data_D61 # _chem_comp.id D61 _chem_comp.name "(2R,3R)-2-(carboxymethoxy)-4-{[5-(naphthalen-2-yl)pentyl]amino}-3-{[5-(naphthalen-2-yl)pentyl]oxy}-4-oxobutanoic acid" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C36 H41 N O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2011-01-12 _chem_comp.pdbx_modified_date 2011-12-16 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 599.713 _chem_comp.one_letter_code ? _chem_comp.three_letter_code D61 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3Q30 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal D61 C1 C1 C 0 1 Y N N 22.787 1.700 53.304 -13.333 -0.178 -0.632 C1 D61 1 D61 C2 C2 C 0 1 Y N N 21.563 1.824 54.004 -12.905 0.378 0.572 C2 D61 2 D61 C3 C3 C 0 1 Y N N 20.727 0.716 54.234 -11.681 0.078 1.087 C3 D61 3 D61 C4 C4 C 0 1 Y N N 21.116 -0.566 53.766 -10.834 -0.806 0.396 C4 D61 4 D61 C5 C5 C 0 1 Y N N 22.357 -0.690 53.055 -11.270 -1.372 -0.828 C5 D61 5 D61 C6 C6 C 0 1 Y N N 23.187 0.452 52.838 -12.540 -1.038 -1.328 C6 D61 6 D61 C7 C7 C 0 1 Y N N 22.765 -1.954 52.560 -10.423 -2.255 -1.519 C7 D61 7 D61 C8 C8 C 0 1 Y N N 21.973 -3.081 52.766 -9.199 -2.555 -1.004 C8 D61 8 D61 C9 C9 C 0 1 Y N N 20.751 -2.976 53.449 -8.771 -1.999 0.200 C9 D61 9 D61 C10 C10 C 0 1 Y N N 20.307 -1.723 53.959 -9.564 -1.140 0.896 C10 D61 10 D61 C11 C11 C 0 1 N N N 19.954 -4.265 53.654 -7.409 -2.355 0.739 C11 D61 11 D61 C12 C12 C 0 1 N N N 20.580 -5.050 54.833 -6.374 -1.364 0.204 C12 D61 12 D61 C13 C13 C 0 1 N N N 19.666 -6.226 55.239 -4.992 -1.725 0.751 C13 D61 13 D61 C14 C14 C 0 1 N N N 19.553 -6.383 56.780 -3.956 -0.734 0.216 C14 D61 14 D61 C15 C15 C 0 1 N N N 18.465 -7.402 57.193 -2.574 -1.095 0.763 C15 D61 15 D61 N16 N16 N 0 1 N N N 18.521 -8.593 56.304 -1.583 -0.146 0.250 N16 D61 16 D61 C17 C17 C 0 1 N N N 17.476 -8.940 55.532 -0.287 -0.269 0.602 C17 D61 17 D61 O18 O18 O 0 1 N N N 16.450 -8.265 55.432 0.044 -1.107 1.413 O18 D61 18 D61 C19 C19 C 0 1 N N R 17.532 -10.265 54.776 0.749 0.636 -0.013 C19 D61 19 D61 O20 O20 O 0 1 N N N 16.757 -10.142 53.548 2.053 0.197 0.373 O20 D61 20 D61 C21 C21 C 0 1 N N N 17.419 -10.109 52.272 3.085 0.561 -0.547 C21 D61 21 D61 C22 C22 C 0 1 N N N 16.535 -9.601 51.128 4.409 -0.062 -0.101 C22 D61 22 D61 C23 C23 C 0 1 N N N 15.446 -8.549 51.496 5.513 0.327 -1.086 C23 D61 23 D61 C24 C24 C 0 1 N N N 16.027 -7.120 51.634 6.838 -0.296 -0.639 C24 D61 24 D61 C25 C25 C 0 1 N N N 14.966 -6.118 52.049 7.942 0.093 -1.624 C25 D61 25 D61 C26 C26 C 0 1 Y N N 15.418 -4.690 52.398 9.246 -0.521 -1.185 C26 D61 26 D61 C27 C27 C 0 1 Y N N 15.960 -4.387 53.656 9.598 -1.788 -1.646 C27 D61 27 D61 C28 C28 C 0 1 Y N N 16.337 -3.081 53.972 10.769 -2.370 -1.268 C28 D61 28 D61 C29 C29 C 0 1 Y N N 16.139 -2.071 53.022 11.638 -1.687 -0.401 C29 D61 29 D61 C30 C30 C 0 1 Y N N 15.586 -2.383 51.730 11.280 -0.398 0.068 C30 D61 30 D61 C31 C31 C 0 1 Y N N 15.234 -3.685 51.434 10.065 0.173 -0.347 C31 D61 31 D61 C32 C32 C 0 1 Y N N 15.401 -1.377 50.780 12.149 0.285 0.936 C32 D61 32 D61 C33 C33 C 0 1 Y N N 15.753 -0.067 51.088 13.319 -0.298 1.314 C33 D61 33 D61 C34 C34 C 0 1 Y N N 16.281 0.230 52.343 13.671 -1.565 0.853 C34 D61 34 D61 C35 C35 C 0 1 Y N N 16.480 -0.752 53.302 12.855 -2.257 0.011 C35 D61 35 D61 C36 C36 C 0 1 N N R 16.847 -11.362 55.627 0.529 2.069 0.474 C36 D61 36 D61 O37 O37 O 0 1 N N N 15.456 -10.941 55.873 -0.785 2.499 0.110 O37 D61 37 D61 C38 C38 C 0 1 N N N 14.965 -10.633 57.228 -0.873 3.045 -1.208 C38 D61 38 D61 C39 C39 C 0 1 N N N 13.443 -10.789 57.387 -2.264 3.575 -1.439 C39 D61 39 D61 O40 O40 O 0 1 N N N 12.888 -10.172 58.343 -3.095 3.494 -0.566 O40 D61 40 D61 O41 O41 O 0 1 N N N 12.820 -11.514 56.545 -2.581 4.138 -2.616 O41 D61 41 D61 C42 C42 C 0 1 N N N 16.970 -12.691 54.851 0.676 2.119 1.973 C42 D61 42 D61 O43 O43 O 0 1 N N N 15.928 -13.296 54.477 -0.282 2.368 2.666 O43 D61 43 D61 O44 O44 O 0 1 N N N 18.140 -13.095 54.588 1.871 1.886 2.538 O44 D61 44 D61 H1 H1 H 0 1 N N N 23.406 2.568 53.133 -14.310 0.074 -1.016 H1 D61 45 D61 H2 H2 H 0 1 N N N 21.263 2.794 54.371 -13.554 1.058 1.105 H2 D61 46 D61 H3 H3 H 0 1 N N N 19.794 0.840 54.764 -11.362 0.517 2.021 H3 D61 47 D61 H6 H6 H 0 1 N N N 24.125 0.347 52.312 -12.885 -1.461 -2.260 H6 D61 48 D61 H7 H7 H 0 1 N N N 23.696 -2.044 52.020 -10.742 -2.694 -2.453 H7 D61 49 D61 H8 H8 H 0 1 N N N 22.301 -4.042 52.398 -8.550 -3.234 -1.537 H8 D61 50 D61 H10 H10 H 0 1 N N N 19.367 -1.650 54.486 -9.219 -0.717 1.828 H10 D61 51 D61 H11 H11 H 0 1 N N N 18.906 -4.022 53.884 -7.426 -2.310 1.828 H11 D61 52 D61 H11A H11A H 0 0 N N N 19.991 -4.875 52.739 -7.145 -3.364 0.421 H11A D61 53 D61 H12 H12 H 0 1 N N N 21.560 -5.443 54.526 -6.357 -1.409 -0.885 H12 D61 54 D61 H12A H12A H 0 0 N N N 20.703 -4.374 55.692 -6.639 -0.355 0.521 H12A D61 55 D61 H13 H13 H 0 1 N N N 18.661 -6.043 54.832 -5.009 -1.680 1.840 H13 D61 56 D61 H13A H13A H 0 0 N N N 20.086 -7.154 54.823 -4.727 -2.734 0.433 H13A D61 57 D61 H14 H14 H 0 1 N N N 20.522 -6.732 57.167 -3.939 -0.779 -0.873 H14 D61 58 D61 H14A H14A H 0 0 N N N 19.296 -5.405 57.212 -4.221 0.275 0.534 H14A D61 59 D61 H15 H15 H 0 1 N N N 18.637 -7.716 58.233 -2.591 -1.050 1.852 H15 D61 60 D61 H15A H15A H 0 0 N N N 17.475 -6.931 57.108 -2.310 -2.103 0.445 H15A D61 61 D61 HN16 HN16 H 0 0 N N N 19.353 -9.147 56.280 -1.859 0.571 -0.342 HN16 D61 62 D61 H19 H19 H 0 1 N N N 18.582 -10.518 54.566 0.662 0.603 -1.099 H19 D61 63 D61 H21 H21 H 0 1 N N N 18.287 -9.438 52.356 2.829 0.197 -1.542 H21 D61 64 D61 H21A H21A H 0 0 N N N 17.738 -11.133 52.027 3.184 1.646 -0.571 H21A D61 65 D61 H22 H22 H 0 1 N N N 17.201 -9.132 50.388 4.665 0.301 0.894 H22 D61 66 D61 H22A H22A H 0 0 N N N 16.013 -10.474 50.710 4.310 -1.148 -0.076 H22A D61 67 D61 H23 H23 H 0 1 N N N 14.686 -8.541 50.701 5.258 -0.037 -2.081 H23 D61 68 D61 H23A H23A H 0 0 N N N 14.994 -8.836 52.457 5.613 1.412 -1.110 H23A D61 69 D61 H24 H24 H 0 1 N N N 16.818 -7.133 52.398 7.093 0.068 0.356 H24 D61 70 D61 H24A H24A H 0 0 N N N 16.442 -6.813 50.663 6.739 -1.382 -0.615 H24A D61 71 D61 H25 H25 H 0 1 N N N 14.266 -6.031 51.205 7.686 -0.271 -2.619 H25 D61 72 D61 H25A H25A H 0 0 N N N 14.481 -6.525 52.948 8.041 1.178 -1.648 H25A D61 73 D61 H27 H27 H 0 1 N N N 16.087 -5.172 54.387 8.932 -2.315 -2.313 H27 D61 74 D61 H28 H28 H 0 1 N N N 16.774 -2.853 54.933 11.029 -3.353 -1.633 H28 D61 75 D61 H31 H31 H 0 1 N N N 14.820 -3.929 50.467 9.781 1.156 -0.001 H31 D61 76 D61 H32 H32 H 0 1 N N N 14.987 -1.615 49.811 11.889 1.268 1.301 H32 D61 77 D61 H33 H33 H 0 1 N N N 15.618 0.717 50.357 13.985 0.229 1.981 H33 D61 78 D61 H34 H34 H 0 1 N N N 16.542 1.252 52.575 14.606 -2.005 1.168 H34 D61 79 D61 H35 H35 H 0 1 N N N 16.899 -0.493 54.263 13.141 -3.238 -0.338 H35 D61 80 D61 H36 H36 H 0 1 N N N 17.316 -11.510 56.611 1.267 2.727 0.014 H36 D61 81 D61 H38 H38 H 0 1 N N N 15.454 -11.322 57.933 -0.153 3.856 -1.314 H38 D61 82 D61 H38A H38A H 0 0 N N N 15.226 -9.589 57.456 -0.654 2.267 -1.939 H38A D61 83 D61 H41 H41 H 0 1 N N N 11.893 -11.513 56.751 -3.486 4.463 -2.718 H41 D61 84 D61 H44 H44 H 0 1 N N N 18.092 -13.898 54.082 1.916 1.929 3.503 H44 D61 85 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal D61 C1 C2 DOUB Y N 1 D61 C1 C6 SING Y N 2 D61 C2 C3 SING Y N 3 D61 C3 C4 DOUB Y N 4 D61 C4 C5 SING Y N 5 D61 C4 C10 SING Y N 6 D61 C5 C6 DOUB Y N 7 D61 C5 C7 SING Y N 8 D61 C7 C8 DOUB Y N 9 D61 C8 C9 SING Y N 10 D61 C9 C10 DOUB Y N 11 D61 C9 C11 SING N N 12 D61 C11 C12 SING N N 13 D61 C12 C13 SING N N 14 D61 C13 C14 SING N N 15 D61 C14 C15 SING N N 16 D61 C15 N16 SING N N 17 D61 N16 C17 SING N N 18 D61 C17 O18 DOUB N N 19 D61 C17 C19 SING N N 20 D61 C19 O20 SING N N 21 D61 C19 C36 SING N N 22 D61 O20 C21 SING N N 23 D61 C21 C22 SING N N 24 D61 C22 C23 SING N N 25 D61 C23 C24 SING N N 26 D61 C24 C25 SING N N 27 D61 C25 C26 SING N N 28 D61 C26 C27 DOUB Y N 29 D61 C26 C31 SING Y N 30 D61 C27 C28 SING Y N 31 D61 C28 C29 DOUB Y N 32 D61 C29 C30 SING Y N 33 D61 C29 C35 SING Y N 34 D61 C30 C31 DOUB Y N 35 D61 C30 C32 SING Y N 36 D61 C32 C33 DOUB Y N 37 D61 C33 C34 SING Y N 38 D61 C34 C35 DOUB Y N 39 D61 C36 O37 SING N N 40 D61 C36 C42 SING N N 41 D61 O37 C38 SING N N 42 D61 C38 C39 SING N N 43 D61 C39 O40 DOUB N N 44 D61 C39 O41 SING N N 45 D61 C42 O43 DOUB N N 46 D61 C42 O44 SING N N 47 D61 C1 H1 SING N N 48 D61 C2 H2 SING N N 49 D61 C3 H3 SING N N 50 D61 C6 H6 SING N N 51 D61 C7 H7 SING N N 52 D61 C8 H8 SING N N 53 D61 C10 H10 SING N N 54 D61 C11 H11 SING N N 55 D61 C11 H11A SING N N 56 D61 C12 H12 SING N N 57 D61 C12 H12A SING N N 58 D61 C13 H13 SING N N 59 D61 C13 H13A SING N N 60 D61 C14 H14 SING N N 61 D61 C14 H14A SING N N 62 D61 C15 H15 SING N N 63 D61 C15 H15A SING N N 64 D61 N16 HN16 SING N N 65 D61 C19 H19 SING N N 66 D61 C21 H21 SING N N 67 D61 C21 H21A SING N N 68 D61 C22 H22 SING N N 69 D61 C22 H22A SING N N 70 D61 C23 H23 SING N N 71 D61 C23 H23A SING N N 72 D61 C24 H24 SING N N 73 D61 C24 H24A SING N N 74 D61 C25 H25 SING N N 75 D61 C25 H25A SING N N 76 D61 C27 H27 SING N N 77 D61 C28 H28 SING N N 78 D61 C31 H31 SING N N 79 D61 C32 H32 SING N N 80 D61 C33 H33 SING N N 81 D61 C34 H34 SING N N 82 D61 C35 H35 SING N N 83 D61 C36 H36 SING N N 84 D61 C38 H38 SING N N 85 D61 C38 H38A SING N N 86 D61 O41 H41 SING N N 87 D61 O44 H44 SING N N 88 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor D61 SMILES ACDLabs 12.01 "O=C(O)C(OCC(=O)O)C(OCCCCCc2ccc1c(cccc1)c2)C(=O)NCCCCCc4cc3ccccc3cc4" D61 SMILES_CANONICAL CACTVS 3.370 "OC(=O)CO[C@H]([C@@H](OCCCCCc1ccc2ccccc2c1)C(=O)NCCCCCc3ccc4ccccc4c3)C(O)=O" D61 SMILES CACTVS 3.370 "OC(=O)CO[CH]([CH](OCCCCCc1ccc2ccccc2c1)C(=O)NCCCCCc3ccc4ccccc4c3)C(O)=O" D61 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "c1ccc2cc(ccc2c1)CCCCCNC(=O)[C@@H]([C@H](C(=O)O)OCC(=O)O)OCCCCCc3ccc4ccccc4c3" D61 SMILES "OpenEye OEToolkits" 1.7.0 "c1ccc2cc(ccc2c1)CCCCCNC(=O)C(C(C(=O)O)OCC(=O)O)OCCCCCc3ccc4ccccc4c3" D61 InChI InChI 1.03 "InChI=1S/C36H41NO7/c38-32(39)25-44-34(36(41)42)33(43-22-10-2-4-12-27-18-20-29-14-6-8-16-31(29)24-27)35(40)37-21-9-1-3-11-26-17-19-28-13-5-7-15-30(28)23-26/h5-8,13-20,23-24,33-34H,1-4,9-12,21-22,25H2,(H,37,40)(H,38,39)(H,41,42)/t33-,34-/m1/s1" D61 InChIKey InChI 1.03 MMKNOJATXTZICP-KKLWWLSJSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier D61 "SYSTEMATIC NAME" ACDLabs 12.01 "(2R,3R)-2-(carboxymethoxy)-4-{[5-(naphthalen-2-yl)pentyl]amino}-3-{[5-(naphthalen-2-yl)pentyl]oxy}-4-oxobutanoic acid" D61 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "(2R,3R)-2-(carboxymethyloxy)-3-(5-naphthalen-2-ylpentoxy)-4-(5-naphthalen-2-ylpentylamino)-4-oxo-butanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site D61 "Create component" 2011-01-12 PDBJ D61 "Modify aromatic_flag" 2011-06-04 RCSB D61 "Modify descriptor" 2011-06-04 RCSB #