data_D5A # _chem_comp.id D5A _chem_comp.name ;trans-mi2-acetato-(O, O')-N-imidazyl-pentaaqua-dirhodium(II, II) ; _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C5 H11 N2 O7 Rh2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-12-14 _chem_comp.pdbx_modified_date 2022-08-22 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 416.961 _chem_comp.one_letter_code ? _chem_comp.three_letter_code D5A _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag Y _chem_comp.pdbx_model_coordinates_db_code 7QHR _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal D5A O9 O1 O 0 1 N N N 48.622 14.759 -8.904 ? ? ? O9 D5A 1 D5A RH3 RH1 RH 0 0 N N N 48.091 15.664 -7.162 ? ? ? RH3 D5A 2 D5A O12 O2 O 0 1 N N N 49.215 14.150 -6.212 ? ? ? O12 D5A 3 D5A O14 O3 O 0 1 N N N 46.927 17.128 -8.079 ? ? ? O14 D5A 4 D5A O15 O4 O 0 1 N N N 46.905 13.170 -8.481 ? ? ? O15 D5A 5 D5A RH4 RH2 RH 0 0 N N N 46.244 13.975 -6.708 ? ? ? RH4 D5A 6 D5A O13 O5 O 0 1 N N N 45.452 14.678 -5.150 ? ? ? O13 D5A 7 D5A O11 O6 O 0 1 N N N 47.678 12.721 -5.800 ? ? ? O11 D5A 8 D5A O10 O7 O 0 1 N N N 47.488 16.490 -5.349 ? ? ? O10 D5A 9 D5A C1 C1 C 0 1 N N N 48.853 13.065 -5.758 ? ? ? C1 D5A 10 D5A C2 C2 C 0 1 N N N 49.870 12.119 -5.095 ? ? ? C2 D5A 11 D5A N1 N1 N 0 1 Y N N 44.652 15.133 -7.103 ? ? ? N1 D5A 12 D5A N2 N2 N 0 1 Y N N 42.987 16.453 -7.364 ? ? ? N2 D5A 13 D5A C3 C3 C 0 1 Y N N 43.788 15.875 -6.446 ? ? ? C3 D5A 14 D5A C4 C4 C 0 1 Y N N 43.397 16.035 -8.572 ? ? ? C4 D5A 15 D5A C5 C5 C 0 1 Y N N 44.445 15.197 -8.420 ? ? ? C5 D5A 16 D5A H5 H7 H 0 1 N N N 50.869 12.579 -5.118 ? ? ? H5 D5A 17 D5A H6 H8 H 0 1 N N N 49.575 11.937 -4.051 ? ? ? H6 D5A 18 D5A H7 H9 H 0 1 N N N 49.893 11.165 -5.642 ? ? ? H7 D5A 19 D5A H8 H10 H 0 1 N N N 43.731 15.998 -5.375 ? ? ? H8 D5A 20 D5A H9 H11 H 0 1 N N N 42.958 16.323 -9.516 ? ? ? H9 D5A 21 D5A H10 H12 H 0 1 N N N 44.997 14.688 -9.197 ? ? ? H10 D5A 22 D5A H1 H1 H 0 1 N N N 46.131 14.968 -4.552 ? ? ? H1 D5A 23 D5A H2 H2 H 0 1 N N N 47.855 13.181 -8.500 ? ? ? H2 D5A 24 D5A H3 H3 H 0 1 N N N 48.244 15.233 -9.636 ? ? ? H3 D5A 25 D5A H11 H13 H 0 1 N N N 47.831 17.373 -5.273 ? ? ? H11 D5A 26 D5A H12 H14 H 0 1 N N N 46.556 17.699 -7.417 ? ? ? H12 D5A 27 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal D5A O9 RH3 SING N N 1 D5A RH3 O12 SING N N 2 D5A RH3 O14 SING N N 3 D5A RH3 O10 SING N N 4 D5A O12 C1 DOUB N N 5 D5A O15 RH4 SING N N 6 D5A RH4 O13 SING N N 7 D5A RH4 O11 SING N N 8 D5A RH4 N1 SING N N 9 D5A O11 C1 SING N N 10 D5A C1 C2 SING N N 11 D5A N1 C3 SING Y N 12 D5A N1 C5 SING Y N 13 D5A N2 C3 DOUB Y N 14 D5A N2 C4 SING Y N 15 D5A C4 C5 DOUB Y N 16 D5A C2 H5 SING N N 17 D5A C2 H6 SING N N 18 D5A C2 H7 SING N N 19 D5A C3 H8 SING N N 20 D5A C4 H9 SING N N 21 D5A C5 H10 SING N N 22 D5A RH3 RH4 SING N N 23 D5A H1 O13 SING N N 24 D5A H2 O15 SING N N 25 D5A H3 O9 SING N N 26 D5A H11 O10 SING N N 27 D5A H12 O14 SING N N 28 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor D5A InChI InChI 1.06 "InChI=1S/C3H3N2.C2H4O2.5H2O.2Rh/c1-2-5-3-4-1;1-2(3)4;;;;;;;/h1-3H;1H3,(H,3,4);5*1H2;;/q-1;;;;;;;+3;+4/p-6" D5A InChIKey InChI 1.06 BYUCGAKRVFARFM-UHFFFAOYSA-H D5A SMILES_CANONICAL CACTVS 3.385 "CC(=O)O[Rh](O)(O)n1ccnc1.O[Rh](O)O" D5A SMILES CACTVS 3.385 "CC(=O)O[Rh](O)(O)n1ccnc1.O[Rh](O)O" D5A SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC1=O[Rh]([Rh](O1)(n2ccnc2)(O)O)(O)(O)O" D5A SMILES "OpenEye OEToolkits" 2.0.7 "CC1=O[Rh]([Rh](O1)(n2ccnc2)(O)O)(O)(O)O" # _pdbx_chem_comp_identifier.comp_id D5A _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "1-[5-methyl-2,2,3,3,3-pentakis(oxidanyl)-1,4$l^{3}-dioxa-2$l^{5},3$l^{5}-dirhodacyclopent-4-en-2-yl]imidazole" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site D5A "Create component" 2021-12-14 PDBE D5A "Modify coordinates" 2022-03-29 PDBE D5A "Initial release" 2022-06-08 RCSB D5A "Modify descriptor" 2022-08-22 RCSB #