data_D1I # _chem_comp.id D1I _chem_comp.name "3-(beta-D-glucopyranosyl)-6-pentylfuro[2,3-d]pyrimidin-2(3H)-one" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C17 H24 N2 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2012-04-10 _chem_comp.pdbx_modified_date 2012-07-20 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 368.382 _chem_comp.one_letter_code ? _chem_comp.three_letter_code D1I _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4EKE _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal D1I N1 N1 N 0 1 N N N 34.020 23.670 28.735 -0.794 -0.260 -0.070 N1 D1I 1 D1I C2 C2 C 0 1 N N N 33.291 24.198 29.745 -0.547 -0.276 1.251 C2 D1I 2 D1I O2 O2 O 0 1 N N N 32.063 24.148 29.799 -1.478 -0.142 2.029 O2 D1I 3 D1I N3 N3 N 0 1 N N N 33.899 24.950 30.717 0.682 -0.433 1.737 N3 D1I 4 D1I C4 C4 C 0 1 N N N 35.331 24.825 30.792 1.717 -0.581 0.924 C4 D1I 5 D1I C5 C5 C 0 1 N N N 36.044 24.457 29.661 1.496 -0.570 -0.479 C5 D1I 6 D1I O5 O5 O 0 1 N N N 36.038 25.722 31.579 3.035 -0.755 1.111 O5 D1I 7 D1I C6 C6 C 0 1 N N N 35.438 23.752 28.704 0.217 -0.406 -0.959 C6 D1I 8 D1I C7 C7 C 0 1 N N N 37.309 24.700 30.011 2.822 -0.754 -1.084 C7 D1I 9 D1I C8 C8 C 0 1 N N N 37.312 25.449 31.154 3.684 -0.856 -0.065 C8 D1I 10 D1I C9 C9 C 0 1 N N N 38.627 25.982 31.818 5.170 -1.056 -0.213 C9 D1I 11 D1I "C1'" "C1'" C 0 1 N N R 33.275 22.882 27.756 -2.167 -0.090 -0.552 "C1'" D1I 12 D1I C10 C10 C 0 1 N N N 38.529 27.506 32.240 5.875 0.301 -0.155 C10 D1I 13 D1I C11 C11 C 0 1 N N N 38.675 27.741 33.775 7.384 0.098 -0.305 C11 D1I 14 D1I C12 C12 C 0 1 N N N 39.698 26.796 34.458 8.089 1.455 -0.248 C12 D1I 15 D1I C13 C13 C 0 1 N N N 40.080 27.338 35.849 9.598 1.252 -0.398 C13 D1I 16 D1I "C2'" "C2'" C 0 1 N N R 33.690 23.039 26.312 -3.010 -1.295 -0.127 "C2'" D1I 17 D1I "O2'" "O2'" O 0 1 N N N 33.922 24.418 25.997 -2.487 -2.480 -0.732 "O2'" D1I 18 D1I "C3'" "C3'" C 0 1 N N S 32.559 22.420 25.465 -4.457 -1.082 -0.582 "C3'" D1I 19 D1I "O3'" "O3'" O 0 1 N N N 32.911 22.373 24.109 -5.266 -2.168 -0.126 "O3'" D1I 20 D1I "C4'" "C4'" C 0 1 N N S 32.322 20.994 25.917 -4.979 0.230 0.010 "C4'" D1I 21 D1I "O4'" "O4'" O 0 1 N N N 31.198 20.460 25.205 -6.303 0.476 -0.466 "O4'" D1I 22 D1I "C5'" "C5'" C 0 1 N N R 32.125 20.866 27.444 -4.060 1.377 -0.420 "C5'" D1I 23 D1I "O5'" "O5'" O 0 1 N N N 33.219 21.464 28.143 -2.724 1.101 0.008 "O5'" D1I 24 D1I "C6'" "C6'" C 0 1 N N N 32.158 19.405 27.875 -4.540 2.682 0.217 "C6'" D1I 25 D1I "O6'" "O6'" O 0 1 N N N 33.200 18.687 27.247 -3.754 3.770 -0.275 "O6'" D1I 26 D1I H6 H6 H 0 1 N N N 36.008 23.259 27.930 0.024 -0.394 -2.021 H6 D1I 27 D1I H7 H7 H 0 1 N N N 38.185 24.361 29.479 3.055 -0.799 -2.137 H7 D1I 28 D1I H19 H19 H 0 1 N N N 38.835 25.382 32.716 5.534 -1.689 0.596 H19 D1I 29 D1I H29 H29 H 0 1 N N N 39.453 25.869 31.101 5.379 -1.534 -1.170 H29 D1I 30 D1I "H1'" "H1'" H 0 1 N N N 32.238 23.246 27.802 -2.163 -0.014 -1.639 "H1'" D1I 31 D1I H110 H110 H 0 0 N N N 39.328 28.061 31.726 5.511 0.934 -0.965 H110 D1I 32 D1I H210 H210 H 0 0 N N N 37.550 27.893 31.921 5.666 0.779 0.802 H210 D1I 33 D1I H111 H111 H 0 0 N N N 39.000 28.779 33.938 7.748 -0.535 0.504 H111 D1I 34 D1I H211 H211 H 0 0 N N N 37.692 27.586 34.245 7.593 -0.380 -1.263 H211 D1I 35 D1I H112 H112 H 0 0 N N N 39.252 25.797 34.568 7.725 2.088 -1.057 H112 D1I 36 D1I H212 H212 H 0 0 N N N 40.602 26.728 33.834 7.880 1.933 0.709 H212 D1I 37 D1I H113 H113 H 0 0 N N N 40.805 26.659 36.321 9.962 0.619 0.411 H113 D1I 38 D1I H213 H213 H 0 0 N N N 40.529 28.337 35.743 9.807 0.774 -1.355 H213 D1I 39 D1I H313 H313 H 0 0 N N N 39.179 27.406 36.476 10.101 2.218 -0.357 H313 D1I 40 D1I "H2'" "H2'" H 0 1 N N N 34.608 22.458 26.142 -2.980 -1.396 0.958 "H2'" D1I 41 D1I "HO2'" "HO2'" H 0 0 N N N 34.624 24.754 26.542 -2.974 -3.285 -0.505 "HO2'" D1I 42 D1I "H3'" "H3'" H 0 1 N N N 31.640 23.006 25.613 -4.493 -1.031 -1.670 "H3'" D1I 43 D1I "HO3'" "HO3'" H 0 0 N N N 33.068 23.254 23.791 -6.198 -2.095 -0.373 "HO3'" D1I 44 D1I "H4'" "H4'" H 0 1 N N N 33.215 20.409 25.653 -4.989 0.160 1.098 "H4'" D1I 45 D1I "HO4'" "HO4'" H 0 0 N N N 31.043 19.565 25.483 -6.939 -0.214 -0.233 "HO4'" D1I 46 D1I "H5'" "H5'" H 0 1 N N N 31.167 21.322 27.734 -4.082 1.472 -1.505 "H5'" D1I 47 D1I "H16'" "H16'" H 0 0 N N N 31.198 18.937 27.614 -5.587 2.846 -0.036 "H16'" D1I 48 D1I "H26'" "H26'" H 0 0 N N N 32.303 19.360 28.964 -4.434 2.618 1.300 "H26'" D1I 49 D1I "HO6'" "HO6'" H 0 0 N N N 33.186 17.784 27.542 -4.004 4.631 0.087 "HO6'" D1I 50 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal D1I "O3'" "C3'" SING N N 1 D1I "O4'" "C4'" SING N N 2 D1I "C3'" "C4'" SING N N 3 D1I "C3'" "C2'" SING N N 4 D1I "C4'" "C5'" SING N N 5 D1I "O2'" "C2'" SING N N 6 D1I "C2'" "C1'" SING N N 7 D1I "O6'" "C6'" SING N N 8 D1I "C5'" "C6'" SING N N 9 D1I "C5'" "O5'" SING N N 10 D1I "C1'" "O5'" SING N N 11 D1I "C1'" N1 SING N N 12 D1I C6 N1 SING N N 13 D1I C6 C5 DOUB N N 14 D1I N1 C2 SING N N 15 D1I C5 C7 SING N N 16 D1I C5 C4 SING N N 17 D1I C2 O2 DOUB N N 18 D1I C2 N3 SING N N 19 D1I C7 C8 DOUB N N 20 D1I N3 C4 DOUB N N 21 D1I C4 O5 SING N N 22 D1I C8 O5 SING N N 23 D1I C8 C9 SING N N 24 D1I C9 C10 SING N N 25 D1I C10 C11 SING N N 26 D1I C11 C12 SING N N 27 D1I C12 C13 SING N N 28 D1I C6 H6 SING N N 29 D1I C7 H7 SING N N 30 D1I C9 H19 SING N N 31 D1I C9 H29 SING N N 32 D1I "C1'" "H1'" SING N N 33 D1I C10 H110 SING N N 34 D1I C10 H210 SING N N 35 D1I C11 H111 SING N N 36 D1I C11 H211 SING N N 37 D1I C12 H112 SING N N 38 D1I C12 H212 SING N N 39 D1I C13 H113 SING N N 40 D1I C13 H213 SING N N 41 D1I C13 H313 SING N N 42 D1I "C2'" "H2'" SING N N 43 D1I "O2'" "HO2'" SING N N 44 D1I "C3'" "H3'" SING N N 45 D1I "O3'" "HO3'" SING N N 46 D1I "C4'" "H4'" SING N N 47 D1I "O4'" "HO4'" SING N N 48 D1I "C5'" "H5'" SING N N 49 D1I "C6'" "H16'" SING N N 50 D1I "C6'" "H26'" SING N N 51 D1I "O6'" "HO6'" SING N N 52 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor D1I SMILES ACDLabs 12.01 "O=C1N=C3OC(=CC3=CN1C2OC(C(O)C(O)C2O)CO)CCCCC" D1I InChI InChI 1.03 "InChI=1S/C17H24N2O7/c1-2-3-4-5-10-6-9-7-19(17(24)18-15(9)25-10)16-14(23)13(22)12(21)11(8-20)26-16/h6-7,11-14,16,20-23H,2-5,8H2,1H3/t11-,12-,13+,14-,16-/m1/s1" D1I InChIKey InChI 1.03 OPBPIQMYHFDOAO-XYFZXANASA-N D1I SMILES_CANONICAL CACTVS 3.370 "CCCCCC1=CC2=CN([C@@H]3O[C@H](CO)[C@@H](O)[C@H](O)[C@H]3O)C(=O)N=C2O1" D1I SMILES CACTVS 3.370 "CCCCCC1=CC2=CN([CH]3O[CH](CO)[CH](O)[CH](O)[CH]3O)C(=O)N=C2O1" D1I SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CCCCCC1=CC2=CN(C(=O)N=C2O1)[C@H]3[C@@H]([C@H]([C@@H]([C@H](O3)CO)O)O)O" D1I SMILES "OpenEye OEToolkits" 1.7.6 "CCCCCC1=CC2=CN(C(=O)N=C2O1)C3C(C(C(C(O3)CO)O)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier D1I "SYSTEMATIC NAME" ACDLabs 12.01 "3-(beta-D-glucopyranosyl)-6-pentylfuro[2,3-d]pyrimidin-2(3H)-one" D1I "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "3-[(2R,3R,4S,5S,6R)-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]-6-pentyl-furo[2,3-d]pyrimidin-2-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site D1I "Create component" 2012-04-10 RCSB #