data_D7O # _chem_comp.id D7O _chem_comp.name "~{O}3-~{tert}-butyl ~{O}1-methyl (1~{S},3~{S},5~{R})-6-methylidene-4-oxidanylidene-bicyclo[3.2.1]octane-1,3-dicarboxylate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H22 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-07-17 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 294.343 _chem_comp.one_letter_code ? _chem_comp.three_letter_code D7O _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8PT3 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal D7O C1 C1 C 0 1 N N N N N N -27.131 -35.805 21.685 0.327 -1.427 -0.569 C1 D7O 1 D7O C2 C2 C 0 1 N N S N N N -26.169 -34.618 21.622 0.388 -0.199 0.314 C2 D7O 2 D7O C3 C3 C 0 1 N N N N N N -25.200 -34.545 22.825 -0.754 0.751 -0.059 C3 D7O 3 D7O C8 C4 C 0 1 N N N N N N -25.389 -37.428 21.490 -1.557 -2.270 0.720 C8 D7O 4 D7O C14 C5 C 0 1 N N N N N N -23.612 -35.795 24.319 -3.264 0.893 -0.248 C14 D7O 5 D7O C15 C6 C 0 1 N N N N N N -21.403 -35.053 24.768 -4.667 2.660 0.522 C15 D7O 6 D7O C16 C7 C 0 1 N N N N N N -26.925 -33.318 21.406 1.709 0.499 0.114 C16 D7O 7 D7O C17 C8 C 0 1 N N N N N N -26.484 -30.891 21.284 4.089 0.588 0.162 C17 D7O 8 D7O C19 C9 C 0 1 N N N N N N -27.828 -30.483 21.837 4.105 1.832 1.052 C19 D7O 9 D7O C20 C10 C 0 1 N N N N N N -25.372 -30.040 21.843 4.183 1.009 -1.306 C20 D7O 10 D7O C18 C11 C 0 1 N N N N N N -26.485 -30.899 19.773 5.282 -0.305 0.513 C18 D7O 11 D7O C7 C12 C 0 1 N N N N N N -24.150 -36.775 22.070 -2.173 -0.942 1.111 C7 D7O 12 D7O C5 C13 C 0 1 N N N N N N -25.918 -36.745 23.722 -1.970 -1.024 -1.309 C5 D7O 13 D7O C6 C14 C 0 1 N N R N N N -26.573 -37.045 22.365 -1.033 -2.106 -0.703 C6 D7O 14 D7O C9 C15 C 0 1 N N N N N N -25.433 -38.180 20.406 -1.487 -3.349 1.460 C9 D7O 15 D7O C4 C16 C 0 1 N N S N N N -24.690 -35.935 23.254 -2.076 -0.025 -0.127 C4 D7O 16 D7O O4 O1 O 0 1 N N N N N N -28.250 -35.784 21.219 1.304 -1.846 -1.143 O4 D7O 17 D7O O3 O2 O 0 1 N N N N N N -26.171 -32.269 21.732 2.855 -0.147 0.377 O3 D7O 18 D7O O2 O3 O 0 1 N N N N N N -28.038 -33.253 20.945 1.735 1.640 -0.283 O2 D7O 19 D7O O O4 O 0 1 N N N N N N -22.463 -35.332 23.820 -3.504 1.809 0.704 O D7O 20 D7O O1 O5 O 0 1 N N N N N N -23.780 -36.053 25.483 -4.001 0.806 -1.202 O1 D7O 21 D7O H1 H1 H 0 1 N N N N N N -25.543 -34.770 20.730 0.287 -0.496 1.358 H1 D7O 22 D7O H2 H2 H 0 1 N N N N N N -24.337 -33.923 22.546 -0.833 1.535 0.694 H2 D7O 23 D7O H3 H3 H 0 1 N N N N N N -25.725 -34.084 23.674 -0.547 1.201 -1.030 H3 D7O 24 D7O H4 H4 H 0 1 N N N N N N -20.518 -34.680 24.231 -4.744 3.352 1.360 H4 D7O 25 D7O H5 H5 H 0 1 N N N N N N -21.744 -34.292 25.485 -4.564 3.222 -0.406 H5 D7O 26 D7O H6 H6 H 0 1 N N N N N N -21.142 -35.975 25.308 -5.564 2.043 0.476 H6 D7O 27 D7O H7 H7 H 0 1 N N N N N N -27.790 -30.488 22.936 4.038 1.532 2.098 H7 D7O 28 D7O H8 H8 H 0 1 N N N N N N -28.078 -29.472 21.484 5.031 2.383 0.890 H8 D7O 29 D7O H9 H9 H 0 1 N N N N N N -28.596 -31.191 21.493 3.255 2.468 0.802 H9 D7O 30 D7O H10 H10 H 0 1 N N N N N N -25.409 -30.063 22.942 3.333 1.645 -1.556 H10 D7O 31 D7O H11 H11 H 0 1 N N N N N N -24.403 -30.432 21.501 5.109 1.560 -1.468 H11 D7O 32 D7O H12 H12 H 0 1 N N N N N N -25.492 -29.004 21.494 4.172 0.123 -1.940 H12 D7O 33 D7O H13 H13 H 0 1 N N N N N N -26.714 -29.890 19.401 5.271 -1.191 -0.121 H13 D7O 34 D7O H14 H14 H 0 1 N N N N N N -25.495 -31.208 19.407 6.208 0.246 0.351 H14 D7O 35 D7O H15 H15 H 0 1 N N N N N N -27.247 -31.605 19.411 5.215 -0.605 1.558 H15 D7O 36 D7O H16 H16 H 0 1 N N N N N N -23.436 -37.534 22.422 -3.217 -1.083 1.389 H16 D7O 37 D7O H17 H17 H 0 1 N N N N N N -23.662 -36.131 21.324 -1.621 -0.505 1.943 H17 D7O 38 D7O H18 H18 H 0 1 N N N N N N -26.577 -36.149 24.371 -1.515 -0.554 -2.181 H18 D7O 39 D7O H19 H19 H 0 1 N N N N N N -25.624 -37.666 24.246 -2.945 -1.444 -1.558 H19 D7O 40 D7O H20 H20 H 0 1 N N N N N N -27.317 -37.852 22.436 -0.999 -3.040 -1.266 H20 D7O 41 D7O H21 H21 H 0 1 N N N N N N -26.375 -38.585 20.068 -1.896 -3.345 2.460 H21 D7O 42 D7O H22 H22 H 0 1 N N N N N N -24.527 -38.390 19.857 -1.021 -4.242 1.071 H22 D7O 43 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal D7O C18 C17 SING N N 1 D7O C9 C8 DOUB N N 2 D7O O2 C16 DOUB N N 3 D7O O4 C1 DOUB N N 4 D7O C17 O3 SING N N 5 D7O C17 C19 SING N N 6 D7O C17 C20 SING N N 7 D7O C16 C2 SING N N 8 D7O C16 O3 SING N N 9 D7O C8 C7 SING N N 10 D7O C8 C6 SING N N 11 D7O C2 C1 SING N N 12 D7O C2 C3 SING N N 13 D7O C1 C6 SING N N 14 D7O C7 C4 SING N N 15 D7O C6 C5 SING N N 16 D7O C3 C4 SING N N 17 D7O C4 C5 SING N N 18 D7O C4 C14 SING N N 19 D7O O C14 SING N N 20 D7O O C15 SING N N 21 D7O C14 O1 DOUB N N 22 D7O C2 H1 SING N N 23 D7O C3 H2 SING N N 24 D7O C3 H3 SING N N 25 D7O C15 H4 SING N N 26 D7O C15 H5 SING N N 27 D7O C15 H6 SING N N 28 D7O C19 H7 SING N N 29 D7O C19 H8 SING N N 30 D7O C19 H9 SING N N 31 D7O C20 H10 SING N N 32 D7O C20 H11 SING N N 33 D7O C20 H12 SING N N 34 D7O C18 H13 SING N N 35 D7O C18 H14 SING N N 36 D7O C18 H15 SING N N 37 D7O C7 H16 SING N N 38 D7O C7 H17 SING N N 39 D7O C5 H18 SING N N 40 D7O C5 H19 SING N N 41 D7O C6 H20 SING N N 42 D7O C9 H21 SING N N 43 D7O C9 H22 SING N N 44 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor D7O InChI InChI 1.06 "InChI=1S/C16H22O5/c1-9-6-16(14(19)20-5)7-10(9)12(17)11(8-16)13(18)21-15(2,3)4/h10-11H,1,6-8H2,2-5H3/t10-,11+,16+/m1/s1" D7O InChIKey InChI 1.06 ILHZGEBKECHEND-GDLVEWKHSA-N D7O SMILES_CANONICAL CACTVS 3.385 "COC(=O)[C@]12C[C@H](C(=C)C1)C(=O)[C@H](C2)C(=O)OC(C)(C)C" D7O SMILES CACTVS 3.385 "COC(=O)[C]12C[CH](C(=C)C1)C(=O)[CH](C2)C(=O)OC(C)(C)C" D7O SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)(C)OC(=O)[C@H]1C[C@]2(C[C@@H](C1=O)C(=C)C2)C(=O)OC" D7O SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)(C)OC(=O)C1CC2(CC(C1=O)C(=C)C2)C(=O)OC" # _pdbx_chem_comp_identifier.comp_id D7O _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{O}3-~{tert}-butyl ~{O}1-methyl (1~{S},3~{S},5~{R})-6-methylidene-4-oxidanylidene-bicyclo[3.2.1]octane-1,3-dicarboxylate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site D7O "Create component" 2023-07-17 PDBE D7O "Initial release" 2024-07-24 RCSB D7O "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id D7O _pdbx_chem_comp_pcm.modified_residue_id HIS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C3 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom NE2 _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? _pdbx_chem_comp_pcm.first_instance_model_db_code 8PT3 #