data_D0I
#
_chem_comp.id D0I
_chem_comp.name "[(3~{R})-3-phenyl-1-(phenylmethyl)pyrrolidin-3-yl]methanol"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C18 H21 N O"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2022-04-06
_chem_comp.pdbx_modified_date 2023-01-13
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 267.365
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code D0I
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7XEF
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
D0I N N1 N 0 1 N N N 17.067 8.350 12.240 -0.922 -0.197 0.376 N D0I 1
D0I C C1 C 0 1 N N N 20.269 9.576 12.451 1.648 -2.152 0.128 C D0I 2
D0I O O1 O 0 1 N N N 20.642 10.216 13.637 2.564 -2.595 -0.877 O D0I 3
D0I C1 C2 C 0 1 N N R 18.807 9.975 12.119 1.395 -0.653 -0.038 C1 D0I 4
D0I C10 C3 C 0 1 N N N 16.038 8.055 12.690 -1.878 0.686 1.057 C10 D0I 5
D0I C11 C4 C 0 1 Y N N 15.075 9.209 13.121 -3.264 0.434 0.520 C11 D0I 6
D0I C12 C5 C 0 1 Y N N 14.916 9.514 14.486 -4.073 -0.517 1.113 C12 D0I 7
D0I C13 C6 C 0 1 Y N N 14.043 10.533 14.892 -5.344 -0.748 0.621 C13 D0I 8
D0I C14 C7 C 0 1 Y N N 13.316 11.245 13.943 -5.806 -0.028 -0.465 C14 D0I 9
D0I C15 C8 C 0 1 Y N N 13.461 10.941 12.586 -4.996 0.923 -1.059 C15 D0I 10
D0I C16 C9 C 0 1 Y N N 14.331 9.921 12.183 -3.728 1.158 -0.563 C16 D0I 11
D0I C17 C10 C 0 1 N N N 17.962 9.417 13.032 0.407 -0.153 1.038 C17 D0I 12
D0I C2 C11 C 0 1 Y N N 18.669 11.624 12.104 2.693 0.109 0.049 C2 D0I 13
D0I C3 C12 C 0 1 Y N N 18.923 12.341 10.940 2.714 1.468 -0.205 C3 D0I 14
D0I C4 C13 C 0 1 Y N N 18.811 13.733 10.927 3.905 2.166 -0.126 C4 D0I 15
D0I C5 C14 C 0 1 Y N N 18.451 14.416 12.086 5.073 1.506 0.207 C5 D0I 16
D0I C6 C15 C 0 1 Y N N 18.209 13.711 13.250 5.051 0.148 0.461 C6 D0I 17
D0I C7 C16 C 0 1 Y N N 18.319 12.324 13.262 3.860 -0.550 0.387 C7 D0I 18
D0I C8 C17 C 0 1 N N N 18.456 9.374 10.781 0.696 -0.373 -1.384 C8 D0I 19
D0I C9 C18 C 0 1 N N N 17.076 8.637 10.986 -0.656 0.272 -1.008 C9 D0I 20
D0I H2 H2 H 0 1 N N N 20.337 8.486 12.580 0.707 -2.693 0.025 H2 D0I 21
D0I H3 H3 H 0 1 N N N 20.935 9.890 11.634 2.071 -2.343 1.114 H3 D0I 22
D0I H4 H4 H 0 1 N N N 21.536 9.982 13.856 2.771 -3.538 -0.832 H4 D0I 23
D0I H5 H5 H 0 1 N N N 15.511 7.452 11.936 -1.862 0.483 2.128 H5 D0I 24
D0I H6 H6 H 0 1 N N N 16.233 7.440 13.581 -1.603 1.725 0.879 H6 D0I 25
D0I H7 H7 H 0 1 N N N 15.471 8.958 15.227 -3.712 -1.079 1.961 H7 D0I 26
D0I H8 H8 H 0 1 N N N 13.935 10.765 15.941 -5.976 -1.491 1.084 H8 D0I 27
D0I H9 H9 H 0 1 N N N 12.642 12.030 14.254 -6.798 -0.208 -0.850 H9 D0I 28
D0I H10 H10 H 0 1 N N N 12.901 11.494 11.847 -5.357 1.485 -1.908 H10 D0I 29
D0I H11 H11 H 0 1 N N N 14.426 9.684 11.134 -3.095 1.901 -1.026 H11 D0I 30
D0I H12 H12 H 0 1 N N N 18.537 8.915 13.824 0.651 0.867 1.334 H12 D0I 31
D0I H13 H13 H 0 1 N N N 17.322 10.192 13.479 0.423 -0.815 1.905 H13 D0I 32
D0I H14 H14 H 0 1 N N N 19.209 11.818 10.040 1.802 1.984 -0.465 H14 D0I 33
D0I H15 H15 H 0 1 N N N 19.004 14.281 10.016 3.922 3.228 -0.325 H15 D0I 34
D0I H16 H16 H 0 1 N N N 18.361 15.492 12.075 6.003 2.052 0.268 H16 D0I 35
D0I H17 H17 H 0 1 N N N 17.934 14.238 14.152 5.963 -0.368 0.721 H17 D0I 36
D0I H18 H18 H 0 1 N N N 18.132 11.782 14.177 3.842 -1.611 0.589 H18 D0I 37
D0I H19 H19 H 0 1 N N N 19.230 8.657 10.469 1.290 0.317 -1.984 H19 D0I 38
D0I H20 H20 H 0 1 N N N 18.359 10.163 10.021 0.533 -1.304 -1.927 H20 D0I 39
D0I H21 H21 H 0 1 N N N 16.236 9.299 10.729 -1.441 -0.069 -1.683 H21 D0I 40
D0I H22 H22 H 0 1 N N N 17.024 7.724 10.374 -0.578 1.359 -1.033 H22 D0I 41
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
D0I C8 C9 SING N N 1
D0I C8 C1 SING N N 2
D0I C4 C3 DOUB Y N 3
D0I C4 C5 SING Y N 4
D0I C3 C2 SING Y N 5
D0I C9 N SING N N 6
D0I C5 C6 DOUB Y N 7
D0I C2 C1 SING N N 8
D0I C2 C7 DOUB Y N 9
D0I C1 C SING N N 10
D0I C1 C17 SING N N 11
D0I C16 C15 DOUB Y N 12
D0I C16 C11 SING Y N 13
D0I N C10 SING N N 14
D0I N C17 SING N N 15
D0I C O SING N N 16
D0I C15 C14 SING Y N 17
D0I C10 C11 SING N N 18
D0I C11 C12 DOUB Y N 19
D0I C6 C7 SING Y N 20
D0I C14 C13 DOUB Y N 21
D0I C12 C13 SING Y N 22
D0I C H2 SING N N 23
D0I C H3 SING N N 24
D0I O H4 SING N N 25
D0I C10 H5 SING N N 26
D0I C10 H6 SING N N 27
D0I C12 H7 SING N N 28
D0I C13 H8 SING N N 29
D0I C14 H9 SING N N 30
D0I C15 H10 SING N N 31
D0I C16 H11 SING N N 32
D0I C17 H12 SING N N 33
D0I C17 H13 SING N N 34
D0I C3 H14 SING N N 35
D0I C4 H15 SING N N 36
D0I C5 H16 SING N N 37
D0I C6 H17 SING N N 38
D0I C7 H18 SING N N 39
D0I C8 H19 SING N N 40
D0I C8 H20 SING N N 41
D0I C9 H21 SING N N 42
D0I C9 H22 SING N N 43
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
D0I InChI InChI 1.03 "InChI=1S/C18H21NO/c20-15-18(17-9-5-2-6-10-17)11-12-19(14-18)13-16-7-3-1-4-8-16/h1-10,20H,11-15H2/t18-/m1/s1"
D0I InChIKey InChI 1.03 SEKWWCPJXPJZKJ-GOSISDBHSA-N
D0I SMILES_CANONICAL CACTVS 3.385 "OC[C@]1(CCN(Cc2ccccc2)C1)c3ccccc3"
D0I SMILES CACTVS 3.385 "OC[C]1(CCN(Cc2ccccc2)C1)c3ccccc3"
D0I SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CN2CC[C@@](C2)(CO)c3ccccc3"
D0I SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CN2CCC(C2)(CO)c3ccccc3"
#
_pdbx_chem_comp_identifier.comp_id D0I
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "[(3~{R})-3-phenyl-1-(phenylmethyl)pyrrolidin-3-yl]methanol"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
D0I "Create component" 2022-04-06 PDBJ
D0I "Initial release" 2023-01-18 RCSB
#