data_D6P # _chem_comp.id D6P _chem_comp.name "(3,4,5,7-TETRAHYDROXY-HEPT-1-ENYL)-PHOSPHONIC ACID" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C7 H15 O7 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "2-DEOXY-D-GLUCITOL 6-(E)-VINYLHOMOPHOSPHONATE" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2003-12-03 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 242.164 _chem_comp.one_letter_code ? _chem_comp.three_letter_code D6P _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1RM0 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal D6P C1 C1 C 0 1 N N N -10.032 41.398 5.501 0.004 -0.493 5.127 C1 D6P 1 D6P C2 C2 C 0 1 N N N -11.445 41.142 6.083 0.653 -0.316 3.753 C2 D6P 2 D6P C3 C3 C 0 1 N N R -11.454 41.088 7.623 -0.432 -0.081 2.702 C3 D6P 3 D6P C4 C4 C 0 1 N N S -11.088 39.629 7.998 0.216 0.095 1.328 C4 D6P 4 D6P C5 C5 C 0 1 N N R -10.852 39.520 9.525 -0.869 0.331 0.277 C5 D6P 5 D6P C6 C6 C 0 1 N N N -9.941 38.438 9.653 -0.230 0.505 -1.076 C6 D6P 6 D6P O1 O1 O 0 1 N N N -9.201 40.274 5.711 1.019 -0.713 6.109 O1 D6P 7 D6P O3 O3 O 0 1 N N N -12.713 41.449 8.126 -1.171 1.096 3.035 O3 D6P 8 D6P O4 O4 O 0 1 N N N -12.158 38.813 7.602 1.099 1.218 1.360 O4 D6P 9 D6P O5 O5 O 0 1 N N N -10.315 40.738 9.975 -1.753 -0.792 0.245 O5 D6P 10 D6P C7 C7 C 0 1 N N N -10.069 37.646 10.698 -0.525 -0.318 -2.051 C7 D6P 11 D6P P P P 0 1 N N N -9.114 36.527 10.817 0.244 -0.108 -3.680 P D6P 12 D6P O1P O1P O 0 1 N N N -9.301 35.880 12.286 1.076 -1.434 -4.055 O1P D6P 13 D6P O2P O2P O 0 1 N N N -9.447 35.476 9.644 -0.899 0.139 -4.786 O2P D6P 14 D6P O3P O3P O 0 1 N N N -7.631 37.110 10.631 1.159 1.055 -3.647 O3P D6P 15 D6P H11 1H1 H 0 1 N N N -10.072 41.689 4.425 -0.669 -1.350 5.103 H11 D6P 16 D6P H12 2H1 H 0 1 N N N -9.578 42.331 5.908 -0.558 0.404 5.381 H12 D6P 17 D6P H21 1H2 H 0 1 N N N -12.175 41.894 5.705 1.327 0.540 3.777 H21 D6P 18 D6P H22 2H2 H 0 1 N N N -11.895 40.219 5.648 1.216 -1.214 3.499 H22 D6P 19 D6P H3 H3 H 0 1 N N N -10.726 41.807 8.065 -1.106 -0.937 2.678 H3 D6P 20 D6P H4 H4 H 0 1 N N N -10.150 39.308 7.486 0.779 -0.802 1.074 H4 D6P 21 D6P H5 H5 H 0 1 N N N -11.769 39.335 10.131 -1.433 1.229 0.531 H5 D6P 22 D6P H6 H6 H 0 1 N N N -9.131 38.212 8.938 0.471 1.309 -1.242 H6 D6P 23 D6P HO1 HO1 H 0 1 N N N -8.334 40.431 5.354 0.568 -0.819 6.958 HO1 D6P 24 D6P HO3 HO3 H 0 1 N N N -12.718 41.415 9.075 -0.539 1.828 3.046 HO3 D6P 25 D6P HO4 HO4 H 0 1 N N N -11.933 37.918 7.831 0.562 1.990 1.587 HO4 D6P 26 D6P HO5 HO5 H 0 1 N N N -10.170 40.671 10.911 -1.216 -1.563 0.017 HO5 D6P 27 D6P H7 H7 H 0 1 N N N -10.886 37.892 11.396 -1.227 -1.121 -1.885 H7 D6P 28 D6P H1P H1P H 0 1 N N N -8.686 35.159 12.362 1.468 -1.281 -4.926 H1P D6P 29 D6P H2P H2P H 0 1 N N N -8.832 34.755 9.720 -1.471 -0.639 -4.775 H2P D6P 30 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal D6P C1 C2 SING N N 1 D6P C1 O1 SING N N 2 D6P C1 H11 SING N N 3 D6P C1 H12 SING N N 4 D6P C2 C3 SING N N 5 D6P C2 H21 SING N N 6 D6P C2 H22 SING N N 7 D6P C3 C4 SING N N 8 D6P C3 O3 SING N N 9 D6P C3 H3 SING N N 10 D6P C4 C5 SING N N 11 D6P C4 O4 SING N N 12 D6P C4 H4 SING N N 13 D6P C5 C6 SING N N 14 D6P C5 O5 SING N N 15 D6P C5 H5 SING N N 16 D6P C6 C7 DOUB N E 17 D6P C6 H6 SING N N 18 D6P O1 HO1 SING N N 19 D6P O3 HO3 SING N N 20 D6P O4 HO4 SING N N 21 D6P O5 HO5 SING N N 22 D6P C7 P SING N N 23 D6P C7 H7 SING N N 24 D6P P O1P SING N N 25 D6P P O2P SING N N 26 D6P P O3P DOUB N N 27 D6P O1P H1P SING N N 28 D6P O2P H2P SING N N 29 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor D6P SMILES ACDLabs 10.04 "O=P(O)(O)/C=C/C(O)C(O)C(O)CCO" D6P SMILES_CANONICAL CACTVS 3.341 "OCC[C@@H](O)[C@H](O)[C@H](O)\C=C\[P](O)(O)=O" D6P SMILES CACTVS 3.341 "OCC[CH](O)[CH](O)[CH](O)C=C[P](O)(O)=O" D6P SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C(CO)[C@H]([C@@H]([C@@H](\C=C\P(=O)(O)O)O)O)O" D6P SMILES "OpenEye OEToolkits" 1.5.0 "C(CO)C(C(C(C=CP(=O)(O)O)O)O)O" D6P InChI InChI 1.03 "InChI=1S/C7H15O7P/c8-3-1-5(9)7(11)6(10)2-4-15(12,13)14/h2,4-11H,1,3H2,(H2,12,13,14)/b4-2+/t5-,6-,7+/m1/s1" D6P InChIKey InChI 1.03 CZQSGBWQBMZTMQ-AEVYZNAZSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier D6P "SYSTEMATIC NAME" ACDLabs 10.04 "(6E)-2,6,7-trideoxy-7-phosphono-D-arabino-hept-6-enitol" D6P "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(E,3R,4S,5R)-3,4,5,7-tetrahydroxyhept-1-enyl]phosphonic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site D6P "Create component" 2003-12-03 RCSB D6P "Modify descriptor" 2011-06-04 RCSB D6P "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id D6P _pdbx_chem_comp_synonyms.name "2-DEOXY-D-GLUCITOL 6-(E)-VINYLHOMOPHOSPHONATE" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##