data_D1A # _chem_comp.id D1A _chem_comp.name "N-[4-[(E)-N-carbamimidamido-C-methyl-carbonimidoyl]phenyl]-7-nitro-1H-indole-2-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H17 N7 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2009-01-06 _chem_comp.pdbx_modified_date 2014-09-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 379.373 _chem_comp.one_letter_code ? _chem_comp.three_letter_code D1A _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2W7X _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal D1A O3 O3 O -1 1 N N N 49.465 -15.911 -3.970 -6.710 2.938 0.475 O3 D1A 1 D1A N7 N7 N 1 1 N N N 48.834 -16.867 -3.509 -5.723 2.235 0.356 N7 D1A 2 D1A O2 O2 O 0 1 N N N 49.103 -17.262 -2.375 -4.612 2.719 0.479 O2 D1A 3 D1A C3 C3 C 0 1 Y N N 47.857 -17.519 -4.270 -5.873 0.791 0.066 C3 D1A 4 D1A C2 C2 C 0 1 Y N N 47.199 -18.665 -3.824 -7.128 0.241 -0.068 C2 D1A 5 D1A C4 C4 C 0 1 Y N N 47.550 -17.017 -5.523 -4.746 -0.013 -0.076 C4 D1A 6 D1A N1 N1 N 0 1 Y N N 48.000 -15.946 -6.209 -3.396 0.238 -0.005 N1 D1A 7 D1A C8 C8 C 0 1 Y N N 47.364 -15.838 -7.415 -2.712 -0.941 -0.229 C8 D1A 8 D1A C7 C7 C 0 1 Y N N 46.491 -16.904 -7.537 -3.606 -1.942 -0.441 C7 D1A 9 D1A C5 C5 C 0 1 Y N N 46.618 -17.627 -6.319 -4.905 -1.385 -0.351 C5 D1A 10 D1A C6 C6 C 0 1 Y N N 45.955 -18.778 -5.899 -6.193 -1.922 -0.477 C6 D1A 11 D1A C1 C1 C 0 1 Y N N 46.248 -19.292 -4.633 -7.282 -1.112 -0.340 C1 D1A 12 D1A C9 C9 C 0 1 N N N 47.656 -14.812 -8.429 -1.249 -1.089 -0.236 C9 D1A 13 D1A O1 O1 O 0 1 N N N 48.566 -14.018 -8.203 -0.749 -2.179 -0.444 O1 D1A 14 D1A N2 N2 N 0 1 N N N 46.924 -14.825 -9.542 -0.462 -0.019 -0.011 N2 D1A 15 D1A C10 C10 C 0 1 Y N N 47.101 -13.992 -10.653 0.922 -0.178 0.091 C10 D1A 16 D1A C15 C15 C 0 1 Y N N 46.273 -14.218 -11.752 1.771 0.825 -0.361 C15 D1A 17 D1A C14 C14 C 0 1 Y N N 46.385 -13.485 -12.901 3.136 0.671 -0.261 C14 D1A 18 D1A C13 C13 C 0 1 Y N N 47.339 -12.489 -12.994 3.668 -0.495 0.295 C13 D1A 19 D1A C12 C12 C 0 1 Y N N 48.194 -12.273 -11.911 2.811 -1.502 0.749 C12 D1A 20 D1A C11 C11 C 0 1 Y N N 48.076 -13.018 -10.738 1.446 -1.338 0.651 C11 D1A 21 D1A C16 C16 C 0 1 N N N 47.459 -11.704 -14.260 5.128 -0.664 0.403 C16 D1A 22 D1A C17 C17 C 0 1 N N N 48.096 -10.346 -14.278 5.699 -1.923 1.004 C17 D1A 23 D1A N3 N3 N 0 1 N N N 47.060 -12.228 -15.347 5.922 0.271 -0.019 N3 D1A 24 D1A N4 N4 N 0 1 N N N 47.124 -11.616 -16.453 7.310 0.111 0.084 N4 D1A 25 D1A C18 C18 C 0 1 N N N 46.699 -12.299 -17.513 8.153 1.103 -0.364 C18 D1A 26 D1A N6 N6 N 0 1 N N N 46.711 -11.797 -18.725 9.516 0.945 -0.263 N6 D1A 27 D1A N5 N5 N 0 1 N N N 46.348 -13.496 -17.367 7.659 2.192 -0.883 N5 D1A 28 D1A H2 H2 H 0 1 N N N 47.426 -19.070 -2.849 -8.001 0.868 0.038 H2 D1A 29 D1A H1 H1 H 0 1 N N N 45.738 -20.176 -4.279 -8.274 -1.528 -0.442 H1 D1A 30 D1A HA HA H 0 1 N N N 48.704 -15.316 -5.880 -2.991 1.102 0.172 HA D1A 31 D1A H7 H7 H 0 1 N N N 45.851 -17.137 -8.376 -3.369 -2.976 -0.643 H7 D1A 32 D1A H6 H6 H 0 1 N N N 45.231 -19.262 -6.537 -6.323 -2.974 -0.688 H6 D1A 33 D1A HB HB H 0 1 N N N 46.180 -15.491 -9.588 -0.857 0.863 0.079 HB D1A 34 D1A H15 H15 H 0 1 N N N 45.523 -14.993 -11.694 1.360 1.727 -0.791 H15 D1A 35 D1A H11 H11 H 0 1 N N N 48.740 -12.835 -9.906 0.783 -2.114 1.005 H11 D1A 36 D1A H14 H14 H 0 1 N N N 45.729 -13.684 -13.735 3.796 1.451 -0.613 H14 D1A 37 D1A H12 H12 H 0 1 N N N 48.960 -11.515 -11.983 3.217 -2.405 1.179 H12 D1A 38 D1A H171 H171 H 0 0 N N N 48.081 -9.947 -15.303 5.855 -2.662 0.218 H171 D1A 39 D1A H172 H172 H 0 0 N N N 47.537 -9.670 -13.614 6.651 -1.697 1.484 H172 D1A 40 D1A H173 H173 H 0 0 N N N 49.137 -10.425 -13.930 5.003 -2.321 1.743 H173 D1A 41 D1A H61N H61N H 0 0 N N N 46.445 -12.365 -19.504 9.883 0.135 0.124 H61N D1A 42 D1A H62N H62N H 0 0 N N N 46.986 -10.847 -18.870 10.109 1.645 -0.578 H62N D1A 43 D1A H5N H5N H 0 1 N N N 46.113 -13.926 -18.239 8.253 2.891 -1.199 H5N D1A 44 D1A H4N H4N H 0 1 N N N 47.471 -10.681 -16.525 7.678 -0.700 0.470 H4N D1A 45 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal D1A O3 N7 SING N N 1 D1A N7 O2 DOUB N N 2 D1A N7 C3 SING N N 3 D1A C3 C2 SING Y N 4 D1A C3 C4 DOUB Y N 5 D1A C2 C1 DOUB Y N 6 D1A C4 N1 SING Y N 7 D1A C4 C5 SING Y N 8 D1A N1 C8 SING Y N 9 D1A C8 C7 DOUB Y N 10 D1A C8 C9 SING N N 11 D1A C7 C5 SING Y N 12 D1A C5 C6 DOUB Y N 13 D1A C6 C1 SING Y N 14 D1A C9 O1 DOUB N N 15 D1A C9 N2 SING N N 16 D1A N2 C10 SING N N 17 D1A C10 C15 SING Y N 18 D1A C10 C11 DOUB Y N 19 D1A C15 C14 DOUB Y N 20 D1A C14 C13 SING Y N 21 D1A C13 C12 DOUB Y N 22 D1A C13 C16 SING N N 23 D1A C12 C11 SING Y N 24 D1A C16 C17 SING N N 25 D1A C16 N3 DOUB N E 26 D1A N3 N4 SING N N 27 D1A N4 C18 SING N N 28 D1A C18 N6 SING N N 29 D1A C18 N5 DOUB N N 30 D1A C2 H2 SING N N 31 D1A C1 H1 SING N N 32 D1A N1 HA SING N N 33 D1A C7 H7 SING N N 34 D1A C6 H6 SING N N 35 D1A N2 HB SING N N 36 D1A C15 H15 SING N N 37 D1A C11 H11 SING N N 38 D1A C14 H14 SING N N 39 D1A C12 H12 SING N N 40 D1A C17 H171 SING N N 41 D1A C17 H172 SING N N 42 D1A C17 H173 SING N N 43 D1A N6 H61N SING N N 44 D1A N6 H62N SING N N 45 D1A N5 H5N SING N N 46 D1A N4 H4N SING N N 47 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor D1A SMILES ACDLabs 12.01 "[O-][N+](=O)c1cccc2c1nc(c2)C(=O)Nc3ccc(\C(=N\NC(=[N@H])N)C)cc3" D1A InChI InChI 1.03 "InChI=1S/C18H17N7O3/c1-10(23-24-18(19)20)11-5-7-13(8-6-11)21-17(26)14-9-12-3-2-4-15(25(27)28)16(12)22-14/h2-9,22H,1H3,(H,21,26)(H4,19,20,24)/b23-10+" D1A InChIKey InChI 1.03 ZKHRFTLMLVMQMS-AUEPDCJTSA-N D1A SMILES_CANONICAL CACTVS 3.385 "CC(=N\NC(N)=N)/c1ccc(NC(=O)c2[nH]c3c(cccc3[N+]([O-])=O)c2)cc1" D1A SMILES CACTVS 3.385 "CC(=NNC(N)=N)c1ccc(NC(=O)c2[nH]c3c(cccc3[N+]([O-])=O)c2)cc1" D1A SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "[H]/N=C(\N)/N/N=C(\C)/c1ccc(cc1)NC(=O)c2cc3cccc(c3[nH]2)[N+](=O)[O-]" D1A SMILES "OpenEye OEToolkits" 1.9.2 "CC(=NNC(=N)N)c1ccc(cc1)NC(=O)c2cc3cccc(c3[nH]2)[N+](=O)[O-]" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier D1A "SYSTEMATIC NAME" ACDLabs 12.01 "N-{4-[(1E)-1-(2-carbamimidoylhydrazinylidene)ethyl]phenyl}-7-nitro-1H-indole-2-carboxamide" D1A "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "N-[4-[(E)-N-carbamimidamido-C-methyl-carbonimidoyl]phenyl]-7-nitro-1H-indole-2-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site D1A "Create component" 2009-01-06 EBI D1A "Modify aromatic_flag" 2011-06-04 RCSB D1A "Modify descriptor" 2011-06-04 RCSB D1A "Other modification" 2012-08-08 EBI D1A "Modify descriptor" 2014-09-05 RCSB #