data_D5Y # _chem_comp.id D5Y _chem_comp.name "methyl 3-(5-bromo-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-L-alaninate" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C8 H10 Br N3 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2017-10-20 _chem_comp.pdbx_modified_date 2020-04-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 292.087 _chem_comp.one_letter_code ? _chem_comp.three_letter_code D5Y _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5QB6 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal D5Y O3 O1 O 0 1 N N N -3.601 3.122 5.359 0.937 -2.647 0.522 O3 D5Y 1 D5Y C4 C1 C 0 1 N N N -3.205 1.581 8.507 -0.650 0.426 0.379 C4 D5Y 2 D5Y C5 C2 C 0 1 N N N -2.960 2.631 9.302 -1.915 0.038 0.109 C5 D5Y 3 D5Y C6 C3 C 0 1 N N N -2.940 3.974 8.771 -2.199 -1.344 -0.021 C6 D5Y 4 D5Y N1 N1 N 0 1 N N N -3.185 4.021 7.410 -1.203 -2.240 0.127 N1 D5Y 5 D5Y C7 C4 C 0 1 N N N -3.425 2.964 6.560 0.049 -1.826 0.396 C7 D5Y 6 D5Y N2 N2 N 0 1 N N N -5.962 1.113 5.632 2.369 -1.094 -1.339 N2 D5Y 7 D5Y BR BR1 BR 0 0 N N N -2.606 2.394 11.141 -3.289 1.322 -0.091 BR D5Y 8 D5Y O2 O2 O 0 1 N N N -2.731 5.007 9.408 -3.332 -1.718 -0.263 O2 D5Y 9 D5Y N N3 N 0 1 N N N -3.427 1.725 7.158 0.333 -0.517 0.517 N D5Y 10 D5Y C3 C5 C 0 1 N N N -3.606 0.561 6.284 1.708 -0.096 0.797 C3 D5Y 11 D5Y C2 C6 C 0 1 N N S -5.080 0.051 6.189 2.454 0.123 -0.521 C2 D5Y 12 D5Y C1 C7 C 0 1 N N N -5.623 -0.349 7.547 3.899 0.436 -0.234 C1 D5Y 13 D5Y O1 O3 O 0 1 N N N -6.680 0.008 7.982 4.737 -0.429 -0.337 O1 D5Y 14 D5Y O O4 O 0 1 N N N -4.760 -1.129 8.191 4.257 1.676 0.135 O D5Y 15 D5Y C C8 C 0 1 N N N -5.125 -1.494 9.543 5.667 1.905 0.395 C D5Y 16 D5Y H1 H1 H 0 1 N N N -3.229 0.591 8.939 -0.414 1.475 0.481 H1 D5Y 17 D5Y H2 H2 H 0 1 N N N -3.188 4.930 6.994 -1.390 -3.188 0.040 H2 D5Y 18 D5Y H3 H3 H 0 1 N N N -6.901 0.773 5.577 2.798 -0.954 -2.241 H3 D5Y 19 D5Y H4 H4 H 0 1 N N N -5.933 1.916 6.227 2.782 -1.881 -0.860 H4 D5Y 20 D5Y H6 H6 H 0 1 N N N -2.982 -0.259 6.669 1.695 0.834 1.366 H6 D5Y 21 D5Y H7 H7 H 0 1 N N N -3.270 0.834 5.273 2.214 -0.868 1.377 H7 D5Y 22 D5Y H8 H8 H 0 1 N N N -5.101 -0.825 5.524 2.001 0.955 -1.060 H8 D5Y 23 D5Y H9 H9 H 0 1 N N N -4.343 -2.136 9.974 5.999 1.252 1.202 H9 D5Y 24 D5Y H10 H10 H 0 1 N N N -5.230 -0.584 10.153 6.242 1.691 -0.506 H10 D5Y 25 D5Y H11 H11 H 0 1 N N N -6.080 -2.039 9.530 5.819 2.945 0.683 H11 D5Y 26 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal D5Y O3 C7 DOUB N N 1 D5Y N2 C2 SING N N 2 D5Y C2 C3 SING N N 3 D5Y C2 C1 SING N N 4 D5Y C3 N SING N N 5 D5Y C7 N SING N N 6 D5Y C7 N1 SING N N 7 D5Y N C4 SING N N 8 D5Y N1 C6 SING N N 9 D5Y C1 O1 DOUB N N 10 D5Y C1 O SING N N 11 D5Y O C SING N N 12 D5Y C4 C5 DOUB N N 13 D5Y C6 C5 SING N N 14 D5Y C6 O2 DOUB N N 15 D5Y C5 BR SING N N 16 D5Y C4 H1 SING N N 17 D5Y N1 H2 SING N N 18 D5Y N2 H3 SING N N 19 D5Y N2 H4 SING N N 20 D5Y C3 H6 SING N N 21 D5Y C3 H7 SING N N 22 D5Y C2 H8 SING N N 23 D5Y C H9 SING N N 24 D5Y C H10 SING N N 25 D5Y C H11 SING N N 26 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor D5Y SMILES ACDLabs 12.01 "O=C1NC(C(=CN1CC(N)C(=O)OC)Br)=O" D5Y InChI InChI 1.03 "InChI=1S/C8H10BrN3O4/c1-16-7(14)5(10)3-12-2-4(9)6(13)11-8(12)15/h2,5H,3,10H2,1H3,(H,11,13,15)/t5-/m0/s1" D5Y InChIKey InChI 1.03 SWCNOWRHWSFLMA-YFKPBYRVSA-N D5Y SMILES_CANONICAL CACTVS 3.385 "COC(=O)[C@@H](N)CN1C=C(Br)C(=O)NC1=O" D5Y SMILES CACTVS 3.385 "COC(=O)[CH](N)CN1C=C(Br)C(=O)NC1=O" D5Y SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "COC(=O)[C@H](CN1C=C(C(=O)NC1=O)Br)N" D5Y SMILES "OpenEye OEToolkits" 2.0.6 "COC(=O)C(CN1C=C(C(=O)NC1=O)Br)N" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier D5Y "SYSTEMATIC NAME" ACDLabs 12.01 "methyl 3-(5-bromo-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-L-alaninate" D5Y "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "methyl (2~{S})-2-azanyl-3-[5-bromanyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]propanoate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site D5Y "Create component" 2017-10-20 RCSB D5Y "Initial release" 2020-04-22 RCSB ##