data_D1O # _chem_comp.id D1O _chem_comp.name ;tri-(mi2-acetato-(O, O')-diaqua-dirhodium(II, II) ; _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C6 H14 O8 Rh2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-12-14 _chem_comp.pdbx_modified_date 2022-08-22 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 419.982 _chem_comp.one_letter_code ? _chem_comp.three_letter_code D1O _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7QHR _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal D1O C1 C1 C 0 1 N N N 13.836 7.078 22.211 0.196 0.399 2.112 C1 D1O 1 D1O C2 C2 C 0 1 N N N 15.063 7.366 23.079 1.146 0.943 3.191 C2 D1O 2 D1O C3 C3 C 0 1 N N N 12.910 8.317 18.798 -2.312 0.241 0.393 C3 D1O 3 D1O C4 C4 C 0 1 N N N 13.501 9.211 17.698 -3.747 -0.152 0.004 C4 D1O 4 D1O C5 C5 C 0 1 N N N 10.666 5.152 22.144 2.198 -0.387 -0.854 C5 D1O 5 D1O C6 C6 C 0 1 N N N 9.950 4.092 23.026 3.602 -0.808 -0.388 C6 D1O 6 D1O RH1 RH1 RH 0 0 N N N 12.312 5.744 20.050 0.056 1.101 -0.418 RH1 D1O 7 D1O RH2 RH2 RH 0 0 N N N 11.175 7.625 21.007 -0.144 -1.211 0.038 RH2 D1O 8 D1O O1 O1 O 0 1 N N N 13.835 6.101 21.461 -0.248 1.501 1.321 O1 D1O 9 D1O O2 O2 O 0 1 N N N 12.846 7.814 22.257 0.836 -0.704 1.474 O2 D1O 10 D1O O3 O3 O 0 1 N N N 10.952 5.119 18.580 0.376 1.921 -1.964 O3 D1O 11 D1O O4 O4 O 0 1 N N N 9.567 7.389 19.686 -1.107 -1.438 -1.479 O4 D1O 12 D1O O0 O5 O 0 1 N N N 11.419 4.465 21.450 1.796 0.736 -0.076 O0 D1O 13 D1O O9 O6 O 0 1 N N N 10.307 6.309 22.375 1.375 -1.549 -0.887 O9 D1O 14 D1O O7 O7 O 0 1 N N N 13.172 7.120 18.718 -1.716 0.888 -0.728 O7 D1O 15 D1O O8 O8 O 0 1 N N N 12.111 8.839 19.575 -1.676 -0.905 0.955 O8 D1O 16 D1O H1 H1 H 0 1 N N N 14.259 7.697 21.406 -0.694 -0.001 2.629 H1 D1O 17 D1O H2 H2 H 0 1 N N N 14.884 8.271 23.679 2.077 1.266 2.726 H2 D1O 18 D1O H3 H3 H 0 1 N N N 15.247 6.513 23.748 0.678 1.789 3.695 H3 D1O 19 D1O H4 H4 H 0 1 N N N 15.940 7.521 22.434 1.357 0.159 3.919 H4 D1O 20 D1O H5 H5 H 0 1 N N N 13.762 8.509 19.467 -2.384 0.996 1.195 H5 D1O 21 D1O H6 H6 H 0 1 N N N 13.201 10.255 17.873 -4.287 -0.482 0.891 H6 D1O 22 D1O H7 H7 H 0 1 N N N 14.598 9.137 17.716 -4.255 0.711 -0.429 H7 D1O 23 D1O H8 H8 H 0 1 N N N 13.127 8.881 16.717 -3.718 -0.961 -0.726 H8 D1O 24 D1O H9 H9 H 0 1 N N N 9.876 5.056 21.385 2.293 -0.032 -1.897 H9 D1O 25 D1O H10 H10 H 0 1 N N N 9.240 4.594 23.700 4.012 -1.540 -1.085 H10 D1O 26 D1O H11 H11 H 0 1 N N N 9.407 3.385 22.381 4.252 0.066 -0.356 H11 D1O 27 D1O H12 H12 H 0 1 N N N 10.696 3.546 23.621 3.538 -1.250 0.606 H12 D1O 28 D1O H13 H13 H 0 1 N N N 10.389 4.442 18.936 0.413 2.885 -1.898 H13 D1O 29 D1O H14 H14 H 0 1 N N N 8.908 6.833 20.085 -1.388 -2.350 -1.634 H14 D1O 30 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal D1O C4 C3 SING N N 1 D1O O3 RH1 SING N N 2 D1O O7 C3 SING N N 3 D1O O7 RH1 SING N N 4 D1O C3 O8 SING N N 5 D1O O8 RH2 SING N N 6 D1O O4 RH2 SING N N 7 D1O RH1 RH2 SING N N 8 D1O RH1 O0 SING N N 9 D1O RH1 O1 SING N N 10 D1O RH2 O2 SING N N 11 D1O RH2 O9 SING N N 12 D1O O0 C5 SING N N 13 D1O O1 C1 SING N N 14 D1O C5 O9 SING N N 15 D1O C5 C6 SING N N 16 D1O C1 O2 SING N N 17 D1O C1 C2 SING N N 18 D1O C1 H1 SING N N 19 D1O C2 H2 SING N N 20 D1O C2 H3 SING N N 21 D1O C2 H4 SING N N 22 D1O C3 H5 SING N N 23 D1O C4 H6 SING N N 24 D1O C4 H7 SING N N 25 D1O C4 H8 SING N N 26 D1O C5 H9 SING N N 27 D1O C6 H10 SING N N 28 D1O C6 H11 SING N N 29 D1O C6 H12 SING N N 30 D1O O3 H13 SING N N 31 D1O O4 H14 SING N N 32 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor D1O InChI InChI 1.06 "InChI=1S/3C2H4O2.2H2O.2Rh/c3*1-2(3)4;;;;/h3*2H,1H3;2*1H2;;/q3*-2;;;2*+4/p-2" D1O InChIKey InChI 1.06 WOIABTFBXKXYRQ-UHFFFAOYSA-L D1O SMILES_CANONICAL CACTVS 3.385 "C[C@H]1O[Rh]23(O)O[C@@H](C)O[Rh]2(O)(O1)O[C@H](C)O3" D1O SMILES CACTVS 3.385 "C[CH]1O[Rh]23(O)O[CH](C)O[Rh]2(O)(O1)O[CH](C)O3" D1O SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC1O[Rh]23(OC(O[Rh]2(O1)(OC(O3)C)O)C)O" D1O SMILES "OpenEye OEToolkits" 2.0.7 "CC1O[Rh]23(OC(O[Rh]2(O1)(OC(O3)C)O)C)O" # _pdbx_chem_comp_identifier.comp_id D1O _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "3,7,10-trimethyl-1,5-bis(oxidanyl)-2,4,6,8,9,11-hexaoxa-1$l^{5},5$l^{5}-dirhodatricyclo[3.3.3.0^{1,5}]undecane" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site D1O "Create component" 2021-12-14 PDBE D1O "Modify name" 2022-03-30 PDBE D1O "Initial release" 2022-06-08 RCSB D1O "Modify descriptor" 2022-08-22 RCSB #