data_D3R # _chem_comp.id D3R _chem_comp.name "~{tert}-butyl (2'~{R},3~{R})-2'-[3-[4-(hydroxymethyl)-3-methylsulfonyl-phenyl]phenyl]-2-oxidanylidene-spiro[1~{H}-indole-3,3'-pyrrolidine]-1'-carboxylate" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C30 H32 N2 O6 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2019-06-19 _chem_comp.pdbx_modified_date 2020-04-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 548.650 _chem_comp.one_letter_code ? _chem_comp.three_letter_code D3R _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6K9G _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal D3R C6 C1 C 0 1 Y N N -16.313 22.161 2.010 1.075 -2.469 1.684 C6 D3R 1 D3R C2 C2 C 0 1 Y N N -16.174 22.555 -0.364 -0.106 -4.506 1.251 C2 D3R 2 D3R C8 C3 C 0 1 N N N -12.618 22.085 2.559 3.476 -2.816 -1.181 C8 D3R 3 D3R C5 C4 C 0 1 Y N N -14.928 22.192 2.091 1.892 -2.713 0.602 C5 D3R 4 D3R C4 C5 C 0 1 Y N N -14.178 22.382 0.936 1.722 -3.860 -0.169 C4 D3R 5 D3R C13 C6 C 0 1 N N N -14.159 20.858 4.177 4.188 -1.761 0.988 C13 D3R 6 D3R C14 C7 C 0 1 N N N -12.149 23.276 6.053 3.844 1.648 -0.350 C14 D3R 7 D3R C17 C8 C 0 1 N N N -10.855 25.514 6.217 4.936 3.769 -0.277 C17 D3R 8 D3R C18 C9 C 0 1 N N N -10.630 25.402 7.733 3.815 4.406 0.545 C18 D3R 9 D3R C3 C10 C 0 1 Y N N -14.787 22.577 -0.299 0.711 -4.756 0.168 C3 D3R 10 D3R C10 C11 C 0 1 N N R -13.956 23.322 4.246 2.649 -0.557 -0.448 C10 D3R 11 D3R C9 C12 C 0 1 N N R -13.979 22.097 3.267 3.041 -1.973 -0.016 C9 D3R 12 D3R C19 C13 C 0 1 N N N -9.591 25.076 5.461 4.692 4.034 -1.764 C19 D3R 13 D3R C20 C14 C 0 1 N N N -11.378 26.918 5.811 6.279 4.375 0.134 C20 D3R 14 D3R C21 C15 C 0 1 Y N N -15.320 23.980 4.546 1.441 -0.099 0.329 C21 D3R 15 D3R O22 O1 O 0 1 N N N -11.532 21.914 3.093 4.383 -2.578 -1.950 O22 D3R 16 D3R C1 C16 C 0 1 Y N N -16.930 22.345 0.780 0.076 -3.367 2.014 C1 D3R 17 D3R N7 N1 N 0 1 N N N -12.828 22.275 1.238 2.663 -3.891 -1.202 N7 D3R 18 D3R N11 N2 N 0 1 N N N -13.208 22.681 5.348 3.798 0.316 -0.153 N11 D3R 19 D3R C12 C17 C 0 1 N N N -13.579 21.266 5.527 4.890 -0.511 0.395 C12 D3R 20 D3R O15 O2 O 0 1 N N N -11.413 22.668 6.793 2.880 2.228 -0.809 O15 D3R 21 D3R O16 O3 O 0 1 N N N -11.958 24.631 5.782 4.958 2.337 -0.038 O16 D3R 22 D3R C23 C18 C 0 1 Y N N -15.524 25.230 3.934 1.588 0.364 1.624 C23 D3R 23 D3R C24 C19 C 0 1 Y N N -16.739 25.876 4.084 0.484 0.786 2.342 C24 D3R 24 D3R C25 C20 C 0 1 Y N N -17.760 25.307 4.828 -0.771 0.748 1.770 C25 D3R 25 D3R C26 C21 C 0 1 Y N N -17.591 24.067 5.452 -0.925 0.283 0.465 C26 D3R 26 D3R C27 C22 C 0 1 Y N N -16.359 23.415 5.313 0.192 -0.137 -0.256 C27 D3R 27 D3R C28 C23 C 0 1 Y N N -18.723 23.415 6.200 -2.272 0.239 -0.156 C28 D3R 28 D3R C29 C24 C 0 1 Y N N -19.747 24.176 6.778 -3.387 0.669 0.562 C29 D3R 29 D3R C30 C25 C 0 1 Y N N -20.823 23.556 7.408 -4.637 0.626 -0.021 C30 D3R 30 D3R C31 C26 C 0 1 Y N N -20.922 22.160 7.494 -4.785 0.159 -1.314 C31 D3R 31 D3R C32 C27 C 0 1 Y N N -19.888 21.421 6.924 -3.682 -0.269 -2.031 C32 D3R 32 D3R C33 C28 C 0 1 Y N N -18.818 22.028 6.293 -2.426 -0.226 -1.460 C33 D3R 33 D3R C34 C29 C 0 1 N N N -22.074 21.349 8.109 -6.153 0.114 -1.945 C34 D3R 34 D3R O35 O4 O 0 1 N N N -21.642 20.270 8.856 -6.068 -0.518 -3.223 O35 D3R 35 D3R S36 S1 S 0 1 N N N -22.095 24.507 8.049 -6.048 1.168 0.885 S36 D3R 36 D3R O37 O5 O 0 1 N N N -22.511 24.045 9.330 -6.991 0.116 0.727 O37 D3R 37 D3R O38 O6 O 0 1 N N N -23.112 24.667 7.081 -5.534 1.504 2.166 O38 D3R 38 D3R C39 C30 C 0 1 N N N -21.558 26.025 8.476 -6.603 2.657 0.011 C39 D3R 39 D3R H1 H1 H 0 1 N N N -16.906 21.995 2.897 1.217 -1.577 2.276 H1 D3R 40 D3R H2 H2 H 0 1 N N N -16.668 22.703 -1.313 -0.888 -5.205 1.507 H2 D3R 41 D3R H3 H3 H 0 1 N N N -15.225 20.604 4.276 3.800 -1.555 1.986 H3 D3R 42 D3R H4 H4 H 0 1 N N N -13.613 19.996 3.767 4.861 -2.618 1.001 H4 D3R 43 D3R H5 H5 H 0 1 N N N -11.540 25.718 8.264 2.858 3.974 0.252 H5 D3R 44 D3R H6 H6 H 0 1 N N N -10.397 24.359 7.993 3.989 4.218 1.605 H6 D3R 45 D3R H7 H7 H 0 1 N N N -9.791 26.049 8.028 3.799 5.482 0.366 H7 D3R 46 D3R H8 H8 H 0 1 N N N -14.195 22.742 -1.187 0.563 -5.648 -0.423 H8 D3R 47 D3R H9 H9 H 0 1 N N N -13.312 24.089 3.792 2.433 -0.540 -1.516 H9 D3R 48 D3R H10 H10 H 0 1 N N N -8.745 25.713 5.760 4.675 5.109 -1.944 H10 D3R 49 D3R H11 H11 H 0 1 N N N -9.364 24.027 5.703 5.490 3.580 -2.351 H11 D3R 50 D3R H12 H12 H 0 1 N N N -9.759 25.174 4.378 3.735 3.602 -2.058 H12 D3R 51 D3R H13 H13 H 0 1 N N N -12.280 27.157 6.394 6.453 4.186 1.194 H13 D3R 52 D3R H14 H14 H 0 1 N N N -10.602 27.671 6.012 7.078 3.921 -0.452 H14 D3R 53 D3R H15 H15 H 0 1 N N N -11.623 26.922 4.739 6.263 5.450 -0.045 H15 D3R 54 D3R H16 H16 H 0 1 N N N -18.008 22.324 0.713 -0.565 -3.175 2.862 H16 D3R 55 D3R H17 H17 H 0 1 N N N -12.097 22.332 0.558 2.723 -4.603 -1.858 H17 D3R 56 D3R H18 H18 H 0 1 N N N -14.330 21.157 6.323 5.421 0.032 1.177 H18 D3R 57 D3R H19 H19 H 0 1 N N N -12.695 20.659 5.771 5.578 -0.803 -0.398 H19 D3R 58 D3R H20 H20 H 0 1 N N N -14.737 25.683 3.350 2.569 0.396 2.076 H20 D3R 59 D3R H21 H21 H 0 1 N N N -16.893 26.836 3.615 0.605 1.146 3.353 H21 D3R 60 D3R H22 H22 H 0 1 N N N -18.700 25.829 4.927 -1.632 1.078 2.332 H22 D3R 61 D3R H23 H23 H 0 1 N N N -16.203 22.464 5.801 0.078 -0.494 -1.268 H23 D3R 62 D3R H24 H24 H 0 1 N N N -19.702 25.254 6.735 -3.273 1.033 1.572 H24 D3R 63 D3R H25 H25 H 0 1 N N N -19.923 20.343 6.976 -3.803 -0.633 -3.040 H25 D3R 64 D3R H26 H26 H 0 1 N N N -18.040 21.415 5.863 -1.564 -0.556 -2.022 H26 D3R 65 D3R H27 H27 H 0 1 N N N -22.660 22.013 8.761 -6.830 -0.451 -1.304 H27 D3R 66 D3R H28 H28 H 0 1 N N N -22.713 20.977 7.295 -6.530 1.130 -2.066 H28 D3R 67 D3R H29 H29 H 0 1 N N N -22.393 19.808 9.210 -6.913 -0.582 -3.688 H29 D3R 68 D3R H30 H30 H 0 1 N N N -20.763 25.934 9.231 -6.959 2.384 -0.983 H30 D3R 69 D3R H31 H31 H 0 1 N N N -21.162 26.537 7.587 -7.412 3.127 0.570 H31 D3R 70 D3R H32 H32 H 0 1 N N N -22.394 26.606 8.892 -5.771 3.355 -0.081 H32 D3R 71 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal D3R C2 C3 DOUB Y N 1 D3R C2 C1 SING Y N 2 D3R C3 C4 SING Y N 3 D3R C1 C6 DOUB Y N 4 D3R C4 N7 SING N N 5 D3R C4 C5 DOUB Y N 6 D3R N7 C8 SING N N 7 D3R C6 C5 SING Y N 8 D3R C5 C9 SING N N 9 D3R C8 O22 DOUB N N 10 D3R C8 C9 SING N N 11 D3R C9 C13 SING N N 12 D3R C9 C10 SING N N 13 D3R C23 C24 DOUB Y N 14 D3R C23 C21 SING Y N 15 D3R C24 C25 SING Y N 16 D3R C13 C12 SING N N 17 D3R C10 C21 SING N N 18 D3R C10 N11 SING N N 19 D3R C21 C27 DOUB Y N 20 D3R C25 C26 DOUB Y N 21 D3R C27 C26 SING Y N 22 D3R N11 C12 SING N N 23 D3R N11 C14 SING N N 24 D3R C26 C28 SING N N 25 D3R C19 C17 SING N N 26 D3R O16 C14 SING N N 27 D3R O16 C17 SING N N 28 D3R C20 C17 SING N N 29 D3R C14 O15 DOUB N N 30 D3R C28 C33 DOUB Y N 31 D3R C28 C29 SING Y N 32 D3R C17 C18 SING N N 33 D3R C33 C32 SING Y N 34 D3R C29 C30 DOUB Y N 35 D3R C32 C31 DOUB Y N 36 D3R O38 S36 DOUB N N 37 D3R C30 C31 SING Y N 38 D3R C30 S36 SING N N 39 D3R C31 C34 SING N N 40 D3R S36 C39 SING N N 41 D3R S36 O37 DOUB N N 42 D3R C34 O35 SING N N 43 D3R C6 H1 SING N N 44 D3R C2 H2 SING N N 45 D3R C13 H3 SING N N 46 D3R C13 H4 SING N N 47 D3R C18 H5 SING N N 48 D3R C18 H6 SING N N 49 D3R C18 H7 SING N N 50 D3R C3 H8 SING N N 51 D3R C10 H9 SING N N 52 D3R C19 H10 SING N N 53 D3R C19 H11 SING N N 54 D3R C19 H12 SING N N 55 D3R C20 H13 SING N N 56 D3R C20 H14 SING N N 57 D3R C20 H15 SING N N 58 D3R C1 H16 SING N N 59 D3R N7 H17 SING N N 60 D3R C12 H18 SING N N 61 D3R C12 H19 SING N N 62 D3R C23 H20 SING N N 63 D3R C24 H21 SING N N 64 D3R C25 H22 SING N N 65 D3R C27 H23 SING N N 66 D3R C29 H24 SING N N 67 D3R C32 H25 SING N N 68 D3R C33 H26 SING N N 69 D3R C34 H27 SING N N 70 D3R C34 H28 SING N N 71 D3R O35 H29 SING N N 72 D3R C39 H30 SING N N 73 D3R C39 H31 SING N N 74 D3R C39 H32 SING N N 75 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor D3R InChI InChI 1.03 "InChI=1S/C30H32N2O6S/c1-29(2,3)38-28(35)32-15-14-30(23-10-5-6-11-24(23)31-27(30)34)26(32)21-9-7-8-19(16-21)20-12-13-22(18-33)25(17-20)39(4,36)37/h5-13,16-17,26,33H,14-15,18H2,1-4H3,(H,31,34)/t26-,30-/m1/s1" D3R InChIKey InChI 1.03 WCOXMLFEWOILDZ-PDDLMNHVSA-N D3R SMILES_CANONICAL CACTVS 3.385 "CC(C)(C)OC(=O)N1CC[C@@]2([C@H]1c3cccc(c3)c4ccc(CO)c(c4)[S](C)(=O)=O)C(=O)Nc5ccccc25" D3R SMILES CACTVS 3.385 "CC(C)(C)OC(=O)N1CC[C]2([CH]1c3cccc(c3)c4ccc(CO)c(c4)[S](C)(=O)=O)C(=O)Nc5ccccc25" D3R SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)(C)OC(=O)N1CC[C@]2([C@H]1c3cccc(c3)c4ccc(c(c4)S(=O)(=O)C)CO)c5ccccc5NC2=O" D3R SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)(C)OC(=O)N1CCC2(C1c3cccc(c3)c4ccc(c(c4)S(=O)(=O)C)CO)c5ccccc5NC2=O" # _pdbx_chem_comp_identifier.comp_id D3R _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{tert}-butyl (2'~{R},3~{R})-2'-[3-[4-(hydroxymethyl)-3-methylsulfonyl-phenyl]phenyl]-2-oxidanylidene-spiro[1~{H}-indole-3,3'-pyrrolidine]-1'-carboxylate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site D3R "Create component" 2019-06-19 PDBJ D3R "Initial release" 2020-04-22 RCSB ##