data_D5P # _chem_comp.id D5P _chem_comp.name "5-(2-amino-1-ethyl)thio-3-cyclobutyl-7-[4-(pyrazol-1-yl)benzyl]amino-1(2)H-pyrazolo[4,3-d]pyrimidine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H24 N8 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "5-(2-azanylethylsulfanyl)-3-cyclobutyl-N-[(4-pyrazol-1-ylphenyl)methyl]-1H-pyrazolo[4,3-d]pyrimidin-7-amine" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-12-14 _chem_comp.pdbx_modified_date 2022-08-22 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 420.534 _chem_comp.one_letter_code ? _chem_comp.three_letter_code D5P _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7QHL _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal D5P N1 N1 N 0 1 N N N 23.432 -19.916 37.049 -0.999 -6.234 -0.047 N1 D5P 1 D5P N3 N2 N 0 1 N N N 21.887 -14.139 38.587 0.272 0.190 0.016 N3 D5P 2 D5P C4 C1 C 0 1 Y N N 22.377 -14.477 37.382 -1.098 -0.002 0.025 C4 D5P 3 D5P C5 C2 C 0 1 N N N 21.926 -15.010 39.746 1.173 -0.965 0.002 C5 D5P 4 D5P C6 C3 C 0 1 Y N N 23.181 -14.791 40.537 2.602 -0.487 -0.006 C6 D5P 5 D5P C7 C4 C 0 1 Y N N 24.030 -15.840 40.834 3.266 -0.276 1.189 C7 D5P 6 D5P C8 C5 C 0 1 Y N N 25.188 -15.641 41.562 4.576 0.162 1.185 C8 D5P 7 D5P C10 C6 C 0 1 Y N N 26.966 -13.086 43.568 7.302 1.096 -1.125 C10 D5P 8 D5P C13 C7 C 0 1 Y N N 24.614 -13.326 41.794 4.558 0.177 -1.218 C13 D5P 9 D5P C15 C8 C 0 1 Y N N 22.006 -13.774 36.219 -1.974 1.094 0.039 C15 D5P 10 D5P C17 C9 C 0 1 N N N 22.097 -13.359 32.534 -5.488 2.329 0.072 C17 D5P 11 D5P C20 C10 C 0 1 N N N 21.508 -14.593 31.744 -5.995 3.159 -1.119 C20 D5P 12 D5P C21 C11 C 0 1 Y N N 22.510 -14.179 34.978 -3.357 0.847 0.047 C21 D5P 13 D5P C1 C12 C 0 1 N N N 23.582 -18.676 37.842 -2.266 -5.491 -0.028 C1 D5P 14 D5P C2 C13 C 0 1 N N N 24.837 -17.879 37.578 -1.977 -3.989 -0.013 C2 D5P 15 D5P S1 S1 S 0 1 N N N 24.798 -17.135 35.902 -3.539 -3.074 0.010 S1 D5P 16 D5P C3 C14 C 0 1 Y N N 23.652 -15.829 36.025 -2.925 -1.422 0.024 C3 D5P 17 D5P N2 N3 N 0 1 Y N N 23.254 -15.486 37.279 -1.611 -1.227 0.015 N2 D5P 18 D5P C9 C15 C 0 1 Y N N 25.453 -14.381 42.066 5.226 0.391 -0.020 C9 D5P 19 D5P N4 N4 N 0 1 Y N N 26.640 -14.153 42.808 6.555 0.836 -0.027 N4 D5P 20 D5P C11 C16 C 0 1 Y N N 28.240 -13.295 44.036 8.523 1.501 -0.706 C11 D5P 21 D5P C12 C17 C 0 1 Y N N 28.639 -14.496 43.478 8.522 1.495 0.694 C12 D5P 22 D5P N5 N5 N 0 1 Y N N 27.675 -15.028 42.709 7.345 1.091 1.101 N5 D5P 23 D5P C14 C18 C 0 1 Y N N 23.480 -13.534 41.031 3.250 -0.266 -1.208 C14 D5P 24 D5P N6 N6 N 0 1 Y N N 21.241 -12.703 35.960 -1.815 2.455 0.047 N6 D5P 25 D5P N7 N7 N 0 1 Y N N 21.182 -12.474 34.619 -3.089 3.038 0.060 N7 D5P 26 D5P C16 C19 C 0 1 Y N N 21.967 -13.355 34.012 -3.998 2.104 0.060 C16 D5P 27 D5P C18 C20 C 0 1 N N N 23.466 -13.693 31.957 -5.928 3.496 0.973 C18 D5P 28 D5P C19 C21 C 0 1 N N N 22.799 -14.675 30.953 -6.939 3.860 -0.129 C19 D5P 29 D5P N8 N8 N 0 1 Y N N 23.349 -15.231 34.859 -3.788 -0.423 0.041 N8 D5P 30 D5P H1 H1 H 0 1 N N N 22.575 -20.368 37.296 -0.415 -5.971 0.733 H1 D5P 31 D5P H2 H2 H 0 1 N N N 23.421 -19.689 36.075 -1.163 -7.229 -0.057 H2 D5P 32 D5P H4 H4 H 0 1 N N N 22.373 -13.307 38.855 0.636 1.089 0.019 H4 D5P 33 D5P H5 H5 H 0 1 N N N 21.056 -14.799 40.385 0.998 -1.574 0.889 H5 D5P 34 D5P H6 H6 H 0 1 N N N 21.889 -16.057 39.411 0.985 -1.562 -0.891 H6 D5P 35 D5P H7 H7 H 0 1 N N N 23.784 -16.834 40.491 2.759 -0.454 2.126 H7 D5P 36 D5P H8 H8 H 0 1 N N N 25.875 -16.457 41.734 5.093 0.328 2.118 H8 D5P 37 D5P H9 H9 H 0 1 N N N 26.342 -12.228 43.770 6.982 0.993 -2.151 H9 D5P 38 D5P H10 H10 H 0 1 N N N 24.840 -12.341 42.174 5.061 0.354 -2.157 H10 D5P 39 D5P H11 H11 H 0 1 N N N 21.714 -12.423 32.101 -6.054 1.413 0.238 H11 D5P 40 D5P H12 H12 H 0 1 N N N 20.620 -14.360 31.138 -5.240 3.820 -1.544 H12 D5P 41 D5P H13 H13 H 0 1 N N N 21.304 -15.475 32.369 -6.513 2.567 -1.874 H13 D5P 42 D5P H14 H14 H 0 1 N N N 22.719 -18.029 37.625 -2.847 -5.740 -0.916 H14 D5P 43 D5P H15 H15 H 0 1 N N N 23.575 -18.952 38.907 -2.833 -5.761 0.863 H15 D5P 44 D5P H16 H16 H 0 1 N N N 25.710 -18.544 37.657 -1.397 -3.739 0.875 H16 D5P 45 D5P H17 H17 H 0 1 N N N 24.919 -17.077 38.326 -1.411 -3.719 -0.905 H17 D5P 46 D5P H18 H18 H 0 1 N N N 28.808 -12.658 44.698 9.352 1.780 -1.339 H18 D5P 47 D5P H19 H19 H 0 1 N N N 29.606 -14.950 43.640 9.352 1.769 1.328 H19 D5P 48 D5P H20 H20 H 0 1 N N N 22.820 -12.706 40.818 2.730 -0.436 -2.139 H20 D5P 49 D5P H21 H21 H 0 1 N N N 20.779 -12.151 36.654 -0.970 2.930 0.044 H21 D5P 50 D5P H22 H22 H 0 1 N N N 24.149 -14.176 32.671 -6.392 3.176 1.906 H22 D5P 51 D5P H23 H23 H 0 1 N N N 23.974 -12.841 31.482 -5.153 4.248 1.122 H23 D5P 52 D5P H24 H24 H 0 1 N N N 23.253 -15.677 30.934 -7.033 4.932 -0.299 H24 D5P 53 D5P H25 H25 H 0 1 N N N 22.724 -14.287 29.926 -7.903 3.362 -0.017 H25 D5P 54 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal D5P C19 C20 SING N N 1 D5P C19 C18 SING N N 2 D5P C20 C17 SING N N 3 D5P C18 C17 SING N N 4 D5P C17 C16 SING N N 5 D5P C16 N7 DOUB Y N 6 D5P C16 C21 SING Y N 7 D5P N7 N6 SING Y N 8 D5P N8 C21 DOUB Y N 9 D5P N8 C3 SING Y N 10 D5P C21 C15 SING Y N 11 D5P S1 C3 SING N N 12 D5P S1 C2 SING N N 13 D5P N6 C15 SING Y N 14 D5P C3 N2 DOUB Y N 15 D5P C15 C4 DOUB Y N 16 D5P N1 C1 SING N N 17 D5P N2 C4 SING Y N 18 D5P C4 N3 SING N N 19 D5P C2 C1 SING N N 20 D5P N3 C5 SING N N 21 D5P C5 C6 SING N N 22 D5P C6 C7 DOUB Y N 23 D5P C6 C14 SING Y N 24 D5P C7 C8 SING Y N 25 D5P C14 C13 DOUB Y N 26 D5P C8 C9 DOUB Y N 27 D5P C13 C9 SING Y N 28 D5P C9 N4 SING N N 29 D5P N5 N4 SING Y N 30 D5P N5 C12 DOUB Y N 31 D5P N4 C10 SING Y N 32 D5P C12 C11 SING Y N 33 D5P C10 C11 DOUB Y N 34 D5P N1 H1 SING N N 35 D5P N1 H2 SING N N 36 D5P N3 H4 SING N N 37 D5P C5 H5 SING N N 38 D5P C5 H6 SING N N 39 D5P C7 H7 SING N N 40 D5P C8 H8 SING N N 41 D5P C10 H9 SING N N 42 D5P C13 H10 SING N N 43 D5P C17 H11 SING N N 44 D5P C20 H12 SING N N 45 D5P C20 H13 SING N N 46 D5P C1 H14 SING N N 47 D5P C1 H15 SING N N 48 D5P C2 H16 SING N N 49 D5P C2 H17 SING N N 50 D5P C11 H18 SING N N 51 D5P C12 H19 SING N N 52 D5P C14 H20 SING N N 53 D5P N6 H21 SING N N 54 D5P C18 H22 SING N N 55 D5P C18 H23 SING N N 56 D5P C19 H24 SING N N 57 D5P C19 H25 SING N N 58 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor D5P InChI InChI 1.06 "InChI=1S/C21H24N8S/c22-9-12-30-21-25-18-17(15-3-1-4-15)27-28-19(18)20(26-21)23-13-14-5-7-16(8-6-14)29-11-2-10-24-29/h2,5-8,10-11,15H,1,3-4,9,12-13,22H2,(H,27,28)(H,23,25,26)" D5P InChIKey InChI 1.06 MJACTWDJXKRKAV-UHFFFAOYSA-N D5P SMILES_CANONICAL CACTVS 3.385 "NCCSc1nc(NCc2ccc(cc2)n3cccn3)c4[nH]nc(C5CCC5)c4n1" D5P SMILES CACTVS 3.385 "NCCSc1nc(NCc2ccc(cc2)n3cccn3)c4[nH]nc(C5CCC5)c4n1" D5P SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cnn(c1)c2ccc(cc2)CNc3c4c(c(n[nH]4)C5CCC5)nc(n3)SCCN" D5P SMILES "OpenEye OEToolkits" 2.0.7 "c1cnn(c1)c2ccc(cc2)CNc3c4c(c(n[nH]4)C5CCC5)nc(n3)SCCN" # _pdbx_chem_comp_identifier.comp_id D5P _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "5-(2-azanylethylsulfanyl)-3-cyclobutyl-~{N}-[(4-pyrazol-1-ylphenyl)methyl]-1~{H}-pyrazolo[4,3-d]pyrimidin-7-amine" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id D5P _pdbx_chem_comp_synonyms.name "5-(2-azanylethylsulfanyl)-3-cyclobutyl-N-[(4-pyrazol-1-ylphenyl)methyl]-1H-pyrazolo[4,3-d]pyrimidin-7-amine" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site D5P "Create component" 2021-12-14 PDBE D5P "Modify synonyms" 2022-02-16 PDBE D5P "Initial release" 2022-07-06 RCSB D5P "Modify descriptor" 2022-08-22 RCSB #