460 -1.910 -0.811 C2 D06 1 D06 C4 C2 C 0 1 N N N -44.043 17.059 14.855 -0.587 -0.818 -0.582 C4 D06 2 D06 C6 C3 C 0 1 N N N -43.162 18.035 15.646 -1.245 -1.021 0.784 C6 D06 3 D06 C7 C4 C 0 1 N N N -43.603 19.468 15.338 -2.292 0.071 1.013 C7 D06 4 D06 C8 C5 C 0 1 N N N -45.084 19.734 15.671 -3.357 -0.007 -0.083 C8 D06 5 D06 C11 C6 C 0 1 N N N -45.470 17.243 15.369 -1.652 -0.896 -1.678 C11 D06 6 D06 C15 C7 C 0 1 N N N -47.072 22.929 15.313 -6.734 1.409 -0.233 C15 D06 7 D06 C16 C8 C 0 1 N N N -46.900 21.404 15.411 -5.411 0.998 -0.905 C16 D06 8 D06 C17 C9 C 0 1 N N N -44.360 14.717 14.005 1.510 -1.834 0.268 C17 D06 9 D06 C21 C10 C 0 1 Y N N -46.473 12.158 15.583 3.911 0.879 -0.546 C21 D06 10 D06 C23 C11 C 0 1 Y N N -48.181 10.600 16.204 5.663 2.507 -0.692 C23 D06 11 D06 C24 C12 C 0 1 Y N N -48.448 10.368 14.862 6.198 2.037 0.493 C24 D06 12 D06 C27 C13 C 0 1 N N N -45.778 12.763 13.441 3.584 -0.719 1.148 C27 D06 13 D06 N1 N1 N 0 1 N N N -42.246 15.292 14.856 -0.189 -3.227 -0.771 N1 D06 14 D06 C10 C14 C 0 1 N N N -45.943 18.645 15.008 -2.699 0.196 -1.449 C10 D06 15 D06 N12 N2 N 0 1 N N N -45.472 21.086 15.193 -4.362 1.042 0.137 N12 D06 16 D06 C13 C15 C 0 1 N N N -44.806 22.181 15.925 -5.067 0.841 1.429 C13 D06 17 D06 C14 C16 C 0 1 N N N -45.642 23.450 15.584 -6.374 1.654 1.250 C14 D06 18 D06 O18 O1 O 0 1 N N N -44.216 14.958 12.817 1.467 -2.597 1.210 O18 D06 19 D06 N19 N3 N 0 1 N N N -45.093 13.657 14.365 2.495 -0.919 0.186 N19 D06 20 D06 C20 C17 C 0 1 N N N -45.378 13.156 15.708 2.678 0.075 -0.877 C20 D06 21 D06 C22 C18 C 0 1 Y N N -47.190 11.500 16.561 4.521 1.928 -1.211 C22 D06 22 D06 C25 C19 C 0 1 Y N N -47.725 11.029 13.872 5.582 0.997 1.164 C25 D06 23 D06 C26 C20 C 0 1 Y N N -46.736 11.937 14.241 4.441 0.413 0.641 C26 D06 24 D06 H1 H1 H 0 1 N N N -43.982 15.254 16.038 0.929 -1.766 -1.785 H1 D06 25 D06 H2 H2 H 0 1 N N N -44.003 17.316 13.786 -0.105 0.159 -0.612 H2 D06 26 D06 H3 H3 H 0 1 N N N -43.270 17.839 16.723 -1.726 -1.998 0.814 H3 D06 27 D06 H4 H4 H 0 1 N N N -42.110 17.902 15.353 -0.486 -0.966 1.564 H4 D06 28 D06 H5 H5 H 0 1 N N N -42.983 20.159 15.928 -2.760 -0.074 1.986 H5 D06 29 D06 H6 H6 H 0 1 N N N -43.446 19.659 14.266 -1.810 1.048 0.983 H6 D06 30 D06 H7 H7 H 0 1 N N N -45.218 19.677 16.761 -3.839 -0.984 -0.053 H7 D06 31 D06 H8 H8 H 0 1 N N N -46.131 16.498 14.902 -1.183 -0.751 -2.651 H8 D06 32 D06 H9 H9 H 0 1 N N N -45.489 17.116 16.461 -2.134 -1.873 -1.648 H9 D06 33 D06 H10 H10 H 0 1 N N N -47.419 23.226 14.312 -7.120 2.322 -0.685 H10 D06 34 D06 H11 H11 H 0 1 N N N -47.779 23.298 16.071 -7.466 0.605 -0.316 H11 D06 35 D06 H12 H12 H 0 1 N N N -47.513 20.910 14.643 -5.495 -0.013 -1.304 H12 D06 36 D06 H13 H13 H 0 1 N N N -47.211 21.057 16.408 -5.170 1.695 -1.708 H13 D06 37 D06 H14 H14 H 0 1 N N N -48.743 10.081 16.967 6.138 3.326 -1.211 H14 D06 38 D06 H15 H15 H 0 1 N N N -49.223 9.669 14.583 7.091 2.488 0.899 H15 D06 39 D06 H16 H16 H 0 1 N N N -45.048 12.111 12.939 3.172 -0.462 2.124 H16 D06 40 D06 H17 H17 H 0 1 N N N -46.325 13.349 12.688 4.180 -1.628 1.226 H17 D06 41 D06 H18 H18 H 0 1 N N N -41.714 15.829 15.510 0.470 -3.962 -0.983 H18 D06 42 D06 H19 H19 H 0 1 N N N -42.078 14.318 15.010 -0.631 -3.385 0.122 H19 D06 43 D06 H21 H21 H 0 1 N N N -45.890 18.767 13.916 -3.458 0.141 -2.229 H21 D06 44 D06 H22 H22 H 0 1 N N N -46.985 18.764 15.340 -2.217 1.174 -1.479 H22 D06 45 D06 H24 H24 H 0 1 N N N -44.818 21.988 17.008 -5.290 -0.215 1.586 H24 D06 46 D06 H25 H25 H 0 1 N N N -43.766 22.299 15.585 -4.476 1.235 2.256 H25 D06 47 D06 H26 H26 H 0 1 N N N -45.238 23.951 14.692 -6.196 2.714 1.434 H26 D06 48 D06 H27 H27 H 0 1 N N N -45.641 24.152 16.431 -7.157 1.274 1.906 H27 D06 49 D06 H28 H28 H 0 1 N N N -44.481 12.680 16.131 1.810 0.732 -0.922 H28 D06 50 D06 H29 H29 H 0 1 N N N -45.695 13.984 16.359 2.812 -0.428 -1.834 H29 D06 51 D06 H30 H30 H 0 1 N N N -46.979 11.686 17.604 4.103 2.295 -2.136 H30 D06 52 D06 H31 H31 H 0 1 N N N -47.929 10.839 12.829 5.995 0.637 2.095 H31 D06 53 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal D06 O18 C17 DOUB N N 1 D06 C27 C26 SING N N 2 D06 C27 N19 SING N N 3 D06 C25 C26 DOUB Y N 4 D06 C25 C24 SING Y N 5 D06 C17 N19 SING N N 6 D06 C17 C2 SING N N 7 D06 C26 C21 SING Y N 8 D06 N19 C20 SING N N 9 D06 C4 C2 SING N N 10 D06 C4 C11 SING N N 11 D06 C4 C6 SING N N 12 D06 N1 C2 SING N N 13 D06 C24 C23 DOUB Y N 14 D06 C10 C11 SING N N 15 D06 C10 C8 SING N N 16 D06 N12 C16 SING N N 17 D06 N12 C8 SING N N 18 D06 N12 C13 SING N N 19 D06 C15 C16 SING N N 20 D06 C15 C14 SING N N 21 D06 C7 C6 SING N N 22 D06 C7 C8 SING N N 23 D06 C21 C20 SING N N 24 D06 C21 C22 DOUB Y N 25 D06 C14 C13 SING N N 26 D06 C23 C22 SING Y N 27 D06 C2 H1 SING N N 28 D06 C4 H2 SING N N 29 D06 C6 H3 SING N N 30 D06 C6 H4 SING N N 31 D06 C7 H5 SING N N 32 D06 C7 H6 SING N N 33 D06 C8 H7 SING N N 34 D06 C11 H8 SING N N 35 D06 C11 H9 SING N N 36 D06 C15 H10 SING N N 37 D06 C15 H11 SING N N 38 D06 C16 H12 SING N N 39 D06 C16 H13 SING N N 40 D06 C23 H14 SING N N 41 D06 C24 H15 SING N N 42 D06 C27 H16 SING N N 43 D06 C27 H17 SING N N 44 D06 N1 H18 SING N N 45 D06 N1 H19 SING N N 46 D06 C10 H21 SING N N 47 D06 C10 H22 SING N N 48 D06 C13 H24 SING N N 49 D06 C13 H25 SING N N 50 D06 C14 H26 SING N N 51 D06 C14 H27 SING N N 52 D06 C20 H28 SING N N 53 D06 C20 H29 SING N N 54 D06 C22 H30 SING N N 55 D06 C25 H31 SING N N 56 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor D06 SMILES ACDLabs 12.01 "O=C(N1Cc2ccccc2C1)C(N)C1CCC(CC1)N1CCCC1" D06 InChI InChI 1.03 "InChI=1S/C20H29N3O/c21-19(15-7-9-18(10-8-15)22-11-3-4-12-22)20(24)23-13-16-5-1-2-6-17(16)14-23/h1-2,5-6,15,18-19H,3-4,7-14,21H2/t15-,18-,19-/m0/s1" D06 InChIKey InChI 1.03 SYXDQNGJEXFDND-SNRMKQJTSA-N D06 SMILES_CANONICAL CACTVS 3.385 "N[C@@H]([C@@H]1CC[C@H](CC1)N2CCCC2)C(=O)N3Cc4ccccc4C3" D06 SMILES CACTVS 3.385 "N[CH]([CH]1CC[CH](CC1)N2CCCC2)C(=O)N3Cc4ccccc4C3" D06 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)CN(C2)C(=O)[C@H](C3CCC(CC3)N4CCCC4)N" D06 SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)CN(C2)C(=O)C(C3CCC(CC3)N4CCCC4)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier D06 "SYSTEMATIC NAME" ACDLabs 12.01 "(2S)-2-amino-1-(1,3-dihydro-2H-isoindol-2-yl)-2-[(1r,4S)-4-(pyrrolidin-1-yl)cyclohexyl]ethan-1-one" D06 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-2-azanyl-1-(1,3-dihydroisoindol-2-yl)-2-(4-pyrrolidin-1-ylcyclohexyl)ethanone" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site D06 "Create component" 2021-11-23 RCSB D06 "Initial release" 2022-10-05 RCSB #