data_D7I # _chem_comp.id D7I _chem_comp.name "5,5'-(ethane-1,2-diylbis(oxy))bis(benzene-5,4,2,1,-tetrayl)hexakisphosphate" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C14 H20 O26 P6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2019-09-04 _chem_comp.pdbx_modified_date 2021-01-08 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 790.136 _chem_comp.one_letter_code ? _chem_comp.three_letter_code D7I _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6SQU _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal D7I C1 C1 C 0 1 Y N N -9.167 28.484 -20.201 -2.718 0.037 0.354 C1 D7I 1 D7I "C1'" C2 C 0 1 Y N N -8.594 24.888 -16.892 2.719 -0.022 -0.358 "C1'" D7I 2 D7I C2 C3 C 0 1 Y N N -8.817 28.644 -21.539 -3.394 1.117 0.909 C2 D7I 3 D7I "C2'" C4 C 0 1 Y N N -7.888 23.794 -17.416 3.370 1.051 -0.956 "C2'" D7I 4 D7I C3 C5 C 0 1 Y N N -9.727 29.234 -22.424 -4.772 1.205 0.796 C3 D7I 5 D7I "C3'" C6 C 0 1 Y N N -6.821 23.239 -16.687 4.746 1.174 -0.850 "C3'" D7I 6 D7I C4 C7 C 0 1 Y N N -10.977 29.649 -21.969 -5.477 0.215 0.130 C4 D7I 7 D7I "C4'" C8 C 0 1 Y N N -6.466 23.765 -15.435 5.474 0.227 -0.147 "C4'" D7I 8 D7I C5 C9 C 0 1 Y N N -11.323 29.472 -20.633 -4.800 -0.867 -0.425 C5 D7I 9 D7I "C5'" C10 C 0 1 Y N N -7.172 24.856 -14.909 4.823 -0.847 0.451 "C5'" D7I 10 D7I C6 C11 C 0 1 Y N N -10.421 28.894 -19.754 -3.422 -0.954 -0.312 C6 D7I 11 D7I "C6'" C12 C 0 1 Y N N -8.239 25.414 -15.637 3.447 -0.970 0.345 "C6'" D7I 12 D7I C7 C13 C 0 1 N N N -8.190 26.445 -19.409 -0.745 -1.235 -0.036 C7 D7I 13 D7I "C7'" C14 C 0 1 N N N -9.538 25.749 -19.031 0.752 -1.200 0.277 "C7'" D7I 14 D7I O1 O1 O 0 1 N N N -8.285 27.879 -19.241 -1.364 -0.046 0.461 O1 D7I 15 D7I "O1'" O2 O 0 1 N N N -9.703 25.493 -17.616 1.367 -0.139 -0.458 "O1'" D7I 16 D7I O2 O3 O 0 1 N N N -7.546 28.239 -22.014 -2.702 2.089 1.564 O2 D7I 17 D7I "O2'" O4 O 0 1 N N N -8.214 23.237 -18.679 2.655 1.981 -1.646 "O2'" D7I 18 D7I O21 O5 O 0 1 N N N -6.067 26.346 -22.710 -2.163 0.641 3.691 O21 D7I 19 D7I O22 O6 O 0 1 N N N -8.489 25.994 -22.705 -2.054 3.265 3.824 O22 D7I 20 D7I O23 O7 O 0 1 N N N -7.452 27.429 -24.420 -4.252 2.053 3.556 O23 D7I 21 D7I O4 O8 O 0 1 N N N -11.897 30.229 -22.857 -6.830 0.300 0.019 O4 D7I 22 D7I "O4'" O9 O 0 1 N N N -5.374 23.183 -14.707 6.825 0.347 -0.043 "O4'" D7I 23 D7I O41 O10 O 0 1 N N N -14.178 30.171 -23.969 -6.870 0.931 -2.533 O41 D7I 24 D7I O42 O11 O 0 1 N N N -13.709 28.564 -22.151 -8.938 1.490 -1.008 O42 D7I 25 D7I O43 O12 O 0 1 N N N -12.623 28.288 -24.358 -6.741 2.705 -0.742 O43 D7I 26 D7I O5 O13 O 0 1 N N N -12.570 29.881 -20.150 -5.492 -1.838 -1.080 O5 D7I 27 D7I "O5'" O14 O 0 1 N N N -6.832 25.389 -13.665 5.537 -1.777 1.141 "O5'" D7I 28 D7I O51 O15 O 0 1 N N N -13.680 32.099 -19.587 -6.255 -2.918 1.071 O51 D7I 29 D7I O52 O16 O 0 1 N N N -12.838 30.664 -17.743 -6.586 -4.229 -1.060 O52 D7I 30 D7I O53 O17 O 0 1 N N N -11.243 31.848 -19.234 -4.194 -3.870 -0.031 O53 D7I 31 D7I P2 P1 P 0 1 N N N -7.396 26.988 -22.972 -2.824 2.013 3.167 P2 D7I 32 D7I "P2'" P2 P 0 1 N N N -9.537 22.355 -18.843 2.775 1.844 -3.246 "P2'" D7I 33 D7I P4 P3 P 0 1 N N N -13.118 29.312 -23.343 -7.332 1.385 -1.059 P4 D7I 34 D7I "P4'" P4 P 0 1 N N N -3.924 23.176 -15.422 7.304 1.484 0.991 "P4'" D7I 35 D7I P5 P5 P 0 1 N N N -12.585 31.140 -19.170 -5.645 -3.207 -0.246 P5 D7I 36 D7I "P5'" P6 P 0 1 N N N -6.191 26.851 -13.600 5.720 -3.174 0.361 "P5'" D7I 37 D7I "O21'" O18 O 0 0 N N N -9.176 20.877 -18.949 1.976 3.052 -3.949 "O21'" D7I 38 D7I "O22'" O19 O 0 0 N N N -10.240 22.768 -20.106 4.201 1.899 -3.640 "O22'" D7I 39 D7I "O23'" O20 O 0 0 N N N -10.446 22.590 -17.660 2.143 0.439 -3.713 "O23'" D7I 40 D7I "O41'" O21 O 0 0 N N N -2.877 22.706 -14.441 6.855 1.077 2.482 "O41'" D7I 41 D7I "O42'" O22 O 0 0 N N N -3.584 24.582 -15.889 8.907 1.623 0.932 "O42'" D7I 42 D7I "O43'" O23 O 0 0 N N N -3.958 22.256 -16.610 6.683 2.777 0.624 "O43'" D7I 43 D7I "O51'" O24 O 0 0 N N N -5.151 26.899 -12.517 4.283 -3.877 0.176 "O51'" D7I 44 D7I "O52'" O25 O 0 0 N N N -5.558 27.187 -14.933 6.320 -2.922 -0.968 "O52'" D7I 45 D7I "O53'" O26 O 0 0 N N N -7.283 27.853 -13.293 6.685 -4.142 1.211 "O53'" D7I 46 D7I H3 H1 H 0 1 N N N -9.460 29.368 -23.462 -5.298 2.044 1.227 H3 D7I 47 D7I "H3'" H2 H 0 1 N N N -6.271 22.403 -17.093 5.252 2.007 -1.314 "H3'" D7I 48 D7I H6 H3 H 0 1 N N N -10.692 28.761 -18.717 -2.897 -1.791 -0.747 H6 D7I 49 D7I "H6'" H4 H 0 1 N N N -8.788 26.250 -15.230 2.941 -1.803 0.809 "H6'" D7I 50 D7I H71 H5 H 0 1 N N N -7.951 26.220 -20.459 -0.890 -1.296 -1.114 H71 D7I 51 D7I H72 H6 H 0 1 N N N -7.391 26.058 -18.760 -1.196 -2.105 0.442 H72 D7I 52 D7I "H7'2" H7 H 0 0 N N N -10.364 26.396 -19.362 0.896 -1.034 1.344 "H7'2" D7I 53 D7I "H7'1" H8 H 0 0 N N N -9.590 24.787 -19.563 1.205 -2.149 -0.008 "H7'1" D7I 54 D7I H1 H9 H 0 1 N N N -5.548 26.354 -23.506 -1.210 0.581 3.539 H1 D7I 55 D7I H2 H10 H 0 1 N N N -8.987 25.849 -23.501 -2.086 3.283 4.791 H2 D7I 56 D7I H4 H11 H 0 1 N N N -14.319 29.897 -24.868 -7.221 0.073 -2.807 H4 D7I 57 D7I H5 H12 H 0 1 N N N -13.641 27.628 -22.299 -9.311 2.127 -1.633 H5 D7I 58 D7I H7 H13 H 0 1 N N N -13.631 31.068 -17.410 -6.723 -5.077 -0.616 H7 D7I 59 D7I H8 H14 H 0 1 N N N -11.371 32.744 -19.522 -3.735 -4.087 -0.854 H8 D7I 60 D7I H9 H15 H 0 1 N N N -9.471 20.538 -19.786 2.006 3.033 -4.916 H9 D7I 61 D7I H10 H16 H 0 1 N N N -11.272 22.950 -17.961 1.192 0.364 -3.556 H10 D7I 62 D7I H11 H17 H 0 1 N N N -2.455 21.924 -14.778 7.225 0.239 2.789 H11 D7I 63 D7I H12 H18 H 0 1 N N N -3.465 24.583 -16.832 9.266 2.292 1.530 H12 D7I 64 D7I H13 H19 H 0 1 N N N -4.311 27.131 -12.894 3.830 -4.071 1.008 H13 D7I 65 D7I H14 H20 H 0 1 N N N -7.343 28.484 -14.001 6.840 -5.003 0.800 H14 D7I 66 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal D7I O23 P2 DOUB N N 1 D7I O43 P4 DOUB N N 2 D7I O41 P4 SING N N 3 D7I P4 O4 SING N N 4 D7I P4 O42 SING N N 5 D7I P2 O21 SING N N 6 D7I P2 O22 SING N N 7 D7I P2 O2 SING N N 8 D7I O4 C4 SING N N 9 D7I C3 C4 DOUB Y N 10 D7I C3 C2 SING Y N 11 D7I O2 C2 SING N N 12 D7I C4 C5 SING Y N 13 D7I C2 C1 DOUB Y N 14 D7I C5 O5 SING N N 15 D7I C5 C6 DOUB Y N 16 D7I C1 C6 SING Y N 17 D7I C1 O1 SING N N 18 D7I O5 P5 SING N N 19 D7I "O22'" "P2'" DOUB N N 20 D7I O51 P5 DOUB N N 21 D7I C7 O1 SING N N 22 D7I C7 "C7'" SING N N 23 D7I O53 P5 SING N N 24 D7I P5 O52 SING N N 25 D7I "C7'" "O1'" SING N N 26 D7I "O21'" "P2'" SING N N 27 D7I "P2'" "O2'" SING N N 28 D7I "P2'" "O23'" SING N N 29 D7I "O2'" "C2'" SING N N 30 D7I "O1'" "C1'" SING N N 31 D7I "C2'" "C1'" DOUB Y N 32 D7I "C2'" "C3'" SING Y N 33 D7I "C1'" "C6'" SING Y N 34 D7I "C3'" "C4'" DOUB Y N 35 D7I "O43'" "P4'" DOUB N N 36 D7I "O42'" "P4'" SING N N 37 D7I "C6'" "C5'" DOUB Y N 38 D7I "C4'" "C5'" SING Y N 39 D7I "C4'" "O4'" SING N N 40 D7I "P4'" "O4'" SING N N 41 D7I "P4'" "O41'" SING N N 42 D7I "O52'" "P5'" DOUB N N 43 D7I "C5'" "O5'" SING N N 44 D7I "O5'" "P5'" SING N N 45 D7I "P5'" "O53'" SING N N 46 D7I "P5'" "O51'" SING N N 47 D7I C3 H3 SING N N 48 D7I "C3'" "H3'" SING N N 49 D7I C6 H6 SING N N 50 D7I "C6'" "H6'" SING N N 51 D7I C7 H71 SING N N 52 D7I C7 H72 SING N N 53 D7I "C7'" "H7'2" SING N N 54 D7I "C7'" "H7'1" SING N N 55 D7I O21 H1 SING N N 56 D7I O22 H2 SING N N 57 D7I O41 H4 SING N N 58 D7I O42 H5 SING N N 59 D7I O52 H7 SING N N 60 D7I O53 H8 SING N N 61 D7I "O21'" H9 SING N N 62 D7I "O23'" H10 SING N N 63 D7I "O41'" H11 SING N N 64 D7I "O42'" H12 SING N N 65 D7I "O51'" H13 SING N N 66 D7I "O53'" H14 SING N N 67 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor D7I InChI InChI 1.03 "InChI=1S/C14H20O26P6/c15-41(16,17)35-9-5-13(39-45(27,28)29)11(37-43(21,22)23)3-7(9)33-1-2-34-8-4-12(38-44(24,25)26)14(40-46(30,31)32)6-10(8)36-42(18,19)20/h3-6H,1-2H2,(H2,15,16,17)(H2,18,19,20)(H2,21,22,23)(H2,24,25,26)(H2,27,28,29)(H2,30,31,32)" D7I InChIKey InChI 1.03 SPZGMBGXCYAMCB-UHFFFAOYSA-N D7I SMILES_CANONICAL CACTVS 3.385 "O[P](O)(=O)Oc1cc(O[P](O)(O)=O)c(O[P](O)(O)=O)cc1OCCOc2cc(O[P](O)(O)=O)c(O[P](O)(O)=O)cc2O[P](O)(O)=O" D7I SMILES CACTVS 3.385 "O[P](O)(=O)Oc1cc(O[P](O)(O)=O)c(O[P](O)(O)=O)cc1OCCOc2cc(O[P](O)(O)=O)c(O[P](O)(O)=O)cc2O[P](O)(O)=O" D7I SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1c(c(cc(c1OP(=O)(O)O)OP(=O)(O)O)OP(=O)(O)O)OCCOc2cc(c(cc2OP(=O)(O)O)OP(=O)(O)O)OP(=O)(O)O" D7I SMILES "OpenEye OEToolkits" 2.0.7 "c1c(c(cc(c1OP(=O)(O)O)OP(=O)(O)O)OP(=O)(O)O)OCCOc2cc(c(cc2OP(=O)(O)O)OP(=O)(O)O)OP(=O)(O)O" # _pdbx_chem_comp_identifier.comp_id D7I _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[2,4-diphosphonooxy-5-[2-(2,4,5-triphosphonooxyphenoxy)ethoxy]phenyl] dihydrogen phosphate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site D7I "Create component" 2019-09-04 EBI D7I "Initial release" 2021-01-13 RCSB ##