data_D2R # _chem_comp.id D2R _chem_comp.name "6-{2-[(2,4-diamino-5-methylpyrido[2,3-d]pyrimidin-6-yl)methyl]-4-methoxyphenyl}hex-5-ynoic acid" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H23 N5 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "2,4-Diamino--5-methyl-6-[2'-(4-carboxy-1-pentynyl)-5'-methoxybenzyl]pyrido[2,3-d]pyrimidine" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2011-08-24 _chem_comp.pdbx_modified_date 2021-03-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 405.450 _chem_comp.one_letter_code ? _chem_comp.three_letter_code D2R _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3TD8 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal D2R N1 N1 N 0 1 Y N N 10.356 -1.278 13.110 -1.301 4.762 -0.229 N1 D2R 1 D2R C2 C2 C 0 1 Y N N 10.614 -2.106 12.073 -0.196 4.794 -0.968 C2 D2R 2 D2R N3 N3 N 0 1 Y N N 11.641 -1.893 11.234 0.602 3.752 -1.109 N3 D2R 3 D2R C4 C4 C 0 1 Y N N 12.385 -0.778 11.413 0.322 2.593 -0.497 C4 D2R 4 D2R C5 C5 C 0 1 Y N N 12.147 0.130 12.506 -0.846 2.514 0.301 C5 D2R 5 D2R C6 C6 C 0 1 Y N N 11.055 -0.191 13.387 -1.666 3.663 0.416 C6 D2R 6 D2R CAA CAA C 0 1 N N N 18.079 2.311 15.347 -5.934 -3.309 -0.569 CAA D2R 7 D2R CAB CAB C 0 1 N N N 12.841 2.389 13.732 -2.388 1.185 1.804 CAB D2R 8 D2R NAC NAC N 0 1 N N N 9.868 -3.232 11.841 0.131 5.970 -1.617 NAC D2R 9 D2R NAD NAD N 0 1 N N N 10.707 0.571 14.438 -2.813 3.639 1.179 NAD D2R 10 D2R OAE OAE O 0 1 N N N 12.034 6.644 5.696 5.298 -0.449 1.395 OAE D2R 11 D2R OAF OAF O 0 1 N N N 11.408 4.981 7.023 7.264 -0.948 0.519 OAF D2R 12 D2R CAG CAG C 0 1 N N N 16.242 3.393 8.342 1.531 -2.752 -0.894 CAG D2R 13 D2R CAH CAH C 0 1 N N N 16.718 3.071 9.407 0.376 -2.713 -0.688 CAH D2R 14 D2R CAI CAI C 0 1 Y N N 19.190 2.090 12.031 -3.266 -3.363 -0.983 CAI D2R 15 D2R CAJ CAJ C 0 1 Y N N 18.660 2.474 10.800 -1.910 -3.411 -1.227 CAJ D2R 16 D2R CAK CAK C 0 1 Y N N 14.140 0.529 10.682 0.827 0.393 -0.019 CAK D2R 17 D2R CAL CAL C 0 1 Y N N 16.938 2.171 13.003 -2.890 -1.833 0.838 CAL D2R 18 D2R CAM CAM C 0 1 N N N 15.696 3.762 7.027 2.980 -2.801 -1.151 CAM D2R 19 D2R CAN CAN C 0 1 N N N 14.279 4.233 7.272 3.706 -1.899 -0.152 CAN D2R 20 D2R CAO CAO C 0 1 N N N 13.661 4.970 6.072 5.212 -1.950 -0.419 CAO D2R 21 D2R CAP CAP C 0 1 N N N 14.929 2.742 11.722 -0.591 -1.065 1.452 CAP D2R 22 D2R NAQ NAQ N 0 1 Y N N 13.393 -0.572 10.530 1.111 1.525 -0.623 NAQ D2R 23 D2R OAT OAT O 0 1 N N N 18.816 1.608 14.343 -5.097 -2.524 0.282 OAT D2R 24 D2R CAU CAU C 0 1 N N N 12.263 5.578 6.301 5.927 -1.061 0.565 CAU D2R 25 D2R CAX CAX C 0 1 Y N N 12.955 1.300 12.627 -1.155 1.311 0.947 CAX D2R 26 D2R CAY CAY C 0 1 Y N N 18.317 1.961 13.136 -3.760 -2.573 0.047 CAY D2R 27 D2R CAZ CAZ C 0 1 Y N N 17.275 2.684 10.674 -1.033 -2.665 -0.438 CAZ D2R 28 D2R CBA CBA C 0 1 Y N N 13.988 1.487 11.693 -0.303 0.252 0.777 CBA D2R 29 D2R CBB CBB C 0 1 Y N N 16.408 2.512 11.782 -1.533 -1.872 0.596 CBB D2R 30 D2R HAA HAA H 0 1 N N N 18.465 2.042 16.341 -5.806 -2.987 -1.602 HAA D2R 31 D2R HAAA HAAA H 0 0 N N N 18.190 3.394 15.192 -5.659 -4.360 -0.479 HAAA D2R 32 D2R HAAB HAAB H 0 0 N N N 17.016 2.037 15.280 -6.976 -3.180 -0.274 HAAB D2R 33 D2R HAB HAB H 0 1 N N N 13.470 2.109 14.590 -3.251 0.977 1.171 HAB D2R 34 D2R HABA HABA H 0 0 N N N 13.179 3.356 13.330 -2.255 0.370 2.515 HABA D2R 35 D2R HABB HABB H 0 0 N N N 11.794 2.473 14.057 -2.551 2.117 2.346 HABB D2R 36 D2R HNAC HNAC H 0 0 N N N 9.154 -3.309 12.537 -0.441 6.748 -1.528 HNAC D2R 37 D2R HNAA HNAA H 0 0 N N N 9.446 -3.172 10.936 0.932 6.016 -2.161 HNAA D2R 38 D2R HNAD HNAD H 0 0 N N N 9.909 0.172 14.890 -3.396 2.864 1.155 HNAD D2R 39 D2R HNAB HNAB H 0 0 N N N 11.469 0.615 15.084 -3.038 4.398 1.741 HNAB D2R 40 D2R HOAF HOAF H 0 0 N N N 10.594 5.471 7.021 7.678 -0.367 1.171 HOAF D2R 41 D2R HAI HAI H 0 1 N N N 20.247 1.895 12.139 -3.945 -3.936 -1.596 HAI D2R 42 D2R HAJ HAJ H 0 1 N N N 19.309 2.609 9.948 -1.527 -4.026 -2.028 HAJ D2R 43 D2R HAK HAK H 0 1 N N N 14.929 0.693 9.962 1.490 -0.450 -0.145 HAK D2R 44 D2R HAL HAL H 0 1 N N N 16.291 2.065 13.861 -3.278 -1.220 1.638 HAL D2R 45 D2R HAM HAM H 0 1 N N N 16.296 4.564 6.571 3.334 -3.826 -1.040 HAM D2R 46 D2R HAMA HAMA H 0 0 N N N 15.703 2.896 6.349 3.180 -2.455 -2.165 HAMA D2R 47 D2R HAN HAN H 0 1 N N N 13.658 3.352 7.490 3.352 -0.874 -0.263 HAN D2R 48 D2R HANA HANA H 0 0 N N N 14.291 4.923 8.129 3.506 -2.244 0.862 HANA D2R 49 D2R HAO HAO H 0 1 N N N 14.339 5.795 5.809 5.566 -2.974 -0.308 HAO D2R 50 D2R HAOA HAOA H 0 0 N N N 13.573 4.244 5.251 5.412 -1.604 -1.434 HAOA D2R 51 D2R HAP HAP H 0 1 N N N 14.734 3.305 10.797 0.340 -1.615 1.586 HAP D2R 52 D2R HAPA HAPA H 0 0 N N N 14.662 3.317 12.621 -1.049 -0.882 2.424 HAPA D2R 53 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal D2R C2 N1 DOUB Y N 1 D2R N1 C6 SING Y N 2 D2R N3 C2 SING Y N 3 D2R NAC C2 SING N N 4 D2R N3 C4 DOUB Y N 5 D2R NAQ C4 SING Y N 6 D2R C4 C5 SING Y N 7 D2R C5 CAX SING Y N 8 D2R C5 C6 DOUB Y N 9 D2R C6 NAD SING N N 10 D2R OAT CAA SING N N 11 D2R CAA HAA SING N N 12 D2R CAA HAAA SING N N 13 D2R CAA HAAB SING N N 14 D2R CAX CAB SING N N 15 D2R CAB HAB SING N N 16 D2R CAB HABA SING N N 17 D2R CAB HABB SING N N 18 D2R NAC HNAC SING N N 19 D2R NAC HNAA SING N N 20 D2R NAD HNAD SING N N 21 D2R NAD HNAB SING N N 22 D2R OAE CAU DOUB N N 23 D2R CAU OAF SING N N 24 D2R OAF HOAF SING N N 25 D2R CAM CAG SING N N 26 D2R CAG CAH TRIP N N 27 D2R CAH CAZ SING N N 28 D2R CAJ CAI DOUB Y N 29 D2R CAI CAY SING Y N 30 D2R CAI HAI SING N N 31 D2R CAZ CAJ SING Y N 32 D2R CAJ HAJ SING N N 33 D2R NAQ CAK DOUB Y N 34 D2R CAK CBA SING Y N 35 D2R CAK HAK SING N N 36 D2R CBB CAL SING Y N 37 D2R CAL CAY DOUB Y N 38 D2R CAL HAL SING N N 39 D2R CAM CAN SING N N 40 D2R CAM HAM SING N N 41 D2R CAM HAMA SING N N 42 D2R CAO CAN SING N N 43 D2R CAN HAN SING N N 44 D2R CAN HANA SING N N 45 D2R CAO CAU SING N N 46 D2R CAO HAO SING N N 47 D2R CAO HAOA SING N N 48 D2R CBA CAP SING N N 49 D2R CAP CBB SING N N 50 D2R CAP HAP SING N N 51 D2R CAP HAPA SING N N 52 D2R CAY OAT SING N N 53 D2R CBA CAX DOUB Y N 54 D2R CAZ CBB DOUB Y N 55 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor D2R SMILES ACDLabs 12.01 "O=C(O)CCCC#Cc1ccc(OC)cc1Cc2c(c3c(nc2)nc(nc3N)N)C" D2R InChI InChI 1.03 "InChI=1S/C22H23N5O3/c1-13-16(12-25-21-19(13)20(23)26-22(24)27-21)10-15-11-17(30-2)9-8-14(15)6-4-3-5-7-18(28)29/h8-9,11-12H,3,5,7,10H2,1-2H3,(H,28,29)(H4,23,24,25,26,27)" D2R InChIKey InChI 1.03 MAWHZPJVFGJFTF-UHFFFAOYSA-N D2R SMILES_CANONICAL CACTVS 3.370 "COc1ccc(C#CCCCC(O)=O)c(Cc2cnc3nc(N)nc(N)c3c2C)c1" D2R SMILES CACTVS 3.370 "COc1ccc(C#CCCCC(O)=O)c(Cc2cnc3nc(N)nc(N)c3c2C)c1" D2R SMILES_CANONICAL "OpenEye OEToolkits" 1.7.2 "Cc1c(cnc2c1c(nc(n2)N)N)Cc3cc(ccc3C#CCCCC(=O)O)OC" D2R SMILES "OpenEye OEToolkits" 1.7.2 "Cc1c(cnc2c1c(nc(n2)N)N)Cc3cc(ccc3C#CCCCC(=O)O)OC" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier D2R "SYSTEMATIC NAME" ACDLabs 12.01 "6-{2-[(2,4-diamino-5-methylpyrido[2,3-d]pyrimidin-6-yl)methyl]-4-methoxyphenyl}hex-5-ynoic acid" D2R "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.2 "6-[2-[[2,4-bis(azanyl)-5-methyl-pyrido[2,3-d]pyrimidin-6-yl]methyl]-4-methoxy-phenyl]hex-5-ynoic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site D2R "Create component" 2011-08-24 RCSB D2R "Modify synonyms" 2021-03-13 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id D2R _pdbx_chem_comp_synonyms.name "2,4-Diamino--5-methyl-6-[2'-(4-carboxy-1-pentynyl)-5'-methoxybenzyl]pyrido[2,3-d]pyrimidine" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? ##