data_D2V # _chem_comp.id D2V _chem_comp.name "(3S,5Z,7E,22E)-9,10-secoergosta-5,7,10,22-tetraen-3-ol" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H44 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "Vitamin D2; Ergocalciferol; Deltalin" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2008-04-30 _chem_comp.pdbx_modified_date 2020-05-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 396.648 _chem_comp.one_letter_code ? _chem_comp.three_letter_code D2V _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3CZH _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal D2V C1B C1B C 0 1 N N N -49.741 -2.459 -30.708 8.167 -2.328 0.387 C1B D2V 1 D2V C1W C1W C 0 1 N N N -48.989 -1.959 -29.451 6.833 -1.788 0.908 C1W D2V 2 D2V C1C C1C C 0 1 N N N -47.583 -1.422 -29.782 7.089 -0.572 1.800 C1C D2V 3 D2V C1X C1X C 0 1 N N S -48.958 -3.048 -28.345 5.953 -1.378 -0.274 C1X D2V 4 D2V C1D C1D C 0 1 N N N -48.527 -4.398 -28.918 5.698 -2.594 -1.167 C1D D2V 5 D2V C1J C1J C 0 1 N N N -48.000 -2.645 -27.155 4.639 -0.847 0.239 C1J D2V 6 D2V C1K C1K C 0 1 N N N -48.545 -2.010 -26.056 4.276 0.381 -0.039 C1K D2V 7 D2V C1Y C1Y C 0 1 N N R -47.703 -1.590 -24.838 2.962 0.912 0.474 C1Y D2V 8 D2V C1E C1E C 0 1 N N N -46.983 -2.801 -24.161 3.217 2.128 1.367 C1E D2V 9 D2V C2B C2B C 0 1 N N R -46.732 -0.440 -25.212 2.081 1.322 -0.707 C2B D2V 10 D2V C1Q C1Q C 0 1 N N N -47.463 0.695 -26.014 1.780 0.095 -1.607 C1Q D2V 11 D2V C1P C1P C 0 1 N N N -47.036 2.022 -25.343 0.231 -0.027 -1.675 C1P D2V 12 D2V C2A C2A C 0 1 N N S -45.736 1.589 -24.656 -0.234 1.401 -1.377 C2A D2V 13 D2V C2C C2C C 0 1 N N R -46.206 0.304 -23.965 0.722 1.794 -0.215 C2C D2V 14 D2V C1F C1F C 0 1 N N N -47.307 0.546 -22.891 0.339 1.008 1.040 C1F D2V 15 D2V C1R C1R C 0 1 N N N -45.006 -0.360 -23.310 0.529 3.268 0.056 C1R D2V 16 D2V C1L C1L C 0 1 N N N -44.477 0.553 -22.169 -0.881 3.452 0.642 C1L D2V 17 D2V C1M C1M C 0 1 N N N -44.125 1.981 -22.623 -1.961 2.948 -0.313 C1M D2V 18 D2V C1V C1V C 0 1 N N N -45.152 2.574 -23.605 -1.620 1.557 -0.826 C1V D2V 19 D2V C1I C1I C 0 1 N N N -45.521 3.930 -23.565 -2.492 0.549 -0.790 C1I D2V 20 D2V C1H C1H C 0 1 N N N -44.998 4.854 -22.626 -3.833 0.760 -0.242 C1H D2V 21 D2V C1U C1U C 0 1 N N N -45.366 6.222 -22.542 -4.715 -0.260 -0.205 C1U D2V 22 D2V C1S C1S C 0 1 N N N -44.690 7.093 -21.486 -6.112 -0.083 0.355 C1S D2V 23 D2V C1Z C1Z C 0 1 N N S -43.966 8.280 -22.176 -6.407 -1.254 1.297 C1Z D2V 24 D2V O1G O1G O 0 1 N N N -42.758 7.842 -22.749 -7.740 -1.137 1.799 O1G D2V 25 D2V C1O C1O C 0 1 N N N -44.863 8.978 -23.260 -6.263 -2.576 0.542 C1O D2V 26 D2V C1N C1N C 0 1 N N N -45.641 8.016 -24.202 -4.800 -2.785 0.137 C1N D2V 27 D2V C1T C1T C 0 1 N N N -46.224 6.868 -23.434 -4.368 -1.603 -0.715 C1T D2V 28 D2V C1A C1A C 0 1 N N N -47.551 6.543 -23.655 -3.707 -1.766 -1.861 C1A D2V 29 D2V H1B H1B H 0 1 N N N -50.809 -2.578 -30.474 8.795 -2.620 1.229 H1B D2V 30 D2V H1BA H1BA H 0 0 N N N -49.623 -1.727 -31.521 7.986 -3.194 -0.249 H1BA D2V 31 D2V H1BB H1BB H 0 0 N N N -49.325 -3.428 -31.023 8.672 -1.553 -0.190 H1BB D2V 32 D2V H1W H1W H 0 1 N N N -49.554 -1.103 -29.053 6.329 -2.563 1.485 H1W D2V 33 D2V H1C H1C H 0 1 N N N -47.486 -1.294 -30.870 6.139 -0.188 2.171 H1C D2V 34 D2V H1CA H1CA H 0 0 N N N -47.434 -0.452 -29.284 7.716 -0.865 2.642 H1CA D2V 35 D2V H1CB H1CB H 0 0 N N N -46.825 -2.136 -29.428 7.593 0.203 1.223 H1CB D2V 36 D2V H1X H1X H 0 1 N N N -49.981 -3.134 -27.951 6.457 -0.603 -0.851 H1X D2V 37 D2V H1D H1D H 0 1 N N N -48.423 -4.317 -30.010 5.193 -3.369 -0.590 H1D D2V 38 D2V H1DA H1DA H 0 0 N N N -47.562 -4.691 -28.479 5.070 -2.302 -2.009 H1DA D2V 39 D2V H1DB H1DB H 0 0 N N N -49.286 -5.157 -28.677 6.648 -2.978 -1.538 H1DB D2V 40 D2V H1J H1J H 0 1 N N N -46.943 -2.861 -27.200 3.997 -1.478 0.835 H1J D2V 41 D2V H1K H1K H 0 1 N N N -49.604 -1.800 -26.051 4.917 1.012 -0.635 H1K D2V 42 D2V H1Y H1Y H 0 1 N N N -48.391 -1.200 -24.074 2.457 0.137 1.051 H1Y D2V 43 D2V H1E H1E H 0 1 N N N -46.814 -3.591 -24.907 3.722 2.903 0.790 H1E D2V 44 D2V H1EA H1EA H 0 0 N N N -46.017 -2.471 -23.752 2.267 2.512 1.738 H1EA D2V 45 D2V H1EB H1EB H 0 0 N N N -47.612 -3.193 -23.348 3.844 1.835 2.209 H1EB D2V 46 D2V H2B H2B H 0 1 N N N -45.932 -0.933 -25.785 2.569 2.106 -1.288 H2B D2V 47 D2V H1Q H1Q H 0 1 N N N -47.164 0.679 -27.072 2.187 0.253 -2.605 H1Q D2V 48 D2V H1QA H1QA H 0 0 N N N -48.555 0.565 -25.995 2.207 -0.806 -1.166 H1QA D2V 49 D2V H1P H1P H 0 1 N N N -46.878 2.830 -26.072 -0.089 -0.337 -2.669 H1P D2V 50 D2V H1PA H1PA H 0 0 N N N -47.788 2.448 -24.662 -0.136 -0.719 -0.916 H1PA D2V 51 D2V H2A H2A H 0 1 N N N -44.909 1.506 -25.377 -0.080 2.045 -2.242 H2A D2V 52 D2V H1F H1F H 0 1 N N N -46.843 0.603 -21.895 1.000 1.287 1.860 H1F D2V 53 D2V H1FA H1FA H 0 0 N N N -47.828 1.490 -23.107 -0.692 1.235 1.311 H1FA D2V 54 D2V H1FB H1FB H 0 0 N N N -48.028 -0.284 -22.912 0.435 -0.060 0.844 H1FB D2V 55 D2V H1R H1R H 0 1 N N N -45.305 -1.334 -22.894 1.275 3.614 0.771 H1R D2V 56 D2V H1RA H1RA H 0 0 N N N -44.214 -0.513 -24.058 0.620 3.830 -0.874 H1RA D2V 57 D2V H1L H1L H 0 1 N N N -45.260 0.624 -21.400 -0.950 2.900 1.579 H1L D2V 58 D2V H1LA H1LA H 0 0 N N N -43.548 0.096 -21.797 -1.048 4.510 0.841 H1LA D2V 59 D2V H1M H1M H 0 1 N N N -44.087 2.626 -21.733 -2.916 2.913 0.212 H1M D2V 60 D2V H1MA H1MA H 0 0 N N N -43.159 1.932 -23.146 -2.042 3.633 -1.157 H1MA D2V 61 D2V H1I H1I H 0 1 N N N -46.240 4.286 -24.287 -2.209 -0.424 -1.166 H1I D2V 62 D2V H1H H1H H 0 1 N N N -44.265 4.490 -21.922 -4.116 1.732 0.134 H1H D2V 63 D2V H1S H1S H 0 1 N N N -45.449 7.481 -20.791 -6.170 0.856 0.906 H1S D2V 64 D2V H1SA H1SA H 0 0 N N N -43.956 6.491 -20.930 -6.836 -0.076 -0.460 H1SA D2V 65 D2V H1Z H1Z H 0 1 N N N -43.753 9.030 -21.400 -5.704 -1.235 2.130 H1Z D2V 66 D2V HO1G HO1G H 0 0 N N N -42.870 7.743 -23.687 -7.903 -0.322 2.295 HO1G D2V 67 D2V H1O H1O H 0 1 N N N -45.604 9.594 -22.730 -6.582 -3.397 1.184 H1O D2V 68 D2V H1OA H1OA H 0 0 N N N -44.178 9.549 -23.903 -6.887 -2.553 -0.351 H1OA D2V 69 D2V H1N H1N H 0 1 N N N -46.456 8.572 -24.687 -4.177 -2.847 1.029 H1N D2V 70 D2V H1NA H1NA H 0 0 N N N -44.942 7.618 -24.953 -4.708 -3.705 -0.441 H1NA D2V 71 D2V H1A H1A H 0 1 N N N -47.783 5.704 -23.016 -3.412 -0.905 -2.441 H1A D2V 72 D2V H1AA H1AA H 0 0 N N N -48.227 7.036 -24.338 -3.467 -2.760 -2.209 H1AA D2V 73 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal D2V C1B C1W SING N N 1 D2V C1W C1C SING N N 2 D2V C1W C1X SING N N 3 D2V C1X C1D SING N N 4 D2V C1X C1J SING N N 5 D2V C1J C1K DOUB N N 6 D2V C1K C1Y SING N N 7 D2V C1Y C1E SING N N 8 D2V C1Y C2B SING N N 9 D2V C2B C1Q SING N N 10 D2V C2B C2C SING N N 11 D2V C1Q C1P SING N N 12 D2V C1P C2A SING N N 13 D2V C2A C2C SING N N 14 D2V C2A C1V SING N N 15 D2V C2C C1F SING N N 16 D2V C2C C1R SING N E 17 D2V C1R C1L SING N N 18 D2V C1L C1M SING N N 19 D2V C1M C1V SING N N 20 D2V C1V C1I DOUB N N 21 D2V C1I C1H SING N N 22 D2V C1H C1U DOUB N N 23 D2V C1U C1S SING N N 24 D2V C1U C1T SING N N 25 D2V C1S C1Z SING N N 26 D2V C1Z O1G SING N N 27 D2V C1Z C1O SING N N 28 D2V C1O C1N SING N N 29 D2V C1N C1T SING N N 30 D2V C1T C1A DOUB N N 31 D2V C1B H1B SING N N 32 D2V C1B H1BA SING N N 33 D2V C1B H1BB SING N N 34 D2V C1W H1W SING N N 35 D2V C1C H1C SING N N 36 D2V C1C H1CA SING N N 37 D2V C1C H1CB SING N N 38 D2V C1X H1X SING N N 39 D2V C1D H1D SING N N 40 D2V C1D H1DA SING N N 41 D2V C1D H1DB SING N N 42 D2V C1J H1J SING N N 43 D2V C1K H1K SING N N 44 D2V C1Y H1Y SING N N 45 D2V C1E H1E SING N N 46 D2V C1E H1EA SING N N 47 D2V C1E H1EB SING N N 48 D2V C2B H2B SING N N 49 D2V C1Q H1Q SING N N 50 D2V C1Q H1QA SING N N 51 D2V C1P H1P SING N N 52 D2V C1P H1PA SING N E 53 D2V C2A H2A SING N N 54 D2V C1F H1F SING N N 55 D2V C1F H1FA SING N Z 56 D2V C1F H1FB SING N N 57 D2V C1R H1R SING N N 58 D2V C1R H1RA SING N N 59 D2V C1L H1L SING N N 60 D2V C1L H1LA SING N N 61 D2V C1M H1M SING N N 62 D2V C1M H1MA SING N N 63 D2V C1I H1I SING N N 64 D2V C1H H1H SING N N 65 D2V C1S H1S SING N N 66 D2V C1S H1SA SING N N 67 D2V C1Z H1Z SING N N 68 D2V O1G HO1G SING N N 69 D2V C1O H1O SING N N 70 D2V C1O H1OA SING N N 71 D2V C1N H1N SING N N 72 D2V C1N H1NA SING N N 73 D2V C1A H1A SING N N 74 D2V C1A H1AA SING N N 75 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor D2V SMILES ACDLabs 10.04 "OC3CC(=C/C=C1\CCCC2(C)C(C(/C=C/C(C)C(C)C)C)CCC12)/C(=C)CC3" D2V SMILES_CANONICAL CACTVS 3.341 "CC(C)[C@@H](C)\C=C\[C@@H](C)[C@H]1CC[C@H]2\C(CCC[C@]12C)=C\C=C3\C[C@@H](O)CCC3=C" D2V SMILES CACTVS 3.341 "CC(C)[CH](C)C=C[CH](C)[CH]1CC[CH]2C(CCC[C]12C)=CC=C3C[CH](O)CCC3=C" D2V SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CC(C)[C@@H](C)\C=C\[C@@H](C)[C@H]1CC[C@@H]\2[C@@]1(CCC/C2=C\C=C/3\C[C@H](CCC3=C)O)C" D2V SMILES "OpenEye OEToolkits" 1.5.0 "CC(C)C(C)C=CC(C)C1CCC2C1(CCCC2=CC=C3CC(CCC3=C)O)C" D2V InChI InChI 1.03 "InChI=1S/C28H44O/c1-19(2)20(3)9-10-22(5)26-15-16-27-23(8-7-17-28(26,27)6)12-13-24-18-25(29)14-11-21(24)4/h9-10,12-13,19-20,22,25-27,29H,4,7-8,11,14-18H2,1-3,5-6H3/b10-9+,23-12+,24-13-/t20-,22+,25-,26+,27-,28+/m0/s1" D2V InChIKey InChI 1.03 MECHNRXZTMCUDQ-RKHKHRCZSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier D2V "SYSTEMATIC NAME" ACDLabs 10.04 "(3S,5Z,7E,22E)-9,10-secoergosta-5,7,10,22-tetraen-3-ol" D2V "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(1S,3Z)-3-[(2E)-2-[(1R,3aS,7aR)-1-[(E,2R,5R)-5,6-dimethylhept-3-en-2-yl]-7a-methyl-2,3,3a,5,6,7-hexahydro-1H-inden-4-ylidene]ethylidene]-4-methylidene-cyclohexan-1-ol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site D2V "Create component" 2008-04-30 RCSB D2V "Modify descriptor" 2011-06-04 RCSB D2V "Modify synonyms" 2020-05-27 PDBE # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 D2V "Vitamin D2" ? ? 2 D2V Ergocalciferol ? ? 3 D2V Deltalin ? ? #