data_D0T # _chem_comp.id D0T _chem_comp.name "(2S)-2-(3-hydroxy-3-oxopropyl)-6-[[methyl-[[2-[(phenylmethyl)carbamoyl]phenyl]methyl]amino]methyl]-2,3-dihydro-1,4-benzodioxine-5-carboxylic acid" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C29 H30 N2 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2013-11-13 _chem_comp.pdbx_modified_date 2014-04-29 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 518.558 _chem_comp.one_letter_code ? _chem_comp.three_letter_code D0T _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4CEF _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal D0T C1 C1 C 0 1 Y N N -10.277 47.669 5.215 -5.065 2.649 -2.556 C1 D0T 1 D0T C2 C2 C 0 1 Y N N -11.145 48.466 4.495 -4.546 3.897 -2.259 C2 D0T 2 D0T C3 C3 C 0 1 Y N N -9.271 46.971 4.575 -4.750 1.562 -1.766 C3 D0T 3 D0T C4 C4 C 0 1 Y N N -11.008 48.552 3.123 -3.705 4.062 -1.173 C4 D0T 4 D0T C5 C5 C 0 1 Y N N -11.508 44.790 -1.982 2.185 2.864 1.058 C5 D0T 5 D0T C6 C6 C 0 1 Y N N -12.397 44.356 -2.951 3.408 2.308 0.719 C6 D0T 6 D0T C7 C7 C 0 1 Y N N -9.139 47.064 3.201 -3.902 1.722 -0.669 C7 D0T 7 D0T C8 C8 C 0 1 Y N N -13.340 45.293 -0.526 1.198 0.673 1.100 C8 D0T 8 D0T C9 C9 C 0 1 Y N N -10.009 47.852 2.473 -3.378 2.983 -0.378 C9 D0T 9 D0T C10 C10 C 0 1 Y N N -11.970 45.259 -0.766 1.085 2.058 1.252 C10 D0T 10 D0T C11 C11 C 0 1 Y N N -13.750 44.407 -2.724 3.538 0.936 0.571 C11 D0T 11 D0T C12 C12 C 0 1 Y N N -14.226 44.857 -1.508 2.437 0.111 0.762 C12 D0T 12 D0T C13 C15 C 0 1 N N N -8.063 46.308 2.520 -3.561 0.562 0.181 C15 D0T 13 D0T C14 C16 C 0 1 N N N -13.871 45.767 0.788 0.024 -0.193 1.307 C16 D0T 14 D0T C15 C17 C 0 1 N N N -16.729 45.386 -6.339 8.452 -1.242 -1.221 C17 D0T 15 D0T C16 C18 C 0 1 Y N N -8.533 41.873 -1.022 -5.685 -5.297 -0.748 C18 D0T 16 D0T C17 C19 C 0 1 Y N N -8.437 41.294 0.225 -6.309 -4.507 0.199 C19 D0T 17 D0T C18 C20 C 0 1 Y N N -8.130 43.177 -1.220 -4.427 -4.959 -1.210 C20 D0T 18 D0T C19 C21 C 0 1 Y N N -7.932 42.036 1.267 -5.677 -3.375 0.679 C21 D0T 19 D0T C20 C22 C 0 1 Y N N -7.633 43.916 -0.168 -3.793 -3.831 -0.726 C22 D0T 20 D0T C21 C23 C 0 1 N N N -16.376 44.162 -2.177 3.863 -1.786 0.646 C23 D0T 21 D0T C22 C24 C 0 1 Y N N -7.533 43.340 1.083 -4.422 -3.034 0.213 C24 D0T 22 D0T C23 C25 C 0 1 N N S -15.913 44.463 -3.569 4.759 -0.928 -0.258 C25 D0T 23 D0T C24 C26 C 0 1 N N N -9.889 47.966 0.993 -2.462 3.166 0.804 C26 D0T 24 D0T C25 C27 C 0 1 N N N -10.940 45.735 0.226 -0.240 2.670 1.629 C27 D0T 25 D0T C26 C28 C 0 1 N N N -11.003 47.931 -1.125 -0.528 3.608 -0.585 C28 D0T 26 D0T C27 C29 C 0 1 N N N -16.416 43.940 -5.988 7.046 -0.699 -1.238 C29 D0T 27 D0T C28 C30 C 0 1 N N N -6.999 44.117 2.241 -3.730 -1.803 0.741 C30 D0T 28 D0T C29 C31 C 0 1 N N N -16.859 43.776 -4.543 6.186 -1.479 -0.241 C31 D0T 29 D0T N1 N32 N 0 1 N N N -8.024 44.966 2.801 -4.069 -0.654 -0.102 N32 D0T 30 D0T N2 N33 N 0 1 N N N -10.939 47.255 0.212 -1.105 2.731 0.444 N33 D0T 31 D0T O1 O34 O 0 1 N N N -14.784 45.044 1.288 -0.644 -0.549 0.357 O34 D0T 32 D0T O2 O35 O 0 1 N N N -17.831 45.856 -5.938 9.387 -0.707 -2.021 O35 D0T 33 D0T O3 O36 O 0 1 N N N -7.290 46.872 1.756 -2.823 0.705 1.136 O36 D0T 34 D0T O4 O37 O 0 1 N N N -13.355 46.760 1.360 -0.310 -0.590 2.551 O37 D0T 35 D0T O5 O38 O 0 1 N N N -15.839 45.961 -7.026 8.737 -2.158 -0.487 O38 D0T 36 D0T O6 O39 O 0 1 N N N -15.594 44.921 -1.256 2.541 -1.236 0.617 O39 D0T 37 D0T O7 O40 O 0 1 N N N -14.580 43.971 -3.743 4.752 0.412 0.244 O40 D0T 38 D0T H1 H1 H 0 1 N N N -10.385 47.591 6.287 -5.720 2.526 -3.405 H1 D0T 39 D0T H2 H2 H 0 1 N N N -11.924 49.017 5.000 -4.799 4.745 -2.877 H2 D0T 40 D0T H3 H3 H 0 1 N N N -8.591 46.355 5.145 -5.158 0.589 -1.997 H3 D0T 41 D0T H4 H4 H 0 1 N N N -11.686 49.171 2.554 -3.303 5.039 -0.946 H4 D0T 42 D0T H5 H5 H 0 1 N N N -10.446 44.762 -2.177 2.095 3.934 1.175 H5 D0T 43 D0T H6 H6 H 0 1 N N N -12.024 43.975 -3.890 4.265 2.948 0.568 H6 D0T 44 D0T H7 H7 H 0 1 N N N -8.926 41.302 -1.850 -6.179 -6.181 -1.124 H7 D0T 45 D0T H8 H8 H 0 1 N N N -8.753 40.273 0.381 -7.290 -4.773 0.563 H8 D0T 46 D0T H9 H9 H 0 1 N N N -8.204 43.620 -2.202 -3.940 -5.577 -1.950 H9 D0T 47 D0T H10 H10 H 0 1 N N N -7.847 41.588 2.246 -6.164 -2.758 1.419 H10 D0T 48 D0T H11 H11 H 0 1 N N N -7.324 44.939 -0.321 -2.810 -3.566 -1.088 H11 D0T 49 D0T H12 H12 H 0 1 N N N -17.437 44.435 -2.073 3.842 -2.811 0.277 H12 D0T 50 D0T H13 H13 H 0 1 N N N -16.252 43.089 -1.970 4.246 -1.769 1.666 H13 D0T 51 D0T H14 H14 H 0 1 N N N -15.946 45.549 -3.739 4.373 -0.941 -1.278 H14 D0T 52 D0T H15 H15 H 0 1 N N N -8.911 47.557 0.699 -2.443 4.217 1.090 H15 D0T 53 D0T H16 H16 H 0 1 N N N -9.934 49.033 0.730 -2.824 2.568 1.640 H16 D0T 54 D0T H17 H17 H 0 1 N N N -11.195 45.371 1.232 -0.717 2.059 2.396 H17 D0T 55 D0T H18 H18 H 0 1 N N N -9.946 45.359 -0.059 -0.079 3.677 2.014 H18 D0T 56 D0T H19 H19 H 0 1 N N N -10.995 49.022 -0.986 0.448 3.224 -0.883 H19 D0T 57 D0T H20 H20 H 0 1 N N N -10.133 47.632 -1.729 -1.188 3.634 -1.452 H20 D0T 58 D0T H21 H21 H 0 1 N N N -11.928 47.634 -1.642 -0.415 4.614 -0.183 H21 D0T 59 D0T H22 H22 H 0 1 N N N -16.974 43.255 -6.643 7.060 0.354 -0.959 H22 D0T 60 D0T H23 H23 H 0 1 N N N -15.338 43.744 -6.086 6.628 -0.805 -2.239 H23 D0T 61 D0T H24 H24 H 0 1 N N N -6.647 43.418 3.014 -4.057 -1.613 1.763 H24 D0T 62 D0T H25 H25 H 0 1 N N N -6.159 44.741 1.901 -2.651 -1.959 0.727 H25 D0T 63 D0T H26 H26 H 0 1 N N N -17.863 44.212 -4.429 6.605 -1.373 0.760 H26 D0T 64 D0T H27 H27 H 0 1 N N N -16.896 42.703 -4.304 6.173 -2.533 -0.520 H27 D0T 65 D0T H28 H28 H 0 1 N N N -8.717 44.569 3.403 -4.658 -0.768 -0.864 H28 D0T 66 D0T H30 H30 H 0 1 N N N -17.919 46.755 -6.234 10.275 -1.088 -1.975 H30 D0T 67 D0T H31 H31 H 0 1 N N N -13.755 46.877 2.214 -1.088 -1.158 2.637 H31 D0T 68 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal D0T O5 C15 DOUB N N 1 D0T C15 C27 SING N N 2 D0T C15 O2 SING N N 3 D0T C27 C29 SING N N 4 D0T C29 C23 SING N N 5 D0T O7 C23 SING N N 6 D0T O7 C11 SING N N 7 D0T C23 C21 SING N N 8 D0T C6 C11 DOUB Y N 9 D0T C6 C5 SING Y N 10 D0T C11 C12 SING Y N 11 D0T C21 O6 SING N N 12 D0T C5 C10 DOUB Y N 13 D0T C12 O6 SING N N 14 D0T C12 C8 DOUB Y N 15 D0T C18 C16 DOUB Y N 16 D0T C18 C20 SING Y N 17 D0T C26 N2 SING N N 18 D0T C16 C17 SING Y N 19 D0T C10 C8 SING Y N 20 D0T C10 C25 SING N N 21 D0T C8 C14 SING N N 22 D0T C20 C22 DOUB Y N 23 D0T N2 C25 SING N N 24 D0T N2 C24 SING N N 25 D0T C17 C19 DOUB Y N 26 D0T C14 O1 DOUB N N 27 D0T C14 O4 SING N N 28 D0T C24 C9 SING N N 29 D0T C22 C19 SING Y N 30 D0T C22 C28 SING N N 31 D0T O3 C13 DOUB N N 32 D0T C28 N1 SING N N 33 D0T C9 C4 DOUB Y N 34 D0T C9 C7 SING Y N 35 D0T C13 N1 SING N N 36 D0T C13 C7 SING N N 37 D0T C4 C2 SING Y N 38 D0T C7 C3 DOUB Y N 39 D0T C2 C1 DOUB Y N 40 D0T C3 C1 SING Y N 41 D0T C1 H1 SING N N 42 D0T C2 H2 SING N N 43 D0T C3 H3 SING N N 44 D0T C4 H4 SING N N 45 D0T C5 H5 SING N N 46 D0T C6 H6 SING N N 47 D0T C16 H7 SING N N 48 D0T C17 H8 SING N N 49 D0T C18 H9 SING N N 50 D0T C19 H10 SING N N 51 D0T C20 H11 SING N N 52 D0T C21 H12 SING N N 53 D0T C21 H13 SING N N 54 D0T C23 H14 SING N N 55 D0T C24 H15 SING N N 56 D0T C24 H16 SING N N 57 D0T C25 H17 SING N N 58 D0T C25 H18 SING N N 59 D0T C26 H19 SING N N 60 D0T C26 H20 SING N N 61 D0T C26 H21 SING N N 62 D0T C27 H22 SING N N 63 D0T C27 H23 SING N N 64 D0T C28 H24 SING N N 65 D0T C28 H25 SING N N 66 D0T C29 H26 SING N N 67 D0T C29 H27 SING N N 68 D0T N1 H28 SING N N 69 D0T O2 H30 SING N N 70 D0T O4 H31 SING N N 71 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor D0T SMILES ACDLabs 12.01 "O=C(NCc1ccccc1)c2ccccc2CN(C)Cc4ccc3OC(COc3c4C(=O)O)CCC(=O)O" D0T InChI InChI 1.03 "InChI=1S/C29H30N2O7/c1-31(16-20-9-5-6-10-23(20)28(34)30-15-19-7-3-2-4-8-19)17-21-11-13-24-27(26(21)29(35)36)37-18-22(38-24)12-14-25(32)33/h2-11,13,22H,12,14-18H2,1H3,(H,30,34)(H,32,33)(H,35,36)/t22-/m0/s1" D0T InChIKey InChI 1.03 RDFKANMJCXGBBA-QFIPXVFZSA-N D0T SMILES_CANONICAL CACTVS 3.385 "CN(Cc1ccccc1C(=O)NCc2ccccc2)Cc3ccc4O[C@@H](CCC(O)=O)COc4c3C(O)=O" D0T SMILES CACTVS 3.385 "CN(Cc1ccccc1C(=O)NCc2ccccc2)Cc3ccc4O[CH](CCC(O)=O)COc4c3C(O)=O" D0T SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CN(Cc1ccccc1C(=O)NCc2ccccc2)Cc3ccc4c(c3C(=O)O)OC[C@@H](O4)CCC(=O)O" D0T SMILES "OpenEye OEToolkits" 1.7.6 "CN(Cc1ccccc1C(=O)NCc2ccccc2)Cc3ccc4c(c3C(=O)O)OCC(O4)CCC(=O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier D0T "SYSTEMATIC NAME" ACDLabs 12.01 "(2S)-6-({[2-(benzylcarbamoyl)benzyl](methyl)amino}methyl)-2-(2-carboxyethyl)-2,3-dihydro-1,4-benzodioxine-5-carboxylic acid" D0T "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2S)-2-(3-hydroxy-3-oxopropyl)-6-[[methyl-[[2-[(phenylmethyl)carbamoyl]phenyl]methyl]amino]methyl]-2,3-dihydro-1,4-benzodioxine-5-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site D0T "Create component" 2013-11-13 EBI D0T "Initial release" 2013-11-20 RCSB D0T "Other modification" 2014-04-29 EBI #