data_D47 # _chem_comp.id D47 _chem_comp.name "(3S,6S)-3-[(2-chlorophenyl)sulfanyl]-6-{6-[(4-fluorophenyl)amino]pyridin-2-yl}-6-(thiophen-3-yl)piperidine-2,4-dione" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H19 Cl F N3 O2 S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2017-10-17 _chem_comp.pdbx_modified_date 2018-10-19 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 524.029 _chem_comp.one_letter_code ? _chem_comp.three_letter_code D47 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6BAZ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal D47 C4 C1 C 0 1 Y N N -7.635 -16.280 17.919 4.902 -0.746 -0.275 C4 D47 1 D47 C14 C2 C 0 1 N N N -9.229 -13.066 21.163 0.155 -2.181 1.786 C14 D47 2 D47 C5 C3 C 0 1 Y N N -8.504 -15.271 18.379 3.734 -0.586 0.463 C5 D47 3 D47 C6 C4 C 0 1 Y N N -9.877 -15.539 18.446 3.514 0.595 1.162 C6 D47 4 D47 C11 C5 C 0 1 N N N -11.325 -11.588 19.879 -0.486 -0.612 -0.505 C11 D47 5 D47 C8 C6 C 0 1 N N S -8.954 -12.642 19.746 1.159 -1.122 1.418 C8 D47 6 D47 C9 C7 C 0 1 N N N -10.218 -12.192 19.026 0.475 -0.091 0.546 C9 D47 7 D47 C12 C8 C 0 1 N N S -11.661 -12.541 21.045 -1.592 -1.391 0.214 C12 D47 8 D47 C3 C9 C 0 1 Y N N -8.128 -17.536 17.562 5.839 0.269 -0.311 C3 D47 9 D47 C1 C10 C 0 1 Y N N -10.359 -16.796 18.083 4.455 1.605 1.121 C1 D47 10 D47 C2 C11 C 0 1 Y N N -9.492 -17.800 17.663 5.615 1.443 0.386 C2 D47 11 D47 S7 S1 S 0 1 N N N -7.801 -13.709 18.833 2.536 -1.877 0.511 S7 D47 12 D47 O10 O1 O 0 1 N N N -10.364 -12.306 17.836 0.685 1.091 0.680 O10 D47 13 D47 N13 N1 N 0 1 N N N -10.433 -12.951 21.732 -1.032 -2.304 1.198 N13 D47 14 D47 O15 O2 O 0 1 N N N -8.300 -13.458 21.832 0.446 -2.967 2.662 O15 D47 15 D47 C16 C12 C 0 1 Y N N -12.250 -13.841 20.530 -2.381 -2.178 -0.800 C16 D47 16 D47 C17 C13 C 0 1 Y N N -13.006 -13.969 19.368 -3.001 -3.377 -0.493 C17 D47 17 D47 C18 C14 C 0 1 Y N N -13.415 -15.206 19.092 -3.659 -3.945 -1.505 C18 D47 18 D47 S19 S2 S 0 1 Y N N -12.855 -16.282 20.361 -3.511 -2.941 -2.941 S19 D47 19 D47 C20 C15 C 0 1 Y N N -12.070 -14.976 21.210 -2.540 -1.770 -2.060 C20 D47 20 D47 C21 C16 C 0 1 Y N N -12.659 -11.888 21.986 -2.511 -0.419 0.907 C21 D47 21 D47 C22 C17 C 0 1 Y N N -12.336 -10.728 22.687 -3.524 -0.896 1.714 C22 D47 22 D47 C23 C18 C 0 1 Y N N -13.288 -10.167 23.539 -4.368 0.005 2.351 C23 D47 23 D47 C24 C19 C 0 1 Y N N -14.541 -10.764 23.661 -4.161 1.358 2.150 C24 D47 24 D47 C25 C20 C 0 1 Y N N -14.820 -11.916 22.916 -3.121 1.768 1.324 C25 D47 25 D47 N26 N2 N 0 1 Y N N -13.868 -12.429 22.136 -2.334 0.878 0.739 N26 D47 26 D47 N27 N3 N 0 1 N N N -16.067 -12.539 23.071 -2.901 3.125 1.114 N27 D47 27 D47 C28 C21 C 0 1 Y N N -16.705 -13.407 22.159 -1.936 3.543 0.191 C28 D47 28 D47 C29 C22 C 0 1 Y N N -16.008 -14.411 21.467 -1.697 2.793 -0.953 C29 D47 29 D47 C30 C23 C 0 1 Y N N -16.681 -15.256 20.596 -0.745 3.208 -1.863 C30 D47 30 D47 C31 C24 C 0 1 Y N N -18.062 -15.139 20.449 -0.028 4.371 -1.635 C31 D47 31 D47 C32 C25 C 0 1 Y N N -18.776 -14.178 21.161 -0.265 5.121 -0.495 C32 D47 32 D47 C33 C26 C 0 1 Y N N -18.098 -13.324 22.022 -1.220 4.712 0.415 C33 D47 33 D47 F34 F1 F 0 1 N N N -18.709 -15.964 19.603 0.904 4.775 -2.526 F34 D47 34 D47 CL35 CL1 CL 0 0 N N N -5.926 -15.983 17.816 5.185 -2.221 -1.145 CL35 D47 35 D47 H1 H1 H 0 1 N N N -10.562 -14.773 18.778 2.608 0.723 1.735 H1 D47 36 D47 H2 H2 H 0 1 N N N -10.990 -10.621 20.282 -0.921 0.226 -1.049 H2 D47 37 D47 H3 H3 H 0 1 N N N -12.222 -11.436 19.260 0.037 -1.270 -1.198 H3 D47 38 D47 H4 H4 H 0 1 N N N -8.366 -11.718 19.852 1.535 -0.644 2.323 H4 D47 39 D47 H5 H5 H 0 1 N N N -7.453 -18.302 17.208 6.746 0.147 -0.884 H5 D47 40 D47 H6 H6 H 0 1 N N N -11.420 -16.993 18.128 4.285 2.523 1.665 H6 D47 41 D47 H7 H7 H 0 1 N N N -9.875 -18.779 17.416 6.349 2.235 0.357 H7 D47 42 D47 H8 H8 H 0 1 N N N -10.502 -13.162 22.707 -1.572 -3.070 1.448 H8 D47 43 D47 H9 H9 H 0 1 N N N -13.244 -13.126 18.736 -2.955 -3.820 0.491 H9 D47 44 D47 H10 H10 H 0 1 N N N -13.995 -15.499 18.230 -4.199 -4.878 -1.451 H10 D47 45 D47 H11 H11 H 0 1 N N N -11.525 -15.070 22.138 -2.132 -0.860 -2.475 H11 D47 46 D47 H12 H12 H 0 1 N N N -11.364 -10.270 22.573 -3.659 -1.959 1.850 H12 D47 47 D47 H13 H13 H 0 1 N N N -13.055 -9.275 24.101 -5.168 -0.343 2.987 H13 D47 48 D47 H14 H14 H 0 1 N N N -15.286 -10.344 24.321 -4.799 2.086 2.629 H14 D47 49 D47 H15 H15 H 0 1 N N N -16.558 -12.347 23.921 -3.417 3.782 1.607 H15 D47 50 D47 H16 H16 H 0 1 N N N -14.944 -14.526 21.613 -2.256 1.886 -1.131 H16 D47 51 D47 H17 H17 H 0 1 N N N -16.137 -16.001 20.034 -0.558 2.625 -2.753 H17 D47 52 D47 H18 H18 H 0 1 N N N -19.847 -14.097 21.045 0.295 6.027 -0.319 H18 D47 53 D47 H19 H19 H 0 1 N N N -18.649 -12.590 22.591 -1.405 5.297 1.304 H19 D47 54 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal D47 C3 C2 DOUB Y N 1 D47 C3 C4 SING Y N 2 D47 C2 C1 SING Y N 3 D47 CL35 C4 SING N N 4 D47 O10 C9 DOUB N N 5 D47 C4 C5 DOUB Y N 6 D47 C1 C6 DOUB Y N 7 D47 C5 C6 SING Y N 8 D47 C5 S7 SING N N 9 D47 S7 C8 SING N N 10 D47 C9 C8 SING N N 11 D47 C9 C11 SING N N 12 D47 C18 C17 DOUB Y N 13 D47 C18 S19 SING Y N 14 D47 C17 C16 SING Y N 15 D47 F34 C31 SING N N 16 D47 C8 C14 SING N N 17 D47 C11 C12 SING N N 18 D47 S19 C20 SING Y N 19 D47 C31 C30 DOUB Y N 20 D47 C31 C32 SING Y N 21 D47 C16 C12 SING N N 22 D47 C16 C20 DOUB Y N 23 D47 C30 C29 SING Y N 24 D47 C12 N13 SING N N 25 D47 C12 C21 SING N N 26 D47 C32 C33 DOUB Y N 27 D47 C14 N13 SING N N 28 D47 C14 O15 DOUB N N 29 D47 C29 C28 DOUB Y N 30 D47 C21 N26 DOUB Y N 31 D47 C21 C22 SING Y N 32 D47 C33 C28 SING Y N 33 D47 N26 C25 SING Y N 34 D47 C28 N27 SING N N 35 D47 C22 C23 DOUB Y N 36 D47 C25 N27 SING N N 37 D47 C25 C24 DOUB Y N 38 D47 C23 C24 SING Y N 39 D47 C6 H1 SING N N 40 D47 C11 H2 SING N N 41 D47 C11 H3 SING N N 42 D47 C8 H4 SING N N 43 D47 C3 H5 SING N N 44 D47 C1 H6 SING N N 45 D47 C2 H7 SING N N 46 D47 N13 H8 SING N N 47 D47 C17 H9 SING N N 48 D47 C18 H10 SING N N 49 D47 C20 H11 SING N N 50 D47 C22 H12 SING N N 51 D47 C23 H13 SING N N 52 D47 C24 H14 SING N N 53 D47 N27 H15 SING N N 54 D47 C29 H16 SING N N 55 D47 C30 H17 SING N N 56 D47 C32 H18 SING N N 57 D47 C33 H19 SING N N 58 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor D47 SMILES ACDLabs 12.01 "c1(c(cccc1)SC2C(NC(CC2=O)(c3nc(ccc3)Nc4ccc(cc4)F)c5cscc5)=O)Cl" D47 InChI InChI 1.03 "InChI=1S/C26H19ClFN3O2S2/c27-19-4-1-2-5-21(19)35-24-20(32)14-26(31-25(24)33,16-12-13-34-15-16)22-6-3-7-23(30-22)29-18-10-8-17(28)9-11-18/h1-13,15,24H,14H2,(H,29,30)(H,31,33)/t24-,26-/m0/s1" D47 InChIKey InChI 1.03 QQAHTOHBFSHZCZ-AHWVRZQESA-N D47 SMILES_CANONICAL CACTVS 3.385 "Fc1ccc(Nc2cccc(n2)[C@]3(CC(=O)[C@H](Sc4ccccc4Cl)C(=O)N3)c5cscc5)cc1" D47 SMILES CACTVS 3.385 "Fc1ccc(Nc2cccc(n2)[C]3(CC(=O)[CH](Sc4ccccc4Cl)C(=O)N3)c5cscc5)cc1" D47 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "c1ccc(c(c1)S[C@H]2C(=O)C[C@](NC2=O)(c3ccsc3)c4cccc(n4)Nc5ccc(cc5)F)Cl" D47 SMILES "OpenEye OEToolkits" 2.0.6 "c1ccc(c(c1)SC2C(=O)CC(NC2=O)(c3ccsc3)c4cccc(n4)Nc5ccc(cc5)F)Cl" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier D47 "SYSTEMATIC NAME" ACDLabs 12.01 "(3S,6S)-3-[(2-chlorophenyl)sulfanyl]-6-{6-[(4-fluorophenyl)amino]pyridin-2-yl}-6-(thiophen-3-yl)piperidine-2,4-dione" D47 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(3~{S},6~{S})-3-(2-chlorophenyl)sulfanyl-6-[6-[(4-fluorophenyl)amino]pyridin-2-yl]-6-thiophen-3-yl-piperidine-2,4-dione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site D47 "Create component" 2017-10-17 RCSB D47 "Initial release" 2018-10-24 RCSB #