data_D5F # _chem_comp.id D5F _chem_comp.name "3-[[(1~{S},3~{S})-3-methylcyclohexyl]methyl]-6,8-bis(oxidanyl)isochromen-1-one" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C17 H20 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2019-07-03 _chem_comp.pdbx_modified_date 2020-04-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 288.338 _chem_comp.one_letter_code ? _chem_comp.three_letter_code D5F _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6KCN _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal D5F C11 C1 C 0 1 N N S 7.693 14.782 -3.699 -2.672 0.501 0.393 C11 D5F 1 D5F C12 C2 C 0 1 N N S 5.179 14.352 -3.765 -5.027 0.790 -0.390 C12 D5F 2 D5F C13 C3 C 0 1 N N N 4.951 15.073 -2.440 -5.115 -0.710 -0.678 C13 D5F 3 D5F C1 C4 C 0 1 Y N N 10.342 10.490 -7.675 3.374 -0.985 -0.298 C1 D5F 4 D5F C10 C5 C 0 1 N N N 8.269 15.109 -5.073 -1.702 0.741 1.552 C10 D5F 5 D5F C2 C6 C 0 1 Y N N 10.280 10.401 -9.062 4.372 -0.063 -0.562 C2 D5F 6 D5F C3 C7 C 0 1 Y N N 9.718 11.436 -9.800 4.130 1.301 -0.428 C3 D5F 7 D5F C4 C8 C 0 1 Y N N 9.216 12.560 -9.156 2.886 1.767 -0.030 C4 D5F 8 D5F C5 C9 C 0 1 Y N N 9.277 12.645 -7.771 1.871 0.859 0.238 C5 D5F 9 D5F C6 C10 C 0 1 N N N 8.780 13.763 -7.115 0.525 1.267 0.657 C6 D5F 10 D5F C7 C11 C 0 1 N N N 8.829 13.865 -5.727 -0.312 0.333 1.137 C7 D5F 11 D5F C8 C12 C 0 1 N N N 9.887 11.736 -5.554 1.000 -1.432 0.413 C8 D5F 12 D5F C9 C13 C 0 1 Y N N 9.837 11.613 -7.034 2.117 -0.532 0.107 C9 D5F 13 D5F C14 C14 C 0 1 N N N 6.218 15.738 -1.913 -3.729 -1.240 -1.054 C14 D5F 14 D5F C15 C15 C 0 1 N N N 7.184 16.063 -3.046 -2.760 -0.999 0.105 C15 D5F 15 D5F C16 C16 C 0 1 N N N 4.113 13.281 -3.964 -4.523 1.520 -1.636 C16 D5F 16 D5F C17 C17 C 0 1 N N N 6.577 13.741 -3.806 -4.057 1.030 0.769 C17 D5F 17 D5F O1 O1 O 0 1 N N N 10.889 9.480 -6.943 3.613 -2.313 -0.436 O1 D5F 18 D5F O2 O2 O 0 1 N N N 9.658 11.352 -11.158 5.125 2.187 -0.689 O2 D5F 19 D5F O3 O3 O 0 1 N N N 9.380 12.864 -4.961 0.053 -0.959 1.260 O3 D5F 20 D5F O4 O4 O 0 1 N N N 10.387 10.819 -4.864 0.930 -2.550 -0.062 O4 D5F 21 D5F H1 H1 H 0 1 N N N 8.497 14.367 -3.073 -2.313 1.021 -0.495 H1 D5F 22 D5F H2 H2 H 0 1 N N N 5.094 15.085 -4.581 -6.014 1.167 -0.122 H2 D5F 23 D5F H3 H3 H 0 1 N N N 4.182 15.845 -2.586 -5.474 -1.230 0.210 H3 D5F 24 D5F H4 H4 H 0 1 N N N 4.600 14.342 -1.696 -5.806 -0.881 -1.504 H4 D5F 25 D5F H5 H5 H 0 1 N N N 9.073 15.851 -4.960 -1.707 1.799 1.816 H5 D5F 26 D5F H6 H6 H 0 1 N N N 7.473 15.524 -5.709 -2.013 0.151 2.414 H6 D5F 27 D5F H7 H7 H 0 1 N N N 10.668 9.528 -9.565 5.348 -0.405 -0.874 H7 D5F 28 D5F H8 H8 H 0 1 N N N 8.780 13.364 -9.730 2.708 2.828 0.071 H8 D5F 29 D5F H9 H9 H 0 1 N N N 8.348 14.568 -7.691 0.213 2.298 0.582 H9 D5F 30 D5F H10 H10 H 0 1 N N N 6.712 15.057 -1.205 -3.792 -2.308 -1.260 H10 D5F 31 D5F H11 H11 H 0 1 N N N 5.945 16.670 -1.396 -3.370 -0.719 -1.942 H11 D5F 32 D5F H12 H12 H 0 1 N N N 8.038 16.628 -2.643 -1.773 -1.376 -0.163 H12 D5F 33 D5F H13 H13 H 0 1 N N N 6.665 16.672 -3.801 -3.119 -1.519 0.993 H13 D5F 34 D5F H14 H14 H 0 1 N N N 3.116 13.745 -3.931 -5.213 1.349 -2.462 H14 D5F 35 D5F H15 H15 H 0 1 N N N 4.259 12.796 -4.940 -4.460 2.589 -1.431 H15 D5F 36 D5F H16 H16 H 0 1 N N N 4.195 12.530 -3.165 -3.536 1.143 -1.904 H16 D5F 37 D5F H17 H17 H 0 1 N N N 6.675 13.036 -2.967 -4.416 0.510 1.657 H17 D5F 38 D5F H18 H18 H 0 1 N N N 6.694 13.199 -4.756 -3.994 2.099 0.974 H18 D5F 39 D5F H19 H19 H 0 1 N N N 10.849 9.700 -6.020 3.426 -2.657 -1.321 H19 D5F 40 D5F H20 H20 H 0 1 N N N 10.039 10.530 -11.442 5.669 2.406 0.080 H20 D5F 41 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal D5F O2 C3 SING N N 1 D5F C3 C4 DOUB Y N 2 D5F C3 C2 SING Y N 3 D5F C4 C5 SING Y N 4 D5F C2 C1 DOUB Y N 5 D5F C5 C6 SING N N 6 D5F C5 C9 DOUB Y N 7 D5F C1 C9 SING Y N 8 D5F C1 O1 SING N N 9 D5F C6 C7 DOUB N N 10 D5F C9 C8 SING N N 11 D5F C7 C10 SING N N 12 D5F C7 O3 SING N N 13 D5F C8 O3 SING N N 14 D5F C8 O4 DOUB N N 15 D5F C10 C11 SING N N 16 D5F C16 C12 SING N N 17 D5F C17 C12 SING N N 18 D5F C17 C11 SING N N 19 D5F C12 C13 SING N N 20 D5F C11 C15 SING N N 21 D5F C15 C14 SING N N 22 D5F C13 C14 SING N N 23 D5F C11 H1 SING N N 24 D5F C12 H2 SING N N 25 D5F C13 H3 SING N N 26 D5F C13 H4 SING N N 27 D5F C10 H5 SING N N 28 D5F C10 H6 SING N N 29 D5F C2 H7 SING N N 30 D5F C4 H8 SING N N 31 D5F C6 H9 SING N N 32 D5F C14 H10 SING N N 33 D5F C14 H11 SING N N 34 D5F C15 H12 SING N N 35 D5F C15 H13 SING N N 36 D5F C16 H14 SING N N 37 D5F C16 H15 SING N N 38 D5F C16 H16 SING N N 39 D5F C17 H17 SING N N 40 D5F C17 H18 SING N N 41 D5F O1 H19 SING N N 42 D5F O2 H20 SING N N 43 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor D5F InChI InChI 1.03 "InChI=1S/C17H20O4/c1-10-3-2-4-11(5-10)6-14-8-12-7-13(18)9-15(19)16(12)17(20)21-14/h7-11,18-19H,2-6H2,1H3/t10-,11-/m0/s1" D5F InChIKey InChI 1.03 JSPLICPLSKXJBM-QWRGUYRKSA-N D5F SMILES_CANONICAL CACTVS 3.385 "C[C@H]1CCC[C@@H](C1)CC2=Cc3cc(O)cc(O)c3C(=O)O2" D5F SMILES CACTVS 3.385 "C[CH]1CCC[CH](C1)CC2=Cc3cc(O)cc(O)c3C(=O)O2" D5F SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H]1CCC[C@@H](C1)CC2=Cc3cc(cc(c3C(=O)O2)O)O" D5F SMILES "OpenEye OEToolkits" 2.0.7 "CC1CCCC(C1)CC2=Cc3cc(cc(c3C(=O)O2)O)O" # _pdbx_chem_comp_identifier.comp_id D5F _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "3-[[(1~{S},3~{S})-3-methylcyclohexyl]methyl]-6,8-bis(oxidanyl)isochromen-1-one" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site D5F "Create component" 2019-07-03 PDBJ D5F "Initial release" 2020-04-08 RCSB ##